HEADER ISOMERASE 25-FEB-19 6QTK TITLE 2.31A STRUCTURE OF GEPOTIDACIN WITH S.AUREUS DNA GYRASE AND DOUBLY TITLE 2 NICKED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: B, D; COMPND 4 EC: 5.99.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 8 CHAIN: A, C; COMPND 9 EC: 5.99.1.3; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*AP*GP*CP*CP*GP*TP*AP*G*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 14 CHAIN: E, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN N315); SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: GYRB, SA0005; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 10 ORGANISM_TAXID: 1280; SOURCE 11 GENE: GYRA, SA0006; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS INHIBITOR, DNA, COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.D.BAX REVDAT 3 24-JAN-24 6QTK 1 LINK REVDAT 2 24-APR-19 6QTK 1 JRNL REVDAT 1 13-MAR-19 6QTK 0 JRNL AUTH E.G.GIBSON,B.BAX,P.F.CHAN,N.OSHEROFF JRNL TITL MECHANISTIC AND STRUCTURAL BASIS FOR THE ACTIONS OF THE JRNL TITL 2 ANTIBACTERIAL GEPOTIDACIN AGAINST STAPHYLOCOCCUS AUREUS JRNL TITL 3 GYRASE. JRNL REF ACS INFECT DIS. V. 5 570 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 30757898 JRNL DOI 10.1021/ACSINFECDIS.8B00315 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 82431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3426 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10625 REMARK 3 NUCLEIC ACID ATOMS : 805 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 823 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12228 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16707 ; 1.448 ; 1.602 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1412 ; 5.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 672 ;29.731 ;21.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2058 ;13.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 122 ;17.280 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1604 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9114 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5576 ; 2.610 ; 3.383 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7012 ; 3.634 ; 5.059 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6652 ; 3.997 ; 3.661 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 58054 ; 7.833 ;65.368 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 415 640 D 415 640 6081 0.09 0.05 REMARK 3 2 A 9 489 C 9 489 16117 0.08 0.05 REMARK 3 3 E 1 2020 F 1 2020 1541 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85905 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2XCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 5000MME, BISTRIS PH 6.2, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.25833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 272.51667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.38750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 340.64583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.12917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 LEU B 414 REMARK 465 ASN B 641 REMARK 465 LEU B 642 REMARK 465 ASP B 643 REMARK 465 PHE B 644 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 MET D 409 REMARK 465 ASP D 410 REMARK 465 VAL D 411 REMARK 465 ALA D 412 REMARK 465 SER D 413 REMARK 465 LEU D 414 REMARK 465 ASN D 641 