HEADER LIGASE 26-FEB-19 6QU1 TITLE CRYSTAL STRUCTURE OF THE KAP1 RBCC DOMAIN IN COMPLEX WITH THE SMARCAD1 TITLE 2 CUE1 DOMAIN AT 3.7 ANGSTROM RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INTERMEDIARY FACTOR 1-BETA,TRANSCRIPTION COMPND 3 INTERMEDIARY FACTOR 1-BETA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TIF1-BETA,E3 SUMO-PROTEIN LIGASE TRIM28,KRAB-ASSOCIATED COMPND 6 PROTEIN 1,KAP-1,KRAB-INTERACTING PROTEIN 1,KRIP-1,NUCLEAR COREPRESSOR COMPND 7 KAP-1,RING FINGER PROTEIN 96,RING-TYPE E3 UBIQUITIN TRANSFERASE TIF1- COMPND 8 BETA,TRIPARTITE MOTIF-CONTAINING PROTEIN 28,TIF1-BETA,E3 SUMO-PROTEIN COMPND 9 LIGASE TRIM28,KRAB-ASSOCIATED PROTEIN 1,KAP-1,KRAB-INTERACTING COMPND 10 PROTEIN 1,KRIP-1,NUCLEAR COREPRESSOR KAP-1,RING FINGER PROTEIN 96, COMPND 11 RING-TYPE E3 UBIQUITIN TRANSFERASE TIF1-BETA,TRIPARTITE MOTIF- COMPND 12 CONTAINING PROTEIN 28; COMPND 13 EC: 2.3.2.27,2.3.2.27; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: THE PROTEIN IS A CONSTRUCT WITH AN INTERNAL DELETION COMPND 16 OF RESIDUES 141-202,THE PROTEIN IS A CONSTRUCT WITH AN INTERNAL COMPND 17 DELETION OF RESIDUES 141-202,THE PROTEIN IS A CONSTRUCT WITH AN COMPND 18 INTERNAL DELETION OF RESIDUES 141-202,THE PROTEIN IS A CONSTRUCT WITH COMPND 19 AN INTERNAL DELETION OF RESIDUES 141-202,THE PROTEIN IS A CONSTRUCT COMPND 20 WITH AN INTERNAL DELETION OF RESIDUES 141-202,THE PROTEIN IS A COMPND 21 CONSTRUCT WITH AN INTERNAL DELETION OF RESIDUES 141-202; COMPND 22 MOL_ID: 2; COMPND 23 MOLECULE: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR COMPND 24 OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1; COMPND 25 CHAIN: D; COMPND 26 SYNONYM: ATP-DEPENDENT HELICASE 1,HHEL1; COMPND 27 EC: 3.6.4.12; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM28, KAP1, RNF96, TIF1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SMARCAD1, KIAA1122; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIM28, TRANSCRIPTIONAL CO-REPRESSOR, CUE DOMAIN, UBUIQUITIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,H.AITKENHEAD,A.GAVARD,M.LIM,H.L.WILLIAMS,J.Q.SVEJSTRUP, AUTHOR 2 F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI REVDAT 2 24-JAN-24 6QU1 1 REMARK REVDAT 1 17-JUL-19 6QU1 0 JRNL AUTH M.LIM,J.A.NEWMAN,H.L.WILLIAMS,L.MASINO,H.AITKENHEAD, JRNL AUTH 2 A.E.GRAVARD,O.GILEADI,J.Q.SVEJSTRUP JRNL TITL A UBIQUITIN-BINDING DOMAIN THAT BINDS A STRUCTURAL FOLD JRNL TITL 2 DISTINCT FROM THAT OF UBIQUITIN. JRNL REF STRUCTURE 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31204252 JRNL DOI 10.1016/J.STR.2019.05.003 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 7061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.304 REMARK 3 R VALUE (WORKING SET) : 0.300 REMARK 3 FREE R VALUE : 0.346 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.8950 - 3.7000 0.96 0 0 0.3860 0.3752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2477 REMARK 3 ANGLE : 0.678 3344 REMARK 3 CHIRALITY : 0.039 389 REMARK 3 PLANARITY : 0.005 430 REMARK 3 DIHEDRAL : 21.288 1531 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7157 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.431 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.23500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 2.08100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350, 0.1 