HEADER DNA BINDING PROTEIN 01-MAR-19 6QVF TITLE TT_C0855 COMPETENCE PILIN FROM THERMUS THERMOPHILUS HB27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPILIN-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEQUENCE GSGSWSHPQFEK CORRESPONDS TO INSERTED LINKER COMPND 6 AND STREP TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: PILA2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE IV PILIN; NATURAL COMPETENCE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.DERRICK,M.Z.SALLEH,C.LEVY REVDAT 3 21-AUG-19 6QVF 1 REMARK REVDAT 2 26-JUN-19 6QVF 1 JRNL REVDAT 1 29-MAY-19 6QVF 0 JRNL AUTH M.Z.SALLEH,V.KARUPPIAH,M.SNEE,A.THISTLETHWAITE,C.W.LEVY, JRNL AUTH 2 D.KNIGHT,J.P.DERRICK JRNL TITL STRUCTURE AND PROPERTIES OF A NATURAL COMPETENCE-ASSOCIATED JRNL TITL 2 PILIN SUGGEST A UNIQUE PILUS TIP-ASSOCIATED DNA RECEPTOR. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31186316 JRNL DOI 10.1128/MBIO.00614-19 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 128589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1006 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5342 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4627 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7323 ; 1.435 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10929 ; 1.052 ; 1.625 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 683 ; 5.559 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;36.157 ;19.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 736 ;13.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;14.669 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6142 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 954 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9969 ; 4.723 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 609 ;18.564 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10198 ;11.423 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 32 A 201 1 REMARK 3 1 B 32 B 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 1277 ; 4.060 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 33 A 201 1 REMARK 3 1 C 33 C 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 A (A**2): 1266 ; 3.940 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 32 A 201 1 REMARK 3 1 D 32 D 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 A (A**2): 1277 ; 5.200 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 33 B 201 1 REMARK 3 1 C 33 C 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 4 B (A**2): 1266 ; 4.670 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 31 B 201 1 REMARK 3 1 D 31 D 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 5 B (A**2): 1285 ; 4.250 ; 0.870 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 33 C 201 1 REMARK 3 1 D 33 D 201 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 6 C (A**2): 1266 ; 4.500 ; 0.870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6QVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM NITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 8.5, AND 18% V/V PEG SMEAR HIGH, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.90750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 30 REMARK 465 LEU A 31 REMARK 465 GLU A 203 REMARK 465 LYS A 204 REMARK 465 GLU B 203 REMARK 465 LYS B 204 REMARK 465 ASN C 30 REMARK 465 LEU C 31 REMARK 465 ARG C 32 REMARK 465 GLU C 203 REMARK 465 LYS C 204 REMARK 465 ASN D 30 REMARK 465 LYS D 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 453 O HOH C 494 1.68 REMARK 500 O HOH A 583 O HOH A 590 1.86 REMARK 500 O HOH A 453 O HOH A 476 1.87 REMARK 500 O HOH B 424 O HOH B 462 1.96 REMARK 500 N ALA C 33 O HOH C 301 2.04 REMARK 500 O HOH A 481 O HOH A 487 2.05 REMARK 500 O HOH B 463 O HOH B 480 2.05 REMARK 500 O HOH B 393 O HOH B 462 2.05 REMARK 500 O HOH B 327 O HOH B 476 2.10 REMARK 500 O HOH B 424 O HOH B 447 2.14 REMARK 500 O HOH A 339 O HOH A 529 2.17 REMARK 500 O HOH D 309 O HOH D 394 2.18 REMARK 500 O HOH B 531 O HOH B 534 2.18 REMARK 500 OG SER A 81 O HOH A 301 2.19 REMARK 500 OD2 ASP A 78 O HOH A 302 2.19 REMARK 500 O HOH A 484 O HOH A 487 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 38 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 180 75.43 -152.