REMARK 465 LEU D 642 REMARK 465 ASP D 643 REMARK 465 PHE D 644 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 LEU C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 6 REMARK 465 SER C 7 REMARK 465 ARG C 8 REMARK 465 GLY C 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 417 CG CD CE NZ REMARK 470 LYS B 424 CE NZ REMARK 470 LYS B 607 CE NZ REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 GLN A 413 CG CD OE1 NE2 REMARK 470 LYS D 417 CD CE NZ REMARK 470 LYS D 424 CG CD CE NZ REMARK 470 GLU D 427 CG CD OE1 OE2 REMARK 470 ARG D 468 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 497 CG CD CE NZ REMARK 470 LYS D 607 CG CD CE NZ REMARK 470 ILE C 9 CG1 CG2 CD1 REMARK 470 GLN C 56 CG CD OE1 NE2 REMARK 470 LYS C 227 CE NZ REMARK 470 ARG C 232 NE CZ NH1 NH2 REMARK 470 LEU C 490 CG CD1 CD2 REMARK 470 DT F2020 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F2020 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG F 5 O HOH F 2201 1.82 REMARK 500 O HOH A 853 O HOH A 870 1.91 REMARK 500 O HOH C 879 O HOH C 909 1.92 REMARK 500 OP2 DC F 2013 O HOH F 2202 1.96 REMARK 500 OE1 GLU C 208 O HOH C 601 1.97 REMARK 500 O HOH C 618 O HOH C 862 1.97 REMARK 500 O HOH A 819 O HOH A 867 1.98 REMARK 500 O2 GOL E 2102 O HOH E 2201 2.00 REMARK 500 O HOH D 845 O HOH D 850 2.08 REMARK 500 OP1 DG E 2009 O HOH E 2202 2.10 REMARK 500 O ASP B 437 N GLY B 440 2.11 REMARK 500 O6 DG E 2009 N4 DC F 2012 2.14 REMARK 500 O HOH E 2201 O HOH E 2247 2.18 REMARK 500 O HOH A 798 O HOH E 2250 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 866 O HOH C 885 5554 1.98 REMARK 500 O HOH C 618 O HOH E 2212 1445 2.00 REMARK 500 NH2 ARG C 414 OP1 DT F 2020 1445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 385 CG ARG A 385 CD 0.238 REMARK 500 ARG A 385 CZ ARG A 385 NH1 0.118 REMARK 500 GLY D 545 C TYR D 580 N 0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 545 CA - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 GLY B 545 O - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 GLY D 545 O - C - N ANGL. DEV. = -23.2 DEGREES REMARK 500 DC E2019 O5' - P - OP1 ANGL. DEV. = 9.4 DEGREES REMARK 500 DC F2012 O5' - C5' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC F2019 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 438 -39.52 -36.26 REMARK 500 LEU B 457 -146.54 -86.13 REMARK 500 ARG B 458 58.77 -153.65 REMARK 500 ALA B 509 49.70 -87.03 REMARK 500 ASP B 510 -158.33 -137.97 REMARK 500 MET B 528 41.69 -150.95 REMARK 500 THR B 595 -35.55 -131.91 REMARK 500 GLU B 609 -62.49 -96.27 REMARK 500 ALA A 32 39.20 -145.88 REMARK 500 ARG A 33 -67.92 -161.88 REMARK 500 MET A 58 58.72 -91.68 REMARK 500 MET A 58 58.37 -90.98 REMARK 500 TYR A 78 -31.85 -133.70 REMARK 500 ASP A 138 16.34 82.22 REMARK 500 ALA A 162 72.17 54.46 REMARK 500 ALA A 176 -135.59 -102.50 REMARK 500 ASN A 201 87.45 -161.60 REMARK 500 ALA A 221 -123.94 65.61 REMARK 500 ASP A 311 -0.39 75.33 REMARK 500 PRO A 326 0.50 -67.99 REMARK 500 ASN A 334 86.57 -153.10 REMARK 500 LEU D 457 -146.66 -88.16 REMARK 500 ARG D 458 57.22 -149.56 REMARK 500 MET D 528 41.54 -147.81 REMARK 500 THR D 595 -35.32 -130.58 REMARK 500 GLU D 609 -63.76 -98.84 REMARK 500 ALA C 32 40.27 -148.71 REMARK 500 ARG C 33 -66.35 -160.90 REMARK 500 MET C 58 59.34 -92.89 REMARK 500 MET C 58 55.05 -93.16 REMARK 500 TYR C 78 -33.31 -133.00 REMARK 500 ALA C 162 70.57 53.82 REMARK 500 ALA C 176 -136.84 -104.28 REMARK 500 ASN C 201 87.97 -157.68 REMARK 500 ALA C 221 -124.64 65.72 REMARK 500 ASP C 311 -1.96 74.97 REMARK 500 PRO C 326 0.28 -67.71 REMARK 500 ASN C 334 86.44 -151.