HEADER PLANT PROTEIN 28-FEB-19 6QUP TITLE STRUCTURAL SIGNATURES IN EPR3 DEFINE A UNIQUE CLASS OF PLANT TITLE 2 CARBOHYDRATE RECEPTORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSM TYPE RECEPTOR KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY 186 (NB186); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOTUS JAPONICUS; SOURCE 3 ORGANISM_TAXID: 34305; SOURCE 4 GENE: LYS3; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: LOBSTR KEYWDS LYSM PROTEIN, PLANT PROTEIN, NITROGEN FIXATION, PLANT RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.E.WONG,K.GYSEL,T.G.BIRKEFELDT,M.VINTHER,A.MUSZYNSKI,P.AZADI, AUTHOR 2 N.S.LAURSEN,J.T.SULLIVAN,C.W.RONSON,J.STOUGAARD,K.R.ANDERSEN REVDAT 4 13-NOV-24 6QUP 1 REMARK REVDAT 3 24-JAN-24 6QUP 1 REMARK REVDAT 2 19-AUG-20 6QUP 1 TITLE JRNL REVDAT 1 05-AUG-20 6QUP 0 JRNL AUTH J.E.M.M.WONG,K.GYSEL,T.G.BIRKEFELDT,M.VINTHER,A.MUSZYNSKI, JRNL AUTH 2 P.AZADI,N.S.LAURSEN,J.T.SULLIVAN,C.W.RONSON,J.STOUGAARD, JRNL AUTH 3 K.R.ANDERSEN JRNL TITL STRUCTURAL SIGNATURES IN EPR3 DEFINE A UNIQUE CLASS OF PLANT JRNL TITL 2 CARBOHYDRATE RECEPTORS. JRNL REF NAT COMMUN V. 11 3797 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32732998 JRNL DOI 10.1038/S41467-020-17568-9 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 25173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.4900 - 4.5093 0.98 1745 153 0.1544 0.1785 REMARK 3 2 4.5093 - 3.5791 0.99 1717 150 0.1317 0.1779 REMARK 3 3 3.5791 - 3.1267 0.98 1679 153 0.1413 0.1905 REMARK 3 4 3.1267 - 2.8408 0.99 1688 139 0.1648 0.2142 REMARK 3 5 2.8408 - 2.6372 0.99 1704 140 0.1713 0.2510 REMARK 3 6 2.6372 - 2.4817 0.99 1683 150 0.1644 0.2185 REMARK 3 7 2.4817 - 2.3574 0.99 1696 141 0.1746 0.2445 REMARK 3 8 2.3574 - 2.2548 0.98 1626 145 0.1742 0.2211 REMARK 3 9 2.2548 - 2.1680 0.99 1710 152 0.1849 0.2288 REMARK 3 10 2.1680 - 2.0932 0.99 1681 142 0.1971 0.2840 REMARK 3 11 2.0932 - 2.0277 0.98 1639 144 0.2031 0.2364 REMARK 3 12 2.0277 - 1.9697 0.99 1684 130 0.1997 0.2378 REMARK 3 13 1.9697 - 1.9179 0.93 1536 148 0.2430 0.2868 REMARK 3 14 1.9179 - 1.8711 0.82 1385 113 0.2857 0.3424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.5555 7.4051 24.4215 REMARK 3 T TENSOR REMARK 3 T11: 0.3073 T22: 0.2001 REMARK 3 T33: 0.2233 T12: 0.0055 REMARK 3 T13: 0.0096 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.2371 L22: 2.6034 REMARK 3 L33: 3.8091 L12: 0.1286 REMARK 3 L13: 1.0644 L23: 0.3375 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.2640 S13: 0.0660 REMARK 3 S21: 0.1941 S22: 0.0458 S23: 0.0775 REMARK 3 S31: 0.0222 S32: -0.1244 S33: 0.0200 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2730 -0.3775 24.1877 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.1917 REMARK 3 T33: 0.1777 T12: 0.0232 REMARK 3 T13: -0.0074 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 6.0707 L22: 1.1844 REMARK 3 L33: 2.7635 L12: -0.8299 REMARK 3 L13: -0.7380 L23: 0.3495 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.2294 S13: -0.0467 REMARK 3 S21: 0.0667 S22: 0.1155 S23: -0.0959 REMARK 3 S31: 0.0866 S32: 0.1512 S33: -0.0991 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5605 -9.7241 -0.6754 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.4068 REMARK 3 T33: 0.3517 T12: 0.0009 REMARK 3 T13: -0.0327 T23: -0.1326 REMARK 3 L TENSOR REMARK 3 L11: 4.2449 L22: 3.2202 REMARK 3 L33: 8.9187 L12: -3.0405 REMARK 3 L13: 5.8998 L23: -5.