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.99300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.24800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.24800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.99650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.24800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.24800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 215.98950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.24800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.24800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.99650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.24800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.24800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 215.98950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.99300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 ALA A 56 REMARK 465 GLU A 57 REMARK 465 ALA A 58 REMARK 465 ALA A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 97 REMARK 465 ALA A 98 REMARK 465 ALA A 99 REMARK 465 ALA A 100 REMARK 465 ASN A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 ASP A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 ALA A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 GLY A 112 REMARK 465 SER A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 LYS A 201 REMARK 465 ALA A 202 REMARK 465 GLY A 203 REMARK 465 GLU A 204 REMARK 465 ARG A 205 REMARK 465 THR A 206 REMARK 465 VAL A 207 REMARK 465 TYR A 208 REMARK 465 ALA A 410 REMARK 465 GLU A 411 REMARK 465 ARG A 412 REMARK 465 PRO A 413 REMARK 465 GLY A 414 REMARK 465 THR A 415 REMARK 465 ASN A 416 REMARK 465 SER A 417 REMARK 465 THR A 418 REMARK 465 GLY A 419 REMARK 465 PRO A 420 REMARK 465 ALA A 421 REMARK 465 PRO A 422 REMARK 465 MET A 423 REMARK 465 ALA A 424 REMARK 465 PRO A 425 REMARK 465 PRO A 426 REMARK 465 ARG A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 GLY A 430 REMARK 465 PRO A 431 REMARK 465 LEU A 432 REMARK 465 SER A 433 REMARK 465 LYS A 434 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ASP A 137 CG OD1 OD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 PHE A 391 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 392 CG CD OE1 NE2 REMARK 470 LYS D 161 CG CD CE NZ REMARK 470 LYS D 179 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 65 -152.03 -84.30 REMARK 500 LEU A 72 102.49 -53.68 REMARK 500 LEU A 84 -3.65 81.49 REMARK 500 CYS A 120 -134.86 -80.15 REMARK 500 HIS A 212 34.78 -93.33 REMARK 500 LYS A 213 -134.08 59.76 REMARK 500 VAL A 218 -19.68 -148.20 REMARK 500 ASP A 225 -4.40 66.19 REMARK 500 ASN A 235 -61.70 -95.34 REMARK 500 HIS A 237 60.37 -113.78 REMARK 500 TRP A 398 49.83 -102.00 REMARK 500 LEU D 168 -85.29 -81.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 143.1 REMARK 620 3 CYS A 91 SG 100.1 116.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 HIS A 85 ND1 83.3 REMARK 620 3 CYS A 117 SG 94.1 97.6 REMARK 620 4 CYS A 120 SG 129.7 110.5 129.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 HIS A 212 ND1 107.6 REMARK 620 3 CYS A 229 SG 89.2 103.9 REMARK 620 4 CYS A 232 SG 104.6 101.6 145.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 221 SG REMARK 620 2 HIS A 237 ND1 78.9 REMARK 620 3 HIS A 240 ND1 149.2 99.