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 587 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 588 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 590 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH B 537 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 539 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH C 558 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH C 559 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH C 560 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH D 513 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH D 514 DISTANCE = 5.88 ANGSTROMS DBREF 6QVF A 30 192 UNP Q8KPZ3 Q8KPZ3_THETH 31 193 DBREF 6QVF B 30 192 UNP Q8KPZ3 Q8KPZ3_THETH 31 193 DBREF 6QVF C 30 192 UNP Q8KPZ3 Q8KPZ3_THETH 31 193 DBREF 6QVF D 30 192 UNP Q8KPZ3 Q8KPZ3_THETH 31 193 SEQADV 6QVF GLY A 193 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER A 194 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY A 195 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER A 196 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF TRP A 197 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER A 198 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF HIS A 199 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PRO A 200 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLN A 201 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PHE A 202 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLU A 203 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF LYS A 204 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY B 193 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER B 194 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY B 195 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER B 196 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF TRP B 197 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER B 198 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF HIS B 199 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PRO B 200 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLN B 201 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PHE B 202 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLU B 203 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF LYS B 204 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY C 193 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER C 194 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY C 195 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER C 196 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF TRP C 197 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER C 198 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF HIS C 199 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PRO C 200 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLN C 201 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PHE C 202 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLU C 203 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF LYS C 204 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY D 193 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER D 194 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLY D 195 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER D 196 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF TRP D 197 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF SER D 198 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF HIS D 199 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PRO D 200 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLN D 201 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF PHE D 202 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF GLU D 203 UNP Q8KPZ3 EXPRESSION TAG SEQADV 6QVF LYS D 204 UNP Q8KPZ3 EXPRESSION TAG SEQRES 1 A 175 ASN LEU ARG ALA SER ALA GLN ALA ARG PHE ALA THR ASP SEQRES 2 A 175 ALA LYS ALA ALA ALA VAL GLN VAL LEU GLU ARG ARG SER SEQRES 3 A 175 ALA GLU VAL LEU LYS SER GLU ILE VAL PRO ALA LEU SER SEQRES 4 A 175 PRO TYR LYS ASP ALA PRO LEU