HEADER OXIDOREDUCTASE 28-FEB-19 6QUN TITLE CRYSTAL STRUCTURE OF ATGAPC1 WITH THE CATALYTIC CYS149 IRREVERSIBLY TITLE 2 OXIDIZED BY H2O2 TREATMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC; COMPND 3 CHAIN: O, R; COMPND 4 SYNONYM: NAD-DEPENDENT GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE C COMPND 5 SUBUNIT 1; COMPND 6 EC: 1.2.1.12; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE CATALYTIC CYSTEINE IS OXIDATED TO SULPHINIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GAPC1, GAPC, GAPDH, AT3G04120, T6K12.26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A(+) KEYWDS ROSSMAN FOLD, NAD BINDING, GLYCOLYTIC PROCESS, OXIDATIVE STRESS, KEYWDS 2 HYDROGEN PEROXIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.FERMANI,M.ZAFFAGNINI,G.FALINI,P.TROST REVDAT 3 24-JAN-24 6QUN 1 REMARK REVDAT 2 25-DEC-19 6QUN 1 JRNL REVDAT 1 04-DEC-19 6QUN 0 JRNL AUTH M.ZAFFAGNINI,C.H.MARCHAND,M.MALFERRARI,S.MURAIL,S.BONACCHI, JRNL AUTH 2 D.GENOVESE,M.MONTALTI,G.VENTUROLI,G.FALINI,M.BAADEN, JRNL AUTH 3 S.D.LEMAIRE,S.FERMANI,P.TROST JRNL TITL GLUTATHIONYLATION PRIMES SOLUBLE GLYCERALDEHYDE-3-PHOSPHATE JRNL TITL 2 DEHYDROGENASE FOR LATE COLLAPSE INTO INSOLUBLE AGGREGATES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 26057 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31772010 JRNL DOI 10.1073/PNAS.1914484116 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7912 - 6.4590 1.00 2597 144 0.1821 0.2174 REMARK 3 2 6.4590 - 5.1286 1.00 2634 122 0.2035 0.2908 REMARK 3 3 5.1286 - 4.4809 1.00 2643 128 0.1807 0.2233 REMARK 3 4 4.4809 - 4.0714 1.00 2587 120 0.1987 0.2837 REMARK 3 5 4.0714 - 3.7797 1.00 2649 158 0.2437 0.3304 REMARK 3 6 3.7797 - 3.5569 1.00 2586 135 0.2642 0.3150 REMARK 3 7 3.5569 - 3.3789 1.00 2573 158 0.2831 0.3456 REMARK 3 8 3.3789 - 3.2318 1.00 2620 133 0.2729 0.3422 REMARK 3 9 3.2318 - 3.1074 1.00 2555 157 0.2943 0.3377 REMARK 3 10 3.1074 - 3.0002 1.00 2661 116 0.3411 0.4481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5360 REMARK 3 ANGLE : 0.932 7276 REMARK 3 CHIRALITY : 0.057 832 REMARK 3 PLANARITY : 0.007 906 REMARK 3 DIHEDRAL : 6.192 3186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN O AND RESSEQ 0:337) OR (CHAIN R AND RESSEQ REMARK 3 0:337) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4077 37.1100 236.3742 REMARK 3 T TENSOR REMARK 3 T11: 0.4902 T22: 0.6789 REMARK 3 T33: 0.3243 T12: -0.0776 REMARK 3 T13: -0.0111 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.7680 L22: 0.8754 REMARK 3 L33: 3.0027 L12: -0.2203 REMARK 3 L13: 0.0211 L23: 0.3847 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.1189 S13: 0.1760 REMARK 3 S21: 0.0492 S22: -0.1132 S23: 0.1724 REMARK 3 S31: -0.5829 S32: -0.5358 S33: 0.1271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.26 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : CILINDRICAL MIRROR WITH 50 NM PT REMARK 200 -COATING, ORIDAL MIRROS WITH 50 REMARK 200 NM PT-COATING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15798 