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1004 DBREF 6QU1 A 53 202 UNP Q13263 TIF1B_HUMAN 53 142 DBREF 6QU1 A 203 434 UNP Q13263 TIF1B_HUMAN 203 434 DBREF 6QU1 D 151 198 UNP Q9H4L7 SMRCD_HUMAN 151 198 SEQRES 1 A 322 GLY GLY GLY ALA GLU ALA LEU GLU LEU LEU GLU HIS CYS SEQRES 2 A 322 GLY VAL CYS ARG GLU ARG LEU ARG PRO GLU ARG GLU PRO SEQRES 3 A 322 ARG LEU LEU PRO CYS LEU HIS SER ALA CYS SER ALA CYS SEQRES 4 A 322 LEU GLY PRO ALA ALA PRO ALA ALA ALA ASN SER SER GLY SEQRES 5 A 322 ASP GLY GLY ALA ALA GLY ASP GLY THR VAL VAL ASP CYS SEQRES 6 A 322 PRO VAL CYS LYS GLN GLN CYS PHE SER LYS ASP ILE VAL SEQRES 7 A 322 GLU ASN TYR PHE MET ARG ASP SER GLY SER LYS ALA GLY SEQRES 8 A 322 GLU ARG THR VAL TYR CYS ASN VAL HIS LYS HIS GLU PRO SEQRES 9 A 322 LEU VAL LEU PHE CYS GLU SER CYS ASP THR LEU THR CYS SEQRES 10 A 322 ARG ASP CYS GLN LEU ASN ALA HIS LYS ASP HIS GLN TYR SEQRES 11 A 322 GLN PHE LEU GLU ASP ALA VAL ARG ASN GLN ARG LYS LEU SEQRES 12 A 322 LEU ALA SER LEU VAL LYS ARG LEU GLY ASP LYS HIS ALA SEQRES 13 A 322 THR LEU GLN LYS SER THR LYS GLU VAL ARG SER SER ILE SEQRES 14 A 322 ARG GLN VAL SER ASP VAL GLN LYS ARG VAL GLN VAL ASP SEQRES 15 A 322 VAL LYS MET ALA ILE LEU GLN ILE MET LYS GLU LEU ASN SEQRES 16 A 322 LYS ARG GLY ARG VAL LEU VAL ASN ASP ALA GLN LYS VAL SEQRES 17 A 322 THR GLU GLY GLN GLN GLU ARG LEU GLU ARG GLN HIS TRP SEQRES 18 A 322 THR MET THR LYS ILE GLN LYS HIS GLN GLU HIS ILE LEU SEQRES 19 A 322 ARG PHE ALA SER TRP ALA LEU GLU SER ASP ASN ASN THR SEQRES 20 A 322 ALA LEU LEU LEU SER LYS LYS LEU ILE TYR PHE GLN LEU SEQRES 21 A 322 HIS ARG ALA LEU LYS MET ILE VAL ASP PRO VAL GLU PRO SEQRES 22 A 322 HIS GLY GLU MET LYS PHE GLN TRP ASP LEU ASN ALA TRP SEQRES 23 A 322 THR LYS SER ALA GLU ALA PHE GLY LYS ILE VAL ALA GLU SEQRES 24 A 322 ARG PRO GLY THR ASN SER THR GLY PRO ALA PRO MET ALA SEQRES 25 A 322 PRO PRO ARG ALA PRO GLY PRO LEU SER LYS SEQRES 1 D 48 LEU SER GLU LEU GLU ASP LEU LYS ASP ALA LYS LEU GLN SEQRES 2 D 48 THR LEU LYS GLU LEU PHE PRO GLN ARG SER ASP ASN ASP SEQRES 3 D 48 LEU LEU LYS LEU ILE GLU SER THR SER THR MET ASP GLY SEQRES 4 D 48 ALA ILE ALA ALA ALA LEU LEU MET PHE HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) HELIX 1 AA1 ARG A 73 ARG A 76 5 4 HELIX 2 AA2 PHE A 125 ILE A 129 5 5 HELIX 3 AA3 ASP A 231 ALA A 236 1 6 HELIX 4 AA4 LEU A 245 SER A 355 1 111 HELIX 5 AA5 THR A 359 SER A 364 1 6 HELIX 6 AA6 LYS A 366 ILE A 379 1 14 HELIX 7 AA7 TRP A 398 VAL A 409 1 12 HELIX 8 AA8 SER D 152 PHE D 169 1 18 HELIX 9 AA9 SER D 173 THR D 184 1 12 HELIX 10 AB1 MET D 187 PHE D 198 1 12 SHEET 1 AA1 3 SER A 86 CYS A 88 0 SHEET 2 AA1 3 PRO A 78 LEU A 80 -1 N ARG A 79 O ALA A 87 SHEET 3 AA1 3 VAL A 130 GLU A 131 -1 O VAL A 130 N LEU A 80 SHEET 1 AA2 3 THR A 226 THR A 228 0 SHEET 2 AA2 3 LEU A 219 CYS A 221 -1 N LEU A 219 O THR A 228 SHEET 3 AA2 3 GLN A 243 PHE A 244 -1 O GLN A 243 N PHE A 220 LINK SG CYS A 65 ZN ZN A1001 1555 1555 2.40 LINK SG CYS A 68 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 83 ZN ZN A1002 1555 1555 2.40 LINK ND1 HIS A 85 ZN ZN A1002 1555 1555 2.19 LINK SG CYS A 91 ZN ZN A1001 1555 1555 2.43 LINK SG CYS A 117 ZN ZN A1002 1555 1555 2.43 LINK SG CYS A 120 ZN ZN A1002 1555 1555 2.63 LINK SG CYS A 209 ZN ZN A1003 1555 1555 2.76 LINK ND1 HIS A 212 ZN ZN A1003 1555 1555 2.17 LINK SG CYS A 221 ZN ZN A1004 1555 1555 2.46 LINK SG CYS A 229 ZN ZN A1003 1555 1555 2.39 LINK SG CYS A 232 ZN ZN A1003 1555 1555 2.53 LINK ND1 HIS A 237 ZN ZN A1004 1555 1555 2.39 LINK ND1 HIS A 240 ZN ZN A1004 1555 1555 2.20 SITE 1 AC1 5 CYS A 65 GLY A 66 CYS A 68 CYS A 88 SITE 2 AC1 5 CYS A 91 SITE 1 AC2 4 CYS A 83 HIS A 85 CYS A 117 CYS A 120 SITE 1 AC3 4 CYS A 209 HIS A 212 CYS A 229 CYS A 232 SITE 1 AC4 5 CYS A 221 SER A 223 CYS A 224 HIS A 237 SITE 2 AC4 5 HIS A 240 CRYST1 64.496 64.496 287.986 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003472 0.00000