HEADER RIBOSOME 22-FEB-19 6QTA TITLE CRYSTAL STRUCTURE OF REA1-MIDAS/RSA4-UBL COMPLEX FROM CHAETOMIUM TITLE 2 THERMOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIDASIN,MIDASIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBOSOME ASSEMBLY PROTEIN 4; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: NOTCHLESS PROTEIN HOMOLOG 1,RIBOSOME BIOGENESIS FACTOR RSA4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0069750; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 10 1495; SOURCE 11 ORGANISM_TAXID: 759272; SOURCE 12 GENE: CTHT_0055700; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIBOSOME BIOGENESIS, INTEGRIN, MIDAS, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.AHMED,M.THOMS,E.HURT,I.SINNING REVDAT 2 24-JAN-24 6QTA 1 LINK REVDAT 1 07-AUG-19 6QTA 0 JRNL AUTH Y.L.AHMED,M.THOMS,V.MITTERER,I.SINNING,E.HURT JRNL TITL CRYSTAL STRUCTURES OF REA1-MIDAS BOUND TO ITS RIBOSOME JRNL TITL 2 ASSEMBLY FACTOR LIGANDS RESEMBLING INTEGRIN-LIGAND-TYPE JRNL TITL 3 COMPLEXES. JRNL REF NAT COMMUN V. 10 3050 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31296859 JRNL DOI 10.1038/S41467-019-10922-6 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 4020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7276 - 5.8030 1.00 2512 150 0.1954 0.1952 REMARK 3 2 5.8030 - 4.6074 1.00 2509 151 0.1620 0.2282 REMARK 3 3 4.6074 - 4.0254 1.00 2579 110 0.1340 0.1412 REMARK 3 4 4.0254 - 3.6575 1.00 2559 118 0.1373 0.1783 REMARK 3 5 3.6575 - 3.3954 1.00 2523 142 0.1480 0.1915 REMARK 3 6 3.3954 - 3.1953 1.00 2487 179 0.1531 0.1987 REMARK 3 7 3.1953 - 3.0353 1.00 2525 146 0.1584 0.1568 REMARK 3 8 3.0353 - 2.9032 1.00 2541 136 0.1574 0.2035 REMARK 3 9 2.9032 - 2.7915 1.00 2529 147 0.1691 0.1974 REMARK 3 10 2.7915 - 2.6952 1.00 2512 150 0.1687 0.2365 REMARK 3 11 2.6952 - 2.6109 1.00 2540 144 0.1680 0.2113 REMARK 3 12 2.6109 - 2.5363 1.00 2548 128 0.1800 0.2347 REMARK 3 13 2.5363 - 2.4695 1.00 2546 104 0.1731 0.2481 REMARK 3 14 2.4695 - 2.4093 1.00 2493 139 0.1724 0.2115 REMARK 3 15 2.4093 - 2.3545 1.00 2583 137 0.1729 0.2303 REMARK 3 16 2.3545 - 2.3044 1.00 2497 149 0.1821 0.2188 REMARK 3 17 2.3044 - 2.2583 1.00 2566 115 0.1796 0.2235 REMARK 3 18 2.2583 - 2.2157 1.00 2545 127 0.1902 0.2089 REMARK 3 19 2.2157 - 2.1761 1.00 2531 147 0.1975 0.2270 REMARK 3 20 2.1761 - 2.1392 1.00 2520 156 0.2180 0.2724 REMARK 3 21 2.1392 - 2.1047 1.00 2553 130 0.2268 0.2464 REMARK 3 22 2.1047 - 2.0723 1.00 2508 129 0.2229 0.2390 REMARK 3 23 2.0723 - 2.0419 1.00 2546 148 0.2401 0.3032 REMARK 3 24 2.0419 - 2.0131 1.00 2493 157 0.2598 0.2813 REMARK 3 25 2.0131 - 1.9859 1.00 2576 130 0.2665 0.3512 REMARK 3 26 1.9859 - 1.9601 1.00 2471 157 0.2837 0.2808 REMARK 3 27 1.9601 - 1.9356 1.00 2543 148 0.3076 0.3428 REMARK 3 28 1.9356 - 1.9123 1.00 2513 138 0.3249 0.3399 REMARK 3 29 1.9123 - 1.8900 1.00 2576 108 0.3301 0.3749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2965 REMARK 3 ANGLE : 1.412 4011 REMARK 3 CHIRALITY : 0.090 455 REMARK 3 PLANARITY : 0.008 517 REMARK 3 DIHEDRAL : 12.666 2259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.9677 36.4946 5.