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4Z0H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M (NH4)2SO4, 0.1 M HEPES-NAOH (PH REMARK 280 7.5), 0.1 MM H2O2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.78200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 271.56400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 203.67300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 339.45500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.89100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.78200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 271.56400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 339.45500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 203.67300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.89100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -318.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 475.23700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 O 404 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH O 509 O HOH O 513 1.93 REMARK 500 O3 SO4 R 404 O HOH R 501 2.10 REMARK 500 O GLY R 209 O HOH R 502 2.18 REMARK 500 O GLY O 7 OG SER O 95 2.19 REMARK 500 O GLY R 7 OG SER R 95 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS O 53 -142.46 -135.33 REMARK 500 LEU O 56 -149.41 -168.55 REMARK 500 ILE O 58 -78.51 -112.44 REMARK 500 ASP O 60 75.43 -42.79 REMARK 500 GLU O 61 -152.88 69.14 REMARK 500 LYS O 62 -42.41 56.29 REMARK 500 PHE O 66 71.55 -103.90 REMARK 500 GLU O 80 -155.28 -89.76 REMARK 500 ASP O 81 4.98 53.26 REMARK 500 GLU O 86 42.52 -73.31 REMARK 500 ALA O 87 -57.78 -164.62 REMARK 500 SER O 119 46.79 -87.04 REMARK 500 ALA O 120 160.84 179.01 REMARK 500 VAL O 132 -68.39 -125.73 REMARK 500 LEU O 141 92.48 -69.53 REMARK 500 ALA O 147 -146.60 68.76 REMARK 500 SER O 189 60.91 -163.64 REMARK 500 THR O 208 -158.80 -96.51 REMARK 500 LEU O 218 65.09 -160.58 REMARK 500 VAL O 237 132.63 80.16 REMARK 500 SER O 290 133.59 -170.33 REMARK 500 SER O 301 -155.10 -109.73 REMARK 500 ILE R 1 95.45 75.75 REMARK 500 ASN R 54 -149.87 25.72 REMARK 500 GLU R 55 144.09 89.67 REMARK 500 LEU R 56 -159.50 -171.88 REMARK 500 ILE R 58 -71.06 -122.85 REMARK 500 ASP R 60 -66.18 -1.71 REMARK 500 ASP R 81 8.31 -66.23 REMARK 500 ALA R 85 -27.73 71.00 REMARK 500 GLU R 86 -77.76 -64.44 REMARK 500 ALA R 106 20.75 -75.61 REMARK 500 SER R 119 46.61 -87.47 REMARK 500 ALA R 120 161.08 179.54 REMARK 500 VAL R 132 -69.11 -124.99 REMARK 500 LEU R 141 93.09 -67.89 REMARK 500 ALA R 147 -146.33 67.06 REMARK 500 SER R 189 59.54 -157.65 REMARK 500 MET R 190 -30.02 -39.66 REMARK 500 THR R 208 -157.51 -97.53 REMARK 500 LEU R 218 64.57 -161.37 REMARK 500 VAL R 237 135.94 74.87 REMARK 500 SER R 290 132.09 -170.42 REMARK 500 SER R 301 -155.83 -109.42 REMARK 500 LYS R 330 -79.35 -77.