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 545 18.31 REMARK 500 GLY D 545 29.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 435 OE2 REMARK 620 2 ASP B 508 OD2 93.4 REMARK 620 3 HOH B 804 O 65.7 99.8 REMARK 620 4 HOH B 849 O 151.3 95.1 85.9 REMARK 620 5 DG E 8 O3' 95.3 169.5 89.2 80.0 REMARK 620 6 HOH E2205 O 109.4 88.8 170.2 98.2 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 508 OD2 REMARK 620 2 ASP B 510 OD2 101.3 REMARK 620 3 LYS B 581 O 65.3 104.3 REMARK 620 4 HOH B 804 O 80.4 91.2 144.4 REMARK 620 5 HOH B 817 O 82.2 175.4 79.9 86.3 REMARK 620 6 HOH B 864 O 159.1 91.5 127.5 83.0 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 322 O REMARK 620 2 THR A 325 O 94.5 REMARK 620 3 GLN A 328 O 111.1 84.5 REMARK 620 4 HOH A 795 O 82.8 173.6 91.0 REMARK 620 5 HOH A 833 O 146.8 83.2 101.7 102.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 435 OE2 REMARK 620 2 ASP D 508 OD2 93.5 REMARK 620 3 HOH D 814 O 76.2 98.5 REMARK 620 4 HOH D 828 O 157.1 88.5 80.9 REMARK 620 5 DG F 8 O3' 91.6 170.7 90.3 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 2102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JHN F 2101 DBREF 6QTK B 409 644 UNP P66937 GYRB_STAAN 409 644 DBREF 6QTK A 2 491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 6QTK D 409 644 UNP P66937 GYRB_STAAN 409 644 DBREF 6QTK C 2 491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 6QTK E 1 2020 PDB 6QTK 6QTK 1 2020 DBREF 6QTK F 1 2020 PDB 6QTK 6QTK 1 2020 SEQADV 6QTK MET B 409 UNP P66937 LEU 409 CONFLICT SEQADV 6QTK B UNP P66937 LEU 544 DELETION SEQADV 6QTK B UNP P66937 TYR 545 DELETION SEQADV 6QTK B UNP P66937 LYS 546 DELETION SEQADV 6QTK B UNP P66937 LEU 547 DELETION SEQADV 6QTK B UNP P66937 THR 548 DELETION SEQADV 6QTK B UNP P66937 GLN 549 DELETION SEQADV 6QTK B UNP P66937 GLY 550 DELETION SEQADV 6QTK B UNP P66937 LYS 551 DELETION SEQADV 6QTK B UNP P66937 GLN 552 DELETION SEQADV 6QTK B UNP P66937 LYS 553 DELETION SEQADV 6QTK B UNP P66937 TYR 554 DELETION SEQADV 6QTK B UNP P66937 TYR 555 DELETION SEQADV 6QTK B UNP P66937 VAL 556 DELETION SEQADV 6QTK B UNP P66937 TYR 557 DELETION SEQADV 6QTK B UNP P66937 ASN 558 DELETION SEQADV 6QTK B UNP P66937 ASP 559 DELETION SEQADV 6QTK B UNP P66937 ARG 560 DELETION SEQADV 6QTK B UNP P66937 GLU 561 DELETION SEQADV 6QTK B UNP P66937 LEU 562 DELETION SEQADV 6QTK B UNP P66937 ASP 563 DELETION SEQADV 6QTK B UNP P66937 LYS 564 DELETION SEQADV 6QTK B UNP P66937 LEU 565 DELETION SEQADV 6QTK B UNP P66937 LYS 566 DELETION SEQADV 6QTK B UNP P66937 SER 567 DELETION SEQADV 6QTK B UNP P66937 GLU 568 DELETION SEQADV 6QTK B UNP P66937 LEU 569 DELETION SEQADV 6QTK B UNP P66937 ASN 570 DELETION SEQADV 6QTK B UNP P66937 PRO 571 DELETION SEQADV 6QTK B UNP P66937 THR 572 DELETION SEQADV 6QTK B UNP P66937 PRO 573 DELETION SEQADV 6QTK B UNP P66937 LYS 574 DELETION SEQADV 6QTK B UNP P66937 TRP 575 DELETION SEQADV 6QTK B UNP P66937 SER 576 DELETION SEQADV 6QTK B UNP P66937 ILE 577 DELETION SEQADV 6QTK THR B 544 UNP P66937 ALA 578 CONFLICT SEQADV 6QTK GLY B 545 UNP P66937 ARG 