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.1235 REMARK 3 T33: 0.1309 T12: 0.0032 REMARK 3 T13: -0.0015 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.3445 L22: 1.2738 REMARK 3 L33: 1.6024 L12: -0.5687 REMARK 3 L13: -0.2272 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: -0.1587 S13: 0.0428 REMARK 3 S21: 0.0072 S22: 0.0681 S23: 0.1091 REMARK 3 S31: -0.0570 S32: -0.0046 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87290 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 36.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, SHELXDE REMARK 200 STARTING MODEL: 6QT8 AND 4WJS (UBL DOMAIN ONLY) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M (NH4)2SO4, 5% PEG 400 AND 0.1 M REMARK 280 MES AT PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.31150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.83750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.83750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.96725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.83750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.83750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.65575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.83750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.83750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.96725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.83750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.83750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.65575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.31150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5332 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4689 REMARK 465 HIS A 4690 REMARK 465 ILE A 4691 REMARK 465 SER A 4692 REMARK 465 ASP A 4693 REMARK 465 GLU A 4694 REMARK 465 GLN A 4695 REMARK 465 PRO A 4775 REMARK 465 SER A 4776 REMARK 465 SER A 4887 REMARK 465 ARG A 4888 REMARK 465 GLY A 4889 REMARK 465 GLY A 4890 REMARK 465 GLU A 4891 REMARK 465 GLY A 4998 REMARK 465 SER A 4999 REMARK 465 HIS A 5000 REMARK 465 HIS A 5001 REMARK 465 HIS A 5002 REMARK 465 HIS A 5003 REMARK 465 HIS A 5004 REMARK 465 HIS A 5005 REMARK 465 MET B 21 REMARK 465 LYS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 5260 O HOH A 5287 1.92 REMARK 500 CZ3 TRP A 4894 O HOH A 5239 1.96 REMARK 500 OD2 ASP A 4861 OG1 THR B 113 1.98 REMARK 500 O HOH A 5203 O HOH B 242 2.07 REMARK 500 O HOH A 5325 O HOH A 5338 2.13 REMARK 500 O HOH B 236 O HOH B 254 2.15 REMARK 500 NZ LYS B 63 O HOH B 201 2.16 REMARK 500 OE1 GLN A 4718 O HOH A 5201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 5336 O HOH A 5362 7555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A4797 CZ ARG A4797 NH1 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A4797 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A4797 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 MET A4865 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A4924 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A4924 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A4733 37.94 -82.16 REMARK 500 THR A4799 90.01 47.64 REMARK 500 PHE A4843 42.97 -73.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 4733 GLY A 4734 148.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A5101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A4789 OG REMARK 620 2 SER A4791 OG 93.5 REMARK 620 3 THR A4863 OG1 85.9 177.4 REMARK 620 4 HOH A5221 O 89.8 85.5 97.0 REMARK 620 5 HOH A5243 O 177.1 89.3 91.3 91.5 REMARK 620 6 GLU B 117 OE1 87.5 85.0 92.5 169.9 91.