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD O 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 O 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 O 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 O 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD R 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 R 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 R 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 R 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 R 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z0H RELATED DB: PDB REMARK 900 THE ENTRY CONTAINS THE REDUCED WOILD-TYPE PROTEIN DBREF 6QUN O 0 331 UNP P25858 G3PC1_ARATH 5 338 DBREF 6QUN R 0 331 UNP P25858 G3PC1_ARATH 5 338 SEQRES 1 O 334 LYS ILE ARG ILE GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 O 334 ARG LEU VAL ALA ARG VAL VAL LEU GLN ARG ASP ASP VAL SEQRES 3 O 334 GLU LEU VAL ALA VAL ASN ASP PRO PHE ILE THR THR GLU SEQRES 4 O 334 TYR MET THR TYR MET PHE LYS TYR ASP SER VAL HIS GLY SEQRES 5 O 334 GLN TRP LYS HIS ASN GLU LEU LYS ILE LYS ASP GLU LYS SEQRES 6 O 334 THR LEU LEU PHE GLY GLU LYS PRO VAL THR VAL PHE GLY SEQRES 7 O 334 ILE ARG ASN PRO GLU ASP ILE PRO TRP ALA GLU ALA GLY SEQRES 8 O 334 ALA ASP TYR VAL VAL GLU SER THR GLY VAL PHE THR ASP SEQRES 9 O 334 LYS ASP LYS ALA ALA ALA HIS LEU LYS GLY GLY ALA LYS SEQRES 10 O 334 LYS VAL VAL ILE SER ALA PRO SER LYS ASP ALA PRO MET SEQRES 11 O 334 PHE VAL VAL GLY VAL ASN GLU HIS GLU TYR LYS SER ASP SEQRES 12 O 334 LEU ASP ILE VAL SER ASN ALA SER CSD THR THR ASN CYS SEQRES 13 O 334 LEU ALA PRO LEU ALA LYS VAL ILE ASN ASP ARG PHE GLY SEQRES 14 O 334 ILE VAL GLU GLY LEU MET THR THR VAL HIS SER ILE THR SEQRES 15 O 334 ALA THR GLN LYS THR VAL ASP GLY PRO SER MET LYS ASP SEQRES 16 O 334 TRP ARG GLY GLY ARG ALA ALA SER PHE ASN ILE ILE PRO SEQRES 17 O 334 SER SER THR GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU SEQRES 18 O 334 PRO ALA LEU ASN GLY LYS LEU THR GLY MET SER PHE ARG SEQRES 19 O 334 VAL PRO THR VAL ASP VAL SER VAL VAL ASP LEU THR VAL SEQRES 20 O 334 ARG LEU GLU LYS ALA ALA THR TYR ASP GLU ILE LYS LYS SEQRES 21 O 334 ALA ILE LYS GLU GLU SER GLU GLY LYS LEU LYS GLY ILE SEQRES 22 O 334 LEU GLY TYR THR GLU ASP ASP VAL VAL SER THR ASP PHE SEQRES 23 O 334 VAL GLY ASP ASN ARG SER SER ILE PHE ASP ALA LYS ALA SEQRES 24 O 334 GLY ILE ALA LEU SER ASP LYS PHE VAL LYS LEU VAL SER SEQRES 25 O 334 TRP TYR ASP ASN GLU TRP GLY TYR SER SER ARG VAL VAL SEQRES 26 O 334 ASP LEU ILE VAL HIS MET SER LYS ALA SEQRES 1 R 334 LYS ILE ARG ILE GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 R 334 ARG LEU VAL ALA ARG VAL VAL LEU GLN ARG ASP ASP VAL SEQRES 3 R 334 GLU LEU VAL ALA VAL ASN ASP PRO PHE ILE THR THR GLU SEQRES 4 R 334 TYR MET THR TYR MET PHE LYS TYR ASP SER VAL HIS GLY SEQRES 5 R 334 GLN TRP LYS HIS ASN GLU LEU LYS ILE LYS ASP GLU LYS SEQRES 6 R 334 THR LEU LEU PHE GLY GLU LYS PRO VAL THR VAL PHE GLY SEQRES 7 R 334 ILE ARG ASN PRO GLU ASP ILE PRO TRP ALA GLU ALA GLY SEQRES 8 R 334 ALA ASP TYR VAL VAL GLU SER THR GLY VAL PHE THR ASP SEQRES 9 R 334 LYS ASP LYS ALA ALA ALA HIS LEU LYS GLY GLY ALA LYS SEQRES 10 R 334 LYS VAL VAL ILE SER ALA PRO SER LYS ASP ALA PRO MET SEQRES 11 R 334 PHE VAL VAL GLY VAL ASN GLU HIS