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.7941 S12: 0.8628 S13: -0.9998 REMARK 3 S21: -0.5264 S22: -0.0464 S23: 0.0593 REMARK 3 S31: 0.7652 S32: 0.6647 S33: -0.4960 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8771 2.4479 -4.4701 REMARK 3 T TENSOR REMARK 3 T11: 0.2830 T22: 0.2551 REMARK 3 T33: 0.1885 T12: -0.0288 REMARK 3 T13: -0.0182 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.0301 L22: 1.8823 REMARK 3 L33: 2.4215 L12: -1.3012 REMARK 3 L13: -0.2274 L23: 1.9629 REMARK 3 S TENSOR REMARK 3 S11: 0.2365 S12: 0.2868 S13: -0.3260 REMARK 3 S21: -0.4227 S22: -0.1309 S23: 0.5906 REMARK 3 S31: -0.0442 S32: -0.2278 S33: -0.0146 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4796 -3.7467 5.8496 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.1933 REMARK 3 T33: 0.2305 T12: -0.0149 REMARK 3 T13: -0.0145 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.4896 L22: 5.9728 REMARK 3 L33: 4.0981 L12: -0.8137 REMARK 3 L13: 0.9730 L23: -1.1671 REMARK 3 S TENSOR REMARK 3 S11: 0.2199 S12: 0.0534 S13: -0.5451 REMARK 3 S21: 0.2435 S22: -0.1154 S23: -0.1321 REMARK 3 S31: 0.4264 S32: -0.0009 S33: -0.0137 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9276 7.2157 2.6828 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.2698 REMARK 3 T33: 0.2176 T12: -0.0364 REMARK 3 T13: -0.0004 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 6.5654 L22: 5.2844 REMARK 3 L33: 9.6347 L12: 4.4587 REMARK 3 L13: -6.0646 L23: -6.9524 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.1429 S13: 0.1299 REMARK 3 S21: 0.1134 S22: -0.1599 S23: -0.3791 REMARK 3 S31: -0.3951 S32: 0.3326 S33: 0.1496 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9274 1.7228 13.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.2476 REMARK 3 T33: 0.1885 T12: 0.0062 REMARK 3 T13: 0.0195 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 5.6534 L22: 6.7175 REMARK 3 L33: 8.6642 L12: -1.1409 REMARK 3 L13: 0.6464 L23: -6.3224 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.2818 S13: 0.0369 REMARK 3 S21: 0.4299 S22: 0.2782 S23: 0.0164 REMARK 3 S31: -0.2825 S32: -0.4500 S33: -0.3623 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6080 1.2444 5.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.2729 REMARK 3 T33: 0.1900 T12: -0.0336 REMARK 3 T13: 0.0086 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 5.5120 L22: 1.4485 REMARK 3 L33: 4.5932 L12: 1.0600 REMARK 3 L13: 0.8321 L23: 1.6166 REMARK 3 S TENSOR REMARK 3 S11: 0.2239 S12: -0.2967 S13: -0.2536 REMARK 3 S21: 0.6312 S22: -0.2255 S23: -0.1656 REMARK 3 S31: 0.1424 S32: -0.2633 S33: 0.0128 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7967 6.5943 -0.6957 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 0.2090 REMARK 3 T33: 0.2118 T12: -0.0887 REMARK 3 T13: -0.0398 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.8591 L22: 5.5645 REMARK 3 L33: 6.6711 L12: -2.5644 REMARK 3 L13: 0.1830 L23: -3.7278 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: 0.3490 S13: 0.5154 REMARK 3 S21: -0.1559 S22: -0.4071 S23: -0.4388 REMARK 3 S31: -0.2103 S32: 0.1393 S33: 0.3419 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7755 0.4430 -0.