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 5101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 5102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 5103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 5104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5111 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QT8 RELATED DB: PDB REMARK 900 RELATED ID: 6QTB RELATED DB: PDB DBREF 6QTA A 4690 4733 UNP G0SHE6 G0SHE6_CHATD 4690 4733 DBREF 6QTA A 4737 4997 UNP G0SHE6 G0SHE6_CHATD 4774 4997 DBREF 6QTA B 30 128 UNP G0SC29 NLE1_CHATD 30 128 SEQADV 6QTA MET A 4689 UNP G0SHE6 INITIATING METHIONINE SEQADV 6QTA GLY A 4734 UNP G0SHE6 LINKER SEQADV 6QTA SER A 4735 UNP G0SHE6 LINKER SEQADV 6QTA GLY A 4736 UNP G0SHE6 LINKER SEQADV 6QTA GLY A 4998 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA SER A 4999 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5000 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5001 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5002 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5003 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5004 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA HIS A 5005 UNP G0SHE6 EXPRESSION TAG SEQADV 6QTA MET B 21 UNP G0SC29 INITIATING METHIONINE SEQADV 6QTA LYS B 22 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 23 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 24 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 25 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 26 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 27 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA HIS B 28 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA PRO B 29 UNP G0SC29 EXPRESSION TAG SEQADV 6QTA MET B 30 UNP G0SC29 VAL 30 CONFLICT SEQRES 1 A 280 MET HIS ILE SER ASP GLU GLN LEU LYS ARG PRO LEU ARG SEQRES 2 A 280 ASP TYR GLY GLU ALA LEU GLU MET TRP SER THR PHE GLN SEQRES 3 A 280 THR LYS THR GLN ALA LEU SER GLN SER LEU SER SER GLN SEQRES 4 A 280 LEU ARG LEU ILE LEU THR GLY SER GLY ILE PRO SER LYS SEQRES 5 A 280 ARG ALA TYR GLN ILE LEU LEU CYS VAL ASP ASP SER SER SEQRES 6 A 280 SER MET SER ASP ASP ASN ARG SER THR ALA GLY ASN LEU SEQRES 7 A 280 ALA LEU GLU SER LEU VAL MET VAL ALA ARG ALA LEU THR SEQRES 8 A 280 VAL LEU GLU ALA GLY GLN ILE GLY VAL MET GLY PHE GLY SEQRES 9 A 280 THR ASP VAL PHE VAL ALA HIS ALA LEU THR ASP PRO PRO SEQRES 10 A 280 PHE THR SER GLN ASP ALA GLY ALA ARG VAL LEU GLN GLN SEQRES 11 A 280 PHE THR PHE ARG GLN ASP SER THR ASP MET VAL LEU LEU SEQRES 12 A 280 LEU ARG ARG THR ILE ASP HIS PHE ARG GLU ALA ARG LEU SEQRES 13 A 280 ILE GLN ALA SER SER SER ARG GLY GLY GLU ASP LEU TRP SEQRES 14 A 280 GLN LEU ALA LEU ILE LEU SER ASP GLY LEU VAL GLN SER SEQRES 15 A 280 ARG ASP HIS ALA ARG LEU ARG PRO LEU LEU ARG GLU ALA SEQRES 16 A 280 MET GLU GLN ARG VAL MET VAL VAL PHE ILE VAL MET ASP SEQRES 17 A 280 ASP ALA ARG SER ARG LYS GLY HIS SER VAL LEU GLU LEU SEQRES 18 A 280 LYS GLU ALA ARG PHE GLY PRO ASP GLY VAL PRO VAL ILE SEQRES 19 A 280 HIS ARG TYR LEU ASP SER PHE PRO PHE PRO TYR TYR LEU SEQRES 20 A 280 ILE VAL HIS HIS LEU GLU ASP LEU PRO GLY ALA LEU ALA SEQRES 21 A 280 ALA LEU LEU ARG THR TRP PHE ALA GLU VAL ASN SER GLY SEQRES 22 