579 CONFLICT SEQADV 6QTK PHE A 123 UNP Q99XG5 TYR 123 CONFLICT SEQADV 6QTK MET D 409 UNP P66937 LEU 409 CONFLICT SEQADV 6QTK D UNP P66937 LEU 544 DELETION SEQADV 6QTK D UNP P66937 TYR 545 DELETION SEQADV 6QTK D UNP P66937 LYS 546 DELETION SEQADV 6QTK D UNP P66937 LEU 547 DELETION SEQADV 6QTK D UNP P66937 THR 548 DELETION SEQADV 6QTK D UNP P66937 GLN 549 DELETION SEQADV 6QTK D UNP P66937 GLY 550 DELETION SEQADV 6QTK D UNP P66937 LYS 551 DELETION SEQADV 6QTK D UNP P66937 GLN 552 DELETION SEQADV 6QTK D UNP P66937 LYS 553 DELETION SEQADV 6QTK D UNP P66937 TYR 554 DELETION SEQADV 6QTK D UNP P66937 TYR 555 DELETION SEQADV 6QTK D UNP P66937 VAL 556 DELETION SEQADV 6QTK D UNP P66937 TYR 557 DELETION SEQADV 6QTK D UNP P66937 ASN 558 DELETION SEQADV 6QTK D UNP P66937 ASP 559 DELETION SEQADV 6QTK D UNP P66937 ARG 560 DELETION SEQADV 6QTK D UNP P66937 GLU 561 DELETION SEQADV 6QTK D UNP P66937 LEU 562 DELETION SEQADV 6QTK D UNP P66937 ASP 563 DELETION SEQADV 6QTK D UNP P66937 LYS 564 DELETION SEQADV 6QTK D UNP P66937 LEU 565 DELETION SEQADV 6QTK D UNP P66937 LYS 566 DELETION SEQADV 6QTK D UNP P66937 SER 567 DELETION SEQADV 6QTK D UNP P66937 GLU 568 DELETION SEQADV 6QTK D UNP P66937 LEU 569 DELETION SEQADV 6QTK D UNP P66937 ASN 570 DELETION SEQADV 6QTK D UNP P66937 PRO 571 DELETION SEQADV 6QTK D UNP P66937 THR 572 DELETION SEQADV 6QTK D UNP P66937 PRO 573 DELETION SEQADV 6QTK D UNP P66937 LYS 574 DELETION SEQADV 6QTK D UNP P66937 TRP 575 DELETION SEQADV 6QTK D UNP P66937 SER 576 DELETION SEQADV 6QTK D UNP P66937 ILE 577 DELETION SEQADV 6QTK THR D 544 UNP P66937 ALA 578 CONFLICT SEQADV 6QTK GLY D 545 UNP P66937 ARG 579 CONFLICT SEQADV 6QTK PHE C 123 UNP Q99XG5 TYR 123 CONFLICT SEQRES 1 B 202 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 B 202 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 B 202 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 B 202 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 B 202 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 B 202 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 B 202 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 B 202 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 B 202 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 B 202 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 B 202 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 B 202 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 B 202 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 B 202 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 B 202 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 B 202 VAL TYR ALA ASN LEU ASP PHE SEQRES 1 A 490 ALA GLU LEU PRO GLN SER ARG ILE ASN GLU ARG ASN ILE SEQRES 2 A 490 THR SER GLU MET ARG GLU SER PHE LEU ASP TYR ALA MET SEQRES 3 A 490 SER VAL ILE VAL ALA ARG ALA LEU PRO ASP VAL ARG ASP SEQRES 4 A 490 GLY LEU LYS PRO VAL HIS ARG ARG ILE LEU TYR GLY LEU SEQRES 5 A 490 ASN GLU GLN GLY MET THR PRO ASP LYS SER TYR LYS LYS SEQRES 6 A 490 SER ALA ARG ILE VAL GLY ASP VAL MET GLY LYS TYR HIS SEQRES 7 A 490 PRO HIS GLY ASP SER SER ILE TYR GLU ALA MET VAL ARG SEQRES 8 A 490 MET ALA GLN ASP PHE SER TYR ARG TYR PRO LEU VAL ASP SEQRES 9 A 490 GLY GLN GLY ASN PHE GLY SER MET ASP GLY ASP GLY ALA SEQRES 10 A 490 ALA ALA MET ARG PHE THR GLU ALA ARG MET THR LYS ILE