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.2661 REMARK 3 T33: 0.2530 T12: -0.0336 REMARK 3 T13: 0.0186 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.3473 L22: 7.9911 REMARK 3 L33: 5.9875 L12: -5.5996 REMARK 3 L13: 4.5796 L23: -6.6726 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.4888 S13: 0.2152 REMARK 3 S21: -0.1880 S22: -0.2302 S23: -0.1713 REMARK 3 S31: -0.0074 S32: 0.3819 S33: 0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 72.491 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.5, 20% PEG REMARK 280 4000, 18% 2-PROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.04150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 218 REMARK 465 ILE A 219 REMARK 465 SER A 220 REMARK 465 HIS A 221 REMARK 465 GLY A 222 REMARK 465 LYS A 223 REMARK 465 GLU A 224 REMARK 465 ASN A 225 REMARK 465 LYS A 226 REMARK 465 HIS A 227 REMARK 465 LYS A 228 REMARK 465 LEU A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 ILE A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 GLU B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 140 O HOH A 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 -167.55 -104.09 REMARK 500 ASN A 102 53.96 -143.68 REMARK 500 ASN A 104 76.49 41.18 REMARK 500 ASN A 173 -8.63 79.41 REMARK 500 ALA B 92 168.80 174.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 6QUP A 33 232 UNP D3KU53 D3KU53_LOTJA 33 232 DBREF 6QUP B 1 126 PDB 6QUP 6QUP 1 126 SEQADV 6QUP HIS A 233 UNP D3KU53 EXPRESSION TAG SEQADV 6QUP HIS A 234 UNP D3KU53 EXPRESSION TAG SEQADV 6QUP HIS A 235 UNP D3KU53 EXPRESSION TAG SEQADV 6QUP HIS A 236 UNP D3KU53 EXPRESSION TAG SEQADV 6QUP HIS A 237 UNP D3KU53 EXPRESSION TAG SEQADV 6QUP HIS A 238 UNP D3KU53 EXPRESSION TAG SEQRES 1 A 206 LEU GLU VAL SER SER LYS THR THR TYR MET GLU PRO PHE SEQRES 2 A 206 ASN CYS SER THR LYS ILE ARG THR CYS ASN SER LEU LEU SEQRES 3 A 206 TYR HIS ILE SER ILE GLY LEU LYS VAL GLU GLU ILE ALA SEQRES 4 A 206 ARG PHE TYR SER VAL ASN LEU SER ARG ILE LYS PRO ILE SEQRES 5 A 206 THR ARG GLY THR LYS GLN ASP TYR LEU VAL SER VAL PRO SEQRES 6 A 206 CYS THR CYS ARG ASN THR ASN GLY LEU ASN GLY TYR PHE SEQRES 7 A 206 TYR HIS THR SER TYR LYS VAL LYS VAL ASN ASP SER PHE SEQRES 8 A 206 VAL ASP ILE GLN ASN LEU PHE TYR SER GLY GLN ALA TRP SEQRES 9 A 206 PRO VAL ASN GLU ASP LEU VAL VAL PRO ASN GLU THR MET SEQRES 10 A 206 THR ILE HIS ILE PRO CYS GLY CYS SER GLU SER GLY SER SEQRES 11 A 206 GLN ILE VAL VAL THR TYR THR VAL GLN ARG ASN ASP THR SEQRES 12 A 206 PRO LEU SER ILE ALA LEU LEU LEU ASN ALA THR VAL GLU SEQRES 13 A 206 GLY MET VAL SER VAL ASN SER VAL MET ALA PRO ASN PRO SEQRES 14 A 206 THR PHE ILE ASP VAL GLY TRP VAL LEU TYR VAL PRO LYS SEQRES 15 A 206 GLU LEU ASN PRO ILE SER HIS GLY LYS GLU ASN