GLU TYR LYS SER ASP SEQRES 12 R 334 LEU ASP ILE VAL SER ASN ALA SER CSD THR THR ASN CYS SEQRES 13 R 334 LEU ALA PRO LEU ALA LYS VAL ILE ASN ASP ARG PHE GLY SEQRES 14 R 334 ILE VAL GLU GLY LEU MET THR THR VAL HIS SER ILE THR SEQRES 15 R 334 ALA THR GLN LYS THR VAL ASP GLY PRO SER MET LYS ASP SEQRES 16 R 334 TRP ARG GLY GLY ARG ALA ALA SER PHE ASN ILE ILE PRO SEQRES 17 R 334 SER SER THR GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU SEQRES 18 R 334 PRO ALA LEU ASN GLY LYS LEU THR GLY MET SER PHE ARG SEQRES 19 R 334 VAL PRO THR VAL ASP VAL SER VAL VAL ASP LEU THR VAL SEQRES 20 R 334 ARG LEU GLU LYS ALA ALA THR TYR ASP GLU ILE LYS LYS SEQRES 21 R 334 ALA ILE LYS GLU GLU SER GLU GLY LYS LEU LYS GLY ILE SEQRES 22 R 334 LEU GLY TYR THR GLU ASP ASP VAL VAL SER THR ASP PHE SEQRES 23 R 334 VAL GLY ASP ASN ARG SER SER ILE PHE ASP ALA LYS ALA SEQRES 24 R 334 GLY ILE ALA LEU SER ASP LYS PHE VAL LYS LEU VAL SER SEQRES 25 R 334 TRP TYR ASP ASN GLU TRP GLY TYR SER SER ARG VAL VAL SEQRES 26 R 334 ASP LEU ILE VAL HIS MET SER LYS ALA MODRES 6QUN CSD O 149 CYS MODIFIED RESIDUE MODRES 6QUN CSD R 149 CYS MODIFIED RESIDUE HET CSD O 149 8 HET CSD R 149 8 HET NAD O 401 44 HET SO4 O 402 5 HET SO4 O 403 5 HET SO4 O 404 5 HET NAD R 401 44 HET SO4 R 402 5 HET SO4 R 403 5 HET SO4 R 404 5 HET SO4 R 405 5 HETNAM CSD 3-SULFINOALANINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 SO4 7(O4 S 2-) FORMUL 12 HOH *33(H2 O) HELIX 1 AA1 GLY O 9 ARG O 22 1 14 HELIX 2 AA2 THR O 36 TYR O 46 1 11 HELIX 3 AA3 ASP O 101 ALA O 106 1 6 HELIX 4 AA4 ALA O 106 GLY O 111 1 6 HELIX 5 AA5 ASN O 133 TYR O 137 5 5 HELIX 6 AA6 SER O 148 GLY O 166 1 19 HELIX 7 AA7 ASP O 192 ARG O 197 5 6 HELIX 8 AA8 ALA O 198 ASN O 202 5 5 HELIX 9 AA9 GLY O 209 LEU O 218 1 10 HELIX 10 AB1 PRO O 219 ASN O 222 5 4 HELIX 11 AB2 THR O 251 GLY O 265 1 15 HELIX 12 AB3 VAL O 279 VAL O 284 5 6 HELIX 13 AB4 GLU O 314 LYS O 330 1 17 HELIX 14 AB5 GLY R 9 ARG R 22 1 14 HELIX 15 AB6 THR R 36 TYR R 46 1 11 HELIX 16 AB7 ASP R 101 ALA R 106 1 6 HELIX 17 AB8 ALA R 106 GLY R 111 1 6 HELIX 18 AB9 ASN R 133 TYR R 137 5 5 HELIX 19 AC1 SER R 148 GLY R 166 1 19 HELIX 20 AC2 ASP R 192 ARG R 197 5 6 HELIX 21 AC3 ALA R 198 ASN R 202 5 5 HELIX 22 AC4 GLY R 209 LEU R 218 1 10 HELIX 23 AC5 PRO R 219 ASN R 222 5 4 HELIX 24 AC6 THR R 251 GLY R 265 1 15 HELIX 25 AC7 VAL R 279 VAL R 284 5 6 HELIX 26 AC8 GLU R 314 ALA R 331 1 18 SHEET 1 AA1 8 LEU O 56 LYS O 57 0 SHEET 2 AA1 8 THR O 63 LEU O 65 -1 O LEU O 65 N LEU O 56 SHEET 3 AA1 8 PRO O 70 PHE O 74 -1 O VAL O 71 N LEU O 64 SHEET 4 AA1 8 GLU O 26 ASN O 31 1 N VAL O 30 O PHE O 74 SHEET 5 AA1 8 ARG O 2 ASN O 6 1 N ILE O 5 O ASN O 31 SHEET 6 AA1 8 TYR O 91 GLU O 94 1 O TYR O 91 N GLY O 4 SHEET 7 AA1 8 LYS O 115 ILE O 118 1 O VAL O 117 N VAL O 92 SHEET 8 AA1 8 ILE O 143 SER O 145 1 O VAL O 144 N ILE O 118 SHEET 1 AA2 7 ILE O 204 SER O 206 0 SHEET 2 AA2 7 LEU O 225 ARG O 231 -1 O SER O 229 N SER O 206 SHEET 3 AA2 7 ILE O 167 HIS O 176 1 N HIS O 176 O PHE O 230 SHEET 4 AA2 7 SER O 238 LEU O 246 -1 O ASP O 241 N THR O 173 SHEET 5 AA2 7 PHE O 304 TYR O 311 -1 O LEU O 307 N LEU O 242 SHEET 6 AA2 7 SER O 290 ASP O 293 -1 N ASP O 293 O VAL O 308 SHEET 7 AA2 7 LEU O 271 THR O 274 1 N GLY O 272 O SER O 290 SHEET 1 AA3 6 ILE O 204 SER O 206 0 SHEET 2 AA3 6 LEU O 225 ARG O 231 -1 O SER O 229 N SER O 206 SHEET 3 AA3 6 ILE O 167 HIS O 176 1 N HIS O 176 O PHE O 230 SHEET 4 AA3 6 SER O 238 LEU O 246 -1 O ASP O 241 N THR O 173 SHEET 5 AA3 6 PHE O 304 TYR O 311 -1 O LEU O 307 N LEU O 242 SHEET 6 AA3 6 ILE O 298 ALA O 299 -1 N ILE O 298 O LYS O 306 SHEET 1 AA4 8 LEU R 56 LYS R 57 0 SHEET 2 AA4 8 THR R 63 PHE R 66 -1 O LEU R 65 N LEU R 56 SHEET 3 AA4 8 LYS R 69 PHE R 74 -1 O LYS R 69 N PHE R 66 SHEET 4 AA4 8 GLU R 26 ASN R 31 1 N VAL R 30 O PHE R 74 SHEET 5 AA4 8 ARG R 2 ASN R 6 1 N ILE R 5 O ASN R 31 SHEET 6 AA4 8 TYR R 91 GLU R 94 1 O TYR R 91 N ARG R 2 SHEET 7 AA4 8 LYS R 115 ILE R 118 1 O VAL R 117 N VAL R 92 SHEET 8 AA4 8 ILE R 143 SER R 145 1 O VAL R 144 N ILE R 118 SHEET 1 AA5 7 ILE R 204 SER R 206 0 SHEET 2 AA5 7 LEU R 225 ARG R 231 -1 O SER R 229 N SER R 206 SHEET 3 AA5 7 ILE R 167 HIS R 176 1 N HIS R 176 O PHE R 230 SHEET 4 AA5 7 SER R 238 LEU R 246 -1 O ASP R 241 N THR R 173 SHEET 5 AA5 7 PHE R 304 TYR R 311 -1 O VAL R 305 N VAL R 244 SHEET 6 AA5 7 SER R 290 ASP R 293 -1 N ASP R 293 O VAL R 308 SHEET 7 AA5 7 LEU R 271 THR R 274 1 N GLY R 272 O SER R 290 SHEET 1 AA6 6 ILE R 204 SER R 206 0 SHEET 2 AA6 6 LEU R 225 ARG R 231 -1 O SER R 229 N SER R 206 SHEET 3 AA6 6 ILE R 167 HIS R 176 1 N HIS R 176 O PHE R 230 SHEET 4 AA6 6 SER R 238 LEU R 246 -1 O ASP R 241 N THR R 173 SHEET 5 AA6 6 PHE R 304 TYR R 311 -1 O VAL R 305 N VAL R 244 SHEET 6 AA6 6 ILE R 298 ALA R 299 -1 N ILE R 298 O LYS R 306 LINK C SER O 148 N CSD O 149 1555 1555 1.33 LINK C CSD O 149 N THR O 150 1555 1555 1.33 LINK C SER R 148 N CSD R 149 1555 1555 1.33 LINK C CSD R 149 N THR R 150 1555 1555 1.33 SITE 1 AC1 20 ASN O 6 GLY O 7 PHE O 8 GLY O 9 SITE 2 AC1 20 ARG O 10 ILE O 11 ASN O 31 ASP O 32 SITE 3 AC1 20 PRO O 33 ARG O 77 SER O 95 THR O 96 SITE 4 AC1 20 GLY O 97 PHE O 99 SER O 119 ALA O 120 SITE 5 AC1 20 CSD O 149 ALA O 180 ASN O 313 SO4 O 402 SITE 1 AC2 4 THR O 179 THR O 181 ARG O 231 NAD O 401 SITE 1 AC3 5 SER O 148 THR O 150 THR O 208 GLY O 209 SITE 2 AC3 5 ALA O 210 SITE 1 AC4 4 SER O 200 SER R 200 PHE R 201 PRO R 233 SITE 1 AC5 22 ASN R 6 GLY R 7 PHE R 8 GLY R 9 SITE 2 AC5 22 ARG R 10 ILE R 11 ASN R 31 ASP R 32 SITE 3 AC5 22 PRO R 33 PHE R 34 ARG R 77 SER R 95 SITE 4 AC5 22 THR R 96 GLY R 97 PHE R 99 SER R 119 SITE 5 AC5 22 ALA R 120 CSD R 149 ALA R 180 ASN R 313 SITE 6 AC5 22 GLU R 314 SO4 R 402 SITE 1 AC6 4 THR R 179 THR R 181 ARG R 231 NAD R 401 SITE 1 AC7 4 SER R 148 THR R 150 THR R 208 ALA R 210 SITE 1 AC8 3 ASN R 287 TRP R 315 HOH R 501 SITE 1 AC9 2 LYS R 268 ARG R 288 CRYST1 77.677 77.677 407.346 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012874 0.007433 0.000000 0.00000 SCALE2 0.000000 0.014865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002455 0.00000