SEQRES 11 A 490 THR LEU GLU LEU LEU ARG ASP ILE ASN LYS ASP THR ILE SEQRES 12 A 490 ASP PHE ILE ASP ASN TYR ASP GLY ASN GLU ARG GLU PRO SEQRES 13 A 490 SER VAL LEU PRO ALA ARG PHE PRO ASN LEU LEU ALA ASN SEQRES 14 A 490 GLY ALA SER GLY ILE ALA VAL GLY MET ALA THR ASN ILE SEQRES 15 A 490 PRO PRO HIS ASN LEU THR GLU LEU ILE ASN GLY VAL LEU SEQRES 16 A 490 SER LEU SER LYS ASN PRO ASP ILE SER ILE ALA GLU LEU SEQRES 17 A 490 MET GLU ASP ILE GLU GLY PRO ASP PHE PRO THR ALA GLY SEQRES 18 A 490 LEU ILE LEU GLY LYS SER GLY ILE ARG ARG ALA TYR GLU SEQRES 19 A 490 THR GLY ARG GLY SER ILE GLN MET ARG SER ARG ALA VAL SEQRES 20 A 490 ILE GLU GLU ARG GLY GLY GLY ARG GLN ARG ILE VAL VAL SEQRES 21 A 490 THR GLU ILE PRO PHE GLN VAL ASN LYS ALA ARG MET ILE SEQRES 22 A 490 GLU LYS ILE ALA GLU LEU VAL ARG ASP LYS LYS ILE ASP SEQRES 23 A 490 GLY ILE THR ASP LEU ARG ASP GLU THR SER LEU ARG THR SEQRES 24 A 490 GLY VAL ARG VAL VAL ILE ASP VAL ARG LYS ASP ALA ASN SEQRES 25 A 490 ALA SER VAL ILE LEU ASN ASN LEU TYR LYS GLN THR PRO SEQRES 26 A 490 LEU GLN THR SER PHE GLY VAL ASN MET ILE ALA LEU VAL SEQRES 27 A 490 ASN GLY ARG PRO LYS LEU ILE ASN LEU LYS GLU ALA LEU SEQRES 28 A 490 VAL HIS TYR LEU GLU HIS GLN LYS THR VAL VAL ARG ARG SEQRES 29 A 490 ARG THR GLN TYR ASN LEU ARG LYS ALA LYS ASP ARG ALA SEQRES 30 A 490 HIS ILE LEU GLU GLY LEU ARG ILE ALA LEU ASP HIS ILE SEQRES 31 A 490 ASP GLU ILE ILE SER THR ILE ARG GLU SER ASP THR ASP SEQRES 32 A 490 LYS VAL ALA MET GLU SER LEU GLN GLN ARG PHE LYS LEU SEQRES 33 A 490 SER GLU LYS GLN ALA GLN ALA ILE LEU ASP MET ARG LEU SEQRES 34 A 490 ARG ARG LEU THR GLY LEU GLU ARG ASP LYS ILE GLU ALA SEQRES 35 A 490 GLU TYR ASN GLU LEU LEU ASN TYR ILE SER GLU LEU GLU SEQRES 36 A 490 THR ILE LEU ALA ASP GLU GLU VAL LEU LEU GLN LEU VAL SEQRES 37 A 490 ARG ASP GLU LEU THR GLU ILE ARG ASP ARG PHE GLY ASP SEQRES 38 A 490 ASP ARG ARG THR GLU ILE GLN LEU GLY SEQRES 1 D 202 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 D 202 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 D 202 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 D 202 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 D 202 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 D 202 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 D 202 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 D 202 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 D 202 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 D 202 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 D 202 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 D 202 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 D 202 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 D 202 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 D 202 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 D 202 VAL TYR ALA ASN LEU ASP PHE SEQRES 1 C 490 ALA GLU LEU PRO GLN SER ARG ILE ASN GLU ARG ASN ILE SEQRES 2 C 490 THR SER GLU MET ARG GLU SER PHE LEU ASP TYR ALA MET SEQRES 3 C 490 SER VAL ILE VAL ALA ARG ALA LEU PRO ASP VAL ARG ASP SEQRES 4 C 490 GLY LEU LYS PRO VAL HIS ARG ARG ILE LEU TYR GLY LEU SEQRES 5 C 490 ASN GLU GLN GLY MET THR PRO ASP LYS SER TYR LYS LYS SEQRES 6 C 490 SER ALA ARG ILE VAL GLY ASP VAL MET GLY LYS TYR HIS SEQRES 7 C 490 PRO HIS GLY ASP SER SER ILE TYR GLU ALA MET VAL ARG