ASP PRO ASP ASN PRO SER SEQRES 5 A 175 GLY ASN TRP ARG SER PHE TYR PHE VAL ASP TYR TYR PHE SEQRES 6 A 175 SER CYS PRO THR ARG VAL ALA PRO SER PRO LYS GLN ARG SEQRES 7 A 175 GLY GLY SER VAL ALA ASN LEU ARG PRO GLY LEU THR CYS SEQRES 8 A 175 SER GLY THR GLU THR ILE PHE GLY ILE PRO VAL ALA TRP SEQRES 9 A 175 ASP ILE ARG GLY GLU ASN GLY ILE LEU GLY GLU GLY VAL SEQRES 10 A 175 VAL THR VAL VAL VAL THR ALA THR HIS PRO ARG GLY PRO SEQRES 11 A 175 LYS VAL THR LEU GLY ARG ARG VAL THR CYS TYR ASP VAL SEQRES 12 A 175 TYR PRO SER PRO THR GLN ASP GLN PRO ALA PRO CYS PRO SEQRES 13 A 175 PRO PRO GLY GLY GLY ARG PRO GLY SER GLY SER TRP SER SEQRES 14 A 175 HIS PRO GLN PHE GLU LYS SEQRES 1 B 175 ASN LEU ARG ALA SER ALA GLN ALA ARG PHE ALA THR ASP SEQRES 2 B 175 ALA LYS ALA ALA ALA VAL GLN VAL LEU GLU ARG ARG SER SEQRES 3 B 175 ALA GLU VAL LEU LYS SER GLU ILE VAL PRO ALA LEU SER SEQRES 4 B 175 PRO TYR LYS ASP ALA PRO LEU ASP PRO ASP ASN PRO SER SEQRES 5 B 175 GLY ASN TRP ARG SER PHE TYR PHE VAL ASP TYR TYR PHE SEQRES 6 B 175 SER CYS PRO THR ARG VAL ALA PRO SER PRO LYS GLN ARG SEQRES 7 B 175 GLY GLY SER VAL ALA ASN LEU ARG PRO GLY LEU THR CYS SEQRES 8 B 175 SER GLY THR GLU THR ILE PHE GLY ILE PRO VAL ALA TRP SEQRES 9 B 175 ASP ILE ARG GLY GLU ASN GLY ILE LEU GLY GLU GLY VAL SEQRES 10 B 175 VAL THR VAL VAL VAL THR ALA THR HIS PRO ARG GLY PRO SEQRES 11 B 175 LYS VAL THR LEU GLY ARG ARG VAL THR CYS TYR ASP VAL SEQRES 12 B 175 TYR PRO SER PRO THR GLN ASP GLN PRO ALA PRO CYS PRO SEQRES 13 B 175 PRO PRO GLY GLY GLY ARG PRO GLY SER GLY SER TRP SER SEQRES 14 B 175 HIS PRO GLN PHE GLU LYS SEQRES 1 C 175 ASN LEU ARG ALA SER ALA GLN ALA ARG PHE ALA THR ASP SEQRES 2 C 175 ALA LYS ALA ALA ALA VAL GLN VAL LEU GLU ARG ARG SER SEQRES 3 C 175 ALA GLU VAL LEU LYS SER GLU ILE VAL PRO ALA LEU SER SEQRES 4 C 175 PRO TYR LYS ASP ALA PRO LEU ASP PRO ASP ASN PRO SER SEQRES 5 C 175 GLY ASN TRP ARG SER PHE TYR PHE VAL ASP TYR TYR PHE SEQRES 6 C 175 SER CYS PRO THR ARG VAL ALA PRO SER PRO LYS GLN ARG SEQRES 7 C 175 GLY GLY SER VAL ALA ASN LEU ARG PRO GLY LEU THR CYS SEQRES 8 C 175 SER GLY THR GLU THR ILE PHE GLY ILE PRO VAL ALA TRP SEQRES 9 C 175 ASP ILE ARG GLY GLU ASN GLY ILE LEU GLY GLU GLY VAL SEQRES 10 C 175 VAL THR VAL VAL VAL THR ALA THR HIS PRO ARG GLY PRO SEQRES 11 C 175 LYS VAL THR LEU GLY ARG ARG VAL THR CYS TYR ASP VAL SEQRES 12 C 175 TYR PRO SER PRO THR GLN ASP GLN PRO ALA PRO CYS PRO SEQRES 13 C 175 PRO PRO GLY GLY GLY ARG PRO GLY SER GLY SER TRP SER SEQRES 14 C 175 HIS PRO GLN PHE GLU LYS SEQRES 1 D 175 ASN LEU ARG ALA SER ALA GLN ALA ARG PHE ALA THR ASP SEQRES 2 D 175 ALA LYS ALA ALA ALA VAL GLN VAL LEU GLU ARG ARG SER SEQRES 3 D 175 ALA GLU VAL LEU LYS SER GLU ILE VAL PRO ALA LEU SER SEQRES 4 D 175 PRO TYR LYS ASP ALA PRO LEU ASP PRO ASP ASN PRO SER SEQRES 5 D 175 GLY ASN TRP ARG SER PHE TYR PHE VAL ASP TYR TYR PHE SEQRES 6 D 175 SER CYS PRO THR ARG VAL ALA PRO SER PRO LYS GLN ARG SEQRES 7 D 175 GLY GLY SER VAL ALA ASN LEU ARG PRO GLY LEU THR CYS SEQRES 8 D 175 SER GLY THR GLU THR ILE PHE GLY ILE PRO VAL ALA TRP SEQRES 9 D 175 ASP ILE ARG GLY GLU ASN GLY ILE LEU GLY GLU GLY VAL SEQRES 10 D 175 VAL THR VAL VAL VAL THR ALA THR HIS PRO ARG GLY PRO SEQRES 11 D 175 LYS VAL THR LEU GLY ARG ARG VAL THR CYS TYR ASP VAL SEQRES 12 D 175 TYR PRO SER PRO THR GLN ASP GLN PRO ALA PRO CYS PRO SEQRES 13 D 175 PRO PRO GLY GLY GLY ARG PRO GLY SER GLY SER TRP SER SEQRES 14 D 175 HIS PRO GLN PHE GLU LYS FORMUL 5 HOH *1006(H2 O) HELIX 1 AA1 ARG A 32 LYS A 60 1 29 HELIX 2 AA2 TYR A 88 CYS A 96 1 9 HELIX 3 AA3 GLN A 106 LEU A 114 5 9 HELIX 4 AA4 ASN A 139 GLU A 144 1 6 HELIX 5 AA5 TYR A 170 VAL A 172 5 3 HELIX 6 AA6 LEU B 31 LYS B 60 1 30 HELIX 7 AA7 TYR B 88 CYS B 96 1 9 HELIX 8 AA8 GLN B 106 LEU B 114 5 9 HELIX 9 AA9 ASN B 139 GLU B 144 1 6 HELIX 10 AB1 TYR B 170 VAL B 172 5 3 HELIX 11 AB2 SER C 34 LYS C 60 1 27 HELIX 12 AB3 TYR C 88 CYS C 96 1 9 HELIX 13 AB4 GLN C 106 LEU C 114 5 9 HELIX 14 AB5 ASN C 139 GLU C 144 1 6 HELIX 15 AB6 TYR C 170 VAL C 172 5 3 HELIX 16 AB7 ARG D 32 LYS D 60 1 29 HELIX 17 AB8 TYR D 88 CYS D 96 1 9 HELIX 18 AB9 GLN D 106 LEU D 114 5 9 HELIX 19 AC1 ASN D 139 GLU D 144 1 6 HELIX 20 AC2