LYS HIS SEQRES 16 A 206 LYS LEU GLU LYS ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 126 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 B 126 GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 B 126 GLY SER ILE PHE SER ILE ASP TYR MET GLY TRP TYR ARG SEQRES 4 B 126 GLN ALA PRO GLY LYS GLU ARG GLU LEU VAL ALA ILE LYS SEQRES 5 B 126 THR SER GLY GLY THR THR HIS TYR ALA ASP SER VAL LYS SEQRES 6 B 126 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO ASP ASP THR SEQRES 8 B 126 ALA VAL TYR TYR CYS ASN ALA ARG VAL TYR PHE GLY ASP SEQRES 9 B 126 ARG ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 B 126 SER LEU GLU HIS HIS HIS HIS HIS HIS HET NAG A 301 27 HET IPA A 302 12 HET EDO A 303 10 HET EDO A 304 10 HET IPA B 201 12 HET IPA B 202 12 HET EDO B 203 10 HET EDO B 204 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM IPA ISOPROPYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN IPA 2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG C8 H15 N O6 FORMUL 4 IPA 3(C3 H8 O) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 11 HOH *169(H2 O) HELIX 1 AA1 LYS A 66 SER A 75 1 10 HELIX 2 AA2 ASN A 77 SER A 79 5 3 HELIX 3 AA3 SER A 122 PHE A 130 1 9 HELIX 4 AA4 ASN A 139 VAL A 143 5 5 HELIX 5 AA5 THR A 175 LEU A 183 1 9 HELIX 6 AA6 THR A 186 ASN A 194 1 9 HELIX 7 AA7 SER A 195 ALA A 198 5 4 HELIX 8 AA8 ILE B 29 ILE B 32 5 4 HELIX 9 AA9 ASN B 74 LYS B 76 5 3 HELIX 10 AB1 LYS B 87 THR B 91 5 5 SHEET 1 AA1 4 ILE A 81 ARG A 86 0 SHEET 2 AA1 4 LYS A 89 THR A 103 -1 O LEU A 93 N LYS A 82 SHEET 3 AA1 4 LEU A 106 LYS A 116 -1 O PHE A 110 N THR A 99 SHEET 4 AA1 4 THR A 148 PRO A 154 -1 O ILE A 153 N TYR A 111 SHEET 1 AA2 5 ILE A 81 ARG A 86 0 SHEET 2 AA2 5 LYS A 89 THR A 103 -1 O LEU A 93 N LYS A 82 SHEET 3 AA2 5 THR A 53 HIS A 60 -1 N HIS A 60 O TYR A 92 SHEET 4 AA2 5 GLN A 163 THR A 169 1 O THR A 167 N LEU A 57 SHEET 5 AA2 5 VAL A 209 GLU A 215 -1 O LEU A 210 N TYR A 168 SHEET 1 AA3 4 VAL B 3 SER B 8 0 SHEET 2 AA3 4 LEU B 19 GLY B 27 -1 O SER B 26 N GLN B 4 SHEET 3 AA3 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 19 SHEET 4 AA3 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA4 6 GLY B 11 VAL B 13 0 SHEET 2 AA4 6 THR B 112 VAL B 116 1 O THR B 115 N VAL B 13 SHEET 3 AA4 6 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 112 SHEET 4 AA4 6 TYR B 34 GLN B 40 -1 N TYR B 38 O TYR B 95 SHEET 5 AA4 6 GLU B 47 THR B 53 -1 O ALA B 50 N TRP B 37 SHEET 6 AA4 6 THR B 58 TYR B 60 -1 O HIS B 59 N ILE B 51 SHEET 1 AA5 4 GLY B 11 VAL B 13 0 SHEET 2 AA5 4 THR B 112 VAL B 116 1 O THR B 115 N VAL B 13 SHEET 3 AA5 4 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 112 SHEET 4 AA5 4 TYR B 107 TRP B 108 -1 O TYR B 107 N ALA B 98 SSBOND 1 CYS A 47 CYS A 100 1555 1555 2.08 SSBOND 2 CYS A 54 CYS A 157 1555 1555 2.07 SSBOND 3 CYS A 98 CYS A 155 1555 1555 2.01 LINK ND2 ASN A 184 C1 NAG A 301 1555 1555 1.46 CRYST1 59.822 36.083 72.661 90.00 93.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016716 0.000000 0.001145 0.00000 SCALE2 0.000000 0.027714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013795 0.00000