SEQRES 8 C 490 MET ALA GLN ASP PHE SER TYR ARG TYR PRO LEU VAL ASP SEQRES 9 C 490 GLY GLN GLY ASN PHE GLY SER MET ASP GLY ASP GLY ALA SEQRES 10 C 490 ALA ALA MET ARG PHE THR GLU ALA ARG MET THR LYS ILE SEQRES 11 C 490 THR LEU GLU LEU LEU ARG ASP ILE ASN LYS ASP THR ILE SEQRES 12 C 490 ASP PHE ILE ASP ASN TYR ASP GLY ASN GLU ARG GLU PRO SEQRES 13 C 490 SER VAL LEU PRO ALA ARG PHE PRO ASN LEU LEU ALA ASN SEQRES 14 C 490 GLY ALA SER GLY ILE ALA VAL GLY MET ALA THR ASN ILE SEQRES 15 C 490 PRO PRO HIS ASN LEU THR GLU LEU ILE ASN GLY VAL LEU SEQRES 16 C 490 SER LEU SER LYS ASN PRO ASP ILE SER ILE ALA GLU LEU SEQRES 17 C 490 MET GLU ASP ILE GLU GLY PRO ASP PHE PRO THR ALA GLY SEQRES 18 C 490 LEU ILE LEU GLY LYS SER GLY ILE ARG ARG ALA TYR GLU SEQRES 19 C 490 THR GLY ARG GLY SER ILE GLN MET ARG SER ARG ALA VAL SEQRES 20 C 490 ILE GLU GLU ARG GLY GLY GLY ARG GLN ARG ILE VAL VAL SEQRES 21 C 490 THR GLU ILE PRO PHE GLN VAL ASN LYS ALA ARG MET ILE SEQRES 22 C 490 GLU LYS ILE ALA GLU LEU VAL ARG ASP LYS LYS ILE ASP SEQRES 23 C 490 GLY ILE THR ASP LEU ARG ASP GLU THR SER LEU ARG THR SEQRES 24 C 490 GLY VAL ARG VAL VAL ILE ASP VAL ARG LYS ASP ALA ASN SEQRES 25 C 490 ALA SER VAL ILE LEU ASN ASN LEU TYR LYS GLN THR PRO SEQRES 26 C 490 LEU GLN THR SER PHE GLY VAL ASN MET ILE ALA LEU VAL SEQRES 27 C 490 ASN GLY ARG PRO LYS LEU ILE ASN LEU LYS GLU ALA LEU SEQRES 28 C 490 VAL HIS TYR LEU GLU HIS GLN LYS THR VAL VAL ARG ARG SEQRES 29 C 490 ARG THR GLN TYR ASN LEU ARG LYS ALA LYS ASP ARG ALA SEQRES 30 C 490 HIS ILE LEU GLU GLY LEU ARG ILE ALA LEU ASP HIS ILE SEQRES 31 C 490 ASP GLU ILE ILE SER THR ILE ARG GLU SER ASP THR ASP SEQRES 32 C 490 LYS VAL ALA MET GLU SER LEU GLN GLN ARG PHE LYS LEU SEQRES 33 C 490 SER GLU LYS GLN ALA GLN ALA ILE LEU ASP MET ARG LEU SEQRES 34 C 490 ARG ARG LEU THR GLY LEU GLU ARG ASP LYS ILE GLU ALA SEQRES 35 C 490 GLU TYR ASN GLU LEU LEU ASN TYR ILE SER GLU LEU GLU SEQRES 36 C 490 THR ILE LEU ALA ASP GLU GLU VAL LEU LEU GLN LEU VAL SEQRES 37 C 490 ARG ASP GLU LEU THR GLU ILE ARG ASP ARG PHE GLY ASP SEQRES 38 C 490 ASP ARG ARG THR GLU ILE GLN LEU GLY SEQRES 1 E 20 DA DG DC DC DG DT DA DG DG DT DA DC DC SEQRES 2 E 20 DT DA DC DG DG DC DT SEQRES 1 F 20 DA DG DC DC DG DT DA DG DG DT DA DC DC SEQRES 2 F 20 DT DA DC DG DG DC DT HET MN B 701 2 HET GOL A 501 6 HET NA A 502 1 HET GOL A 503 6 HET MN D 701 1 HET GOL C 501 6 HET GOL C 502 6 HET GOL C 503 6 HET GOL C 504 6 HET GOL E2101 12 HET GOL E2102 6 HET JHN F2101 66 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM JHN (3~{R})-3-[[4-(3,4-DIHYDRO-2~{H}-PYRANO[2,3-C]PYRIDIN- HETNAM 2 JHN 6-YLMETHYLAMINO)PIPERIDIN-1-YL]METHYL]-1,4,7- HETNAM 3 JHN TRIAZATRICYCLO[6.3.1.0^{4,12}]DODECA-6,8(12),9-TRIENE- HETNAM 4 JHN 5,11-DIONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 MN 2(MN 2+) FORMUL 8 GOL 8(C3 H8 O3) FORMUL 9 NA NA 1+ FORMUL 18 JHN C24 H28 N6 O3 FORMUL 19 HOH *823(H2 O) HELIX 1 AA1 SER B 425 GLU B 428 5 4 HELIX 2 AA2 GLY B 436 ARG B 447 1 12 HELIX 3 AA3 ARG B 468 ASN B 475 1 8 HELIX 4 AA4 ASN B 475 GLY B 486 1 12 HELIX 5 AA5 ILE B 489 PHE B 493 5 5 HELIX 6 AA6 ASP B 494 ALA B 498 5 5 HELIX 7 AA7 ASP B 510 MET B 528 1 19 HELIX 8 AA8 MET B 528 ALA B 534 1 7 HELIX 9 AA9 GLY B 582 MET B 586 5 5 HELIX 10 AB1 ASN B 587 MET B 596 1 10 HELIX 11 AB2 ASP B 610 GLY B 623 1 14 HELIX 12 AB3 VAL