A 280 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 108 MET LYS HIS HIS HIS HIS HIS HIS PRO MET ALA THR ASP SEQRES 2 B 108 LEU GLY SER PHE LYS ALA ASN PHE ILE ASP SER ASP GLY SEQRES 3 B 108 ASN GLN MET THR ASP VAL VAL GLU ILE ASN PHE ALA ASP SEQRES 4 B 108 ALA THR GLU LYS ASN ILE SER ASN LEU LEU ASN THR LEU SEQRES 5 B 108 LEU GLY ARG ASP ARG GLU GLU PHE THR PRO TYR ARG PHE SEQRES 6 B 108 ARG ILE HIS ILE PRO GLY LYS ASP LEU ILE ILE ASP GLN SEQRES 7 B 108 TYR PRO ASN ASP LEU LEU SER LEU LEU GLN LYS HIS GLY SEQRES 8 B 108 VAL THR ASN PRO PHE GLU THR THR ILE THR LEU SER ALA SEQRES 9 B 108 GLU PRO GLN ALA HET MG A5101 1 HET SO4 A5102 5 HET SO4 A5103 5 HET SO4 A5104 5 HET GOL A5105 6 HET GOL A5106 6 HET GOL A5107 6 HET GOL A5108 6 HET GOL A5109 6 HET GOL A5110 6 HET GOL A5111 6 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG MG 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 14 HOH *219(H2 O) HELIX 1 AA1 ASP A 4702 THR A 4733 1 32 HELIX 2 AA2 SER A 4789 ASP A 4794 5 6 HELIX 3 AA3 THR A 4799 GLU A 4819 1 21 HELIX 4 AA4 SER A 4845 GLN A 4854 1 10 HELIX 5 AA5 ASP A 4864 SER A 4886 1 23 HELIX 6 AA6 SER A 4907 GLN A 4923 1 17 HELIX 7 AA7 LEU A 4963 PHE A 4966 5 4 HELIX 8 AA8 HIS A 4976 GLU A 4978 5 3 HELIX 9 AA9 ASP A 4979 ASN A 4996 1 18 HELIX 10 AB1 ALA B 58 ALA B 60 5 3 HELIX 11 AB2 THR B 61 LEU B 73 1 13 HELIX 12 AB3 ASP B 76 PHE B 80 5 5 HELIX 13 AB4 ASP B 102 HIS B 110 1 9 HELIX 14 AB5 ASN B 114 THR B 118 5 5 SHEET 1 AA1 6 VAL A4832 HIS A4836 0 SHEET 2 AA1 6 GLY A4821 PHE A4828 -1 N GLY A4827 O PHE A4833 SHEET 3 AA1 6 TYR A4780 ASP A4787 1 N VAL A4786 O MET A4826 SHEET 4 AA1 6 TRP A4894 SER A4901 1 O LEU A4898 N CYS A4785 SHEET 5 AA1 6 MET A4926 MET A4932 1 O ILE A4930 N ILE A4899 SHEET 6 AA1 6 TYR A4971 VAL A4974 1 O VAL A4974 N VAL A4931 SHEET 1 AA2 7 PRO A4957 ARG A4961 0 SHEET 2 AA2 7 LYS A4947 PHE A4951 -1 N ARG A4950 O VAL A4958 SHEET 3 AA2 7 VAL B 53 ASN B 56 1 O GLU B 54 N LYS A4947 SHEET 4 AA2 7 SER B 36 ILE B 42 -1 N ALA B 39 O VAL B 53 SHEET 5 AA2 7 ILE B 120 PRO B 126 1 O ILE B 120 N LYS B 38 SHEET 6 AA2 7 TYR B 83 HIS B 88 -1 N ARG B 84 O GLU B 125 SHEET 7 AA2 7 ILE B 95 ILE B 96 -1 O ILE B 96 N ILE B 87 LINK OG SER A4789 MG MG A5101 1555 1555 2.18 LINK OG SER A4791 MG MG A5101 1555 1555 2.27 LINK OG1 THR A4863 MG MG A5101 1555 1555 2.13 LINK MG MG A5101 O HOH A5221 1555 1555 2.09 LINK MG MG A5101 O HOH A5243 1555 1555 2.18 LINK MG MG A5101 OE1 GLU B 117 1555 1555 2.14 SITE 1 AC1 6 SER A4789 SER A4791 THR A4863 HOH A5221 SITE 2 AC1 6 HOH A5243 GLU B 117 SITE 1 AC2 5 TYR A4703 ASP A4831 VAL A4832 ARG A4871 SITE 2 AC2 5 GOL A5106 SITE 1 AC3 5 LYS A4716 ASN A4802 ARG A4936 HOH A5210 SITE 2 AC3 5 HOH A5255 SITE 1 AC4 3 ARG A4729 LYS A4947 ARG A4961 SITE 1 AC5 9 SER A4862 THR A4863 VAL A4905 GLN A4906 SITE 2 AC5 9 ASP A4909 HOH A5209 ASN B 114 PHE B 116 SITE 3 AC5 9 GLU B 117 SITE 1 AC6 5 TYR A4703 THR A4830 GLN A4854 SO4 A5102 SITE 2 AC6 5 HOH A5318 SITE 1 AC7 4 HOH A5224 HOH A5255 PRO B 29 MET B 30 SITE 1 AC8 4 VAL A4834 ALA A4835 ASP A4840 GLN A4855 SITE 1 AC9 3 SER A4845 GLN A4846 ASP A4847 SITE 1 AD1 5 ALA A4719 SER A4942 HIS A4975 HOH A5202 SITE 2 AD1 5 HOH A5303 SITE 1 AD2 2 ARG A4698 GLN A4860 CRYST1 115.675 115.675 74.623 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013401 0.00000