B 625 ALA B 637 1 13 HELIX 13 AB4 ILE A 14 ARG A 33 1 20 HELIX 14 AB5 LYS A 43 GLN A 56 1 14 HELIX 15 AB6 SER A 67 TYR A 78 1 12 HELIX 16 AB7 GLY A 82 ALA A 94 1 13 HELIX 17 AB8 THR A 129 ARG A 137 1 9 HELIX 18 AB9 PRO A 165 GLY A 171 1 7 HELIX 19 AC1 ASN A 187 LYS A 200 1 14 HELIX 20 AC2 SER A 205 MET A 210 1 6 HELIX 21 AC3 LYS A 227 GLY A 237 1 11 HELIX 22 AC4 ASN A 269 ASP A 283 1 15 HELIX 23 AC5 ASN A 313 THR A 325 1 13 HELIX 24 AC6 ASN A 347 HIS A 390 1 44 HELIX 25 AC7 HIS A 390 GLU A 400 1 11 HELIX 26 AC8 THR A 403 LYS A 416 1 14 HELIX 27 AC9 SER A 418 MET A 428 1 11 HELIX 28 AD1 ARG A 429 THR A 434 5 6 HELIX 29 AD2 LEU A 436 ASP A 461 1 26 HELIX 30 AD3 ASP A 461 GLY A 481 1 21 HELIX 31 AD4 SER D 425 GLU D 428 5 4 HELIX 32 AD5 GLY D 436 ARG D 447 1 12 HELIX 33 AD6 ARG D 468 ASN D 475 1 8 HELIX 34 AD7 ASN D 475 GLY D 486 1 12 HELIX 35 AD8 ILE D 489 PHE D 493 5 5 HELIX 36 AD9 ASP D 494 ALA D 498 5 5 HELIX 37 AE1 ASP D 510 MET D 528 1 19 HELIX 38 AE2 MET D 528 ALA D 534 1 7 HELIX 39 AE3 GLY D 582 MET D 586 5 5 HELIX 40 AE4 ASN D 587 MET D 596 1 10 HELIX 41 AE5 ASP D 610 GLY D 623 1 14 HELIX 42 AE6 VAL D 625 ALA D 637 1 13 HELIX 43 AE7 ILE C 14 ARG C 33 1 20 HELIX 44 AE8 LYS C 43 GLN C 56 1 14 HELIX 45 AE9 SER C 67 TYR C 78 1 12 HELIX 46 AF1 GLY C 82 ALA C 94 1 13 HELIX 47 AF2 THR C 129 ARG C 137 1 9 HELIX 48 AF3 PRO C 165 GLY C 171 1 7 HELIX 49 AF4 ASN C 187 ASN C 201 1 15 HELIX 50 AF5 SER C 205 MET C 210 1 6 HELIX 51 AF6 LYS C 227 GLY C 237 1 11 HELIX 52 AF7 ASN C 269 ASP C 283 1 15 HELIX 53 AF8 ASN C 313 THR C 325 1 13 HELIX 54 AF9 ASN C 347 HIS C 390 1 44 HELIX 55 AG1 HIS C 390 GLU C 400 1 11 HELIX 56 AG2 THR C 403 LYS C 416 1 14 HELIX 57 AG3 SER C 418 MET C 428 1 11 HELIX 58 AG4 ARG C 429 LEU C 433 5 5 HELIX 59 AG5 THR C 434 ASP C 461 1 28 HELIX 60 AG6 ASP C 461 GLY C 481 1 21 SHEET 1 AA1 6 GLN B 452 PRO B 456 0 SHEET 2 AA1 6 GLU B 430 VAL B 434 1 N GLU B 430 O ALA B 453 SHEET 3 AA1 6 LYS B 502 ILE B 505 1 O VAL B 504 N ILE B 431 SHEET 4 AA1 6 VAL B 537 ILE B 539 1 O TYR B 538 N ILE B 503 SHEET 5 AA1 6 LEU B 604 LYS B 607 -1 O VAL B 606 N VAL B 537 SHEET 6 AA1 6 ASN A 10 ASN A 13 1 O ARG A 12 N LYS B 607 SHEET 1 AA2 3 LYS A 65 LYS A 66 0 SHEET 2 AA2 3 GLU A 125 MET A 128 -1 O ALA A 126 N LYS A 65 SHEET 3 AA2 3 VAL A 104 GLN A 107 -1 N ASP A 105 O ARG A 127 SHEET 1 AA3 2 PHE A 146 ASP A 148 0 SHEET 2 AA3 2 ARG A 155 PRO A 157 -1 O GLU A 156 N ILE A 147 SHEET 1 AA4 2 ALA A 172 ILE A 175 0 SHEET 2 AA4 2 ALA A 180 ILE A 183 -1 O ILE A 183 N ALA A 172 SHEET 1 AA5 4 GLN A 328 ASN A 334 0 SHEET 2 AA5 4 ARG A 238 ARG A 244 -1 N MET A 243 O THR A 329 SHEET 3 AA5 4 LEU A 223 LEU A 225 -1 N LEU A 223 O ARG A 244 SHEET 4 AA5 4 GLU A 487 GLN A 489 1 O GLN A 489 N ILE A 224 SHEET 1 AA6 4 ARG A 246 GLY A 253 0 SHEET 2 AA6 4 ARG A 256 GLU A 263 -1 O VAL A 260 N VAL A 248 SHEET 3 AA6 4 VAL A 304 VAL A 308 -1 O ILE A 306 N ILE A 259 SHEET 4 AA6 4 ILE A 289 ASP A 294 -1 N ARG A 293 O VAL A 305 SHEET 1 AA7 2 ILE A 336 VAL A 339 0 SHEET 2 AA7 2 ARG A 342 LEU A 345 -1 O ARG A 342 N VAL A 339 SHEET 1 AA8 6 GLN D 452 PRO D 456 0 SHEET 2 AA8 6 GLU D 430 VAL D 434 1 N GLU D 430 O ALA D 453 SHEET 3 AA8 6 LYS D 502 ILE D 505 1 O VAL D 504 N ILE D 431 SHEET 4 AA8 6 VAL D 537 ILE D 539 1 O TYR D 538 N ILE D 503 SHEET 5 AA8 6 LEU D 604 LYS D 607 -1 O VAL D 606 N VAL D 537 SHEET 6 AA8 6 ASN C 10 ASN C 13 1 O ARG C 12 N GLN D 605 SHEET 1 AA9 3 LYS C 65 LYS C 66 0 SHEET 2 AA9 3 GLU C 125 MET C 128 -1 O ALA C 126 N LYS C 65 SHEET 3 AA9 3 VAL C 104 GLN C 107 -1 N ASP C 105 O ARG C 127 SHEET 1 AB1 2 PHE C 146 ASP C 148 0 SHEET 2 AB1 2 ARG C 155 PRO C 157 -1 O GLU C 156 N ILE C 147 SHEET 1 AB2 2 ALA C 172 ILE C 175 0 SHEET 2 AB2 2 ALA C 180 ILE C 183 -1 O ILE C 183 N ALA C 172 SHEET 1 AB3 4 GLN C 328 ASN C 334 0 SHEET 2 AB3 4 ARG C 238 ARG C 244 -1 N MET C 243 O THR C 329 SHEET 3 AB3 4 LEU C 223 LEU C 225 -1 N LEU C 223 O ARG C 244 SHEET 4 AB3 4 GLU C 487 GLN C 489 1 O GLN C 489 N ILE C 224 SHEET 1 AB4 4 ARG C 246 GLY C 253 0 SHEET 2 AB4 4 ARG C 256 GLU C 263 -1 O VAL C 260 N VAL C 248 SHEET 3 AB4 4 VAL C 304 VAL C 308 -1 O ILE C 306 N ILE C 259 SHEET 4 AB4 4 ILE C 289 ASP C 294 -1 N ARG C 293 O VAL C 305 SHEET 1 AB5 2 ILE C 336 VAL C 339 0 SHEET 2 AB5 2 ARG C 342 LEU C 345 -1 O ARG C 342 N VAL C 339 LINK OE2AGLU B 435 MN A MN B 701 1555 1555 2.18 LINK OD2AASP B 508 MN A MN B 701 1555 1555 1.94 LINK OD2BASP B 508 MN B MN B 701 1555 1555 2.65 LINK OD2BASP B 510 MN B MN B 701 1555 1555 2.32 LINK O LYS B 581 MN B MN B 701 1555 1555 2.20 LINK MN A MN B 701 O AHOH B 804 1555 1555 2.39 LINK MN B MN B 701 O BHOH B 804 1555 1555 2.21 LINK MN B MN B 701 O BHOH B 817 1555 1555 1.91 LINK MN A MN B 701 O AHOH B 849 1555 1555 2.32 LINK MN B MN B 701 O BHOH B 864 1555 1555 2.11 LINK MN A MN B 701 O3' DG E 8 1555 1555 2.37 LINK MN A MN B 701 O HOH E2205 1555 1555 1.96 LINK O TYR A 322 NA NA A 502 1555 1555 2.32 LINK O THR A 325 NA NA A 502 1555 1555 2.40 LINK O GLN A 328 NA NA A 502 1555 1555 2.41 LINK NA NA A 502 O HOH A 795 1555 1555 2.24 LINK NA NA A 502 O HOH A 833 1555 1555 2.46 LINK OE2 GLU D 435 MN MN D 701 1555 1555 2.16 LINK OD2 ASP D 508 MN MN D 701 1555 1555 1.98 LINK MN MN D 701 O HOH D 814 1555 1555 2.42 LINK MN MN D 701 O HOH D 828 1555 1555 2.20 LINK MN MN D 701 O3' DG F 8 1555 1555 2.39 SITE 1 AC1 11 GLU B 435 ASP B 508 ASP B 510 LYS B 581 SITE 2 AC1 11 HOH B 804 HOH B 817 HOH B 849 HOH B 864 SITE 3 AC1 11 DG E 8 DG E2009 HOH E2205 SITE 1 AC2 6 LYS A 65 LYS A 66 ARG A 69 HOH A 664 SITE 2 AC2 6 ASP C 73 GLY C 76 SITE 1 AC3 5 TYR A 322 THR A 325 GLN A 328 HOH A 795 SITE 2 AC3 5 HOH A 833 SITE 1 AC4 6 SER A 112 GLY A 115 GLN A 267 HOH A 620 SITE 2 AC4 6 DC E 4 HOH E2203 SITE 1 AC5 6 GLU D 435 ASP D 508 HOH D 814 HOH D 828 SITE 2 AC5 6 DG F 8 DG F2009 SITE 1 AC6 7 PRO C 44 ARG C 47 ARG C 48 GLU C 156 SITE 2 AC6 7 PRO C 157 HOH C 655 HOH C 794 SITE 1 AC7 9 ARG A 244 ASN A 319 GLU C 251 GLY C 255 SITE 2 AC7 9 ARG C 256 GLN C 257 HOH C 611 HOH C 617 SITE 3 AC7 9 HOH C 764 SITE 1 AC8 4 GLY C 152 ASN C 153 GLU C 154 ARG C 155 SITE 1 AC9 4 GLU B 585 GLN C 107 GLU C 125 HOH C 802 SITE 1 AD1 8 SER A 84 DA E 7 DG E 8 DG E2009 SITE 2 AD1 8 DT E2010 HOH E2206 HOH E2210 HOH E2243 SITE 1 AD2 4 DG E2018 HOH E2201 HOH E2228 HOH E2247 SITE 1 AD3 15 ALA A 68 MET A 75 ASP A 83 MET A 121 SITE 2 AD3 15 HOH A 794 ALA C 68 MET C 75 ASP C 83 SITE 3 AD3 15 MET C 121 HOH C 788 DT E2010 DA E2011 SITE 4 AD3 15 DT F2010 DA F2011 HOH F2214 CRYST1 92.730 92.730 408.775 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010784 0.006226 0.000000 0.00000 SCALE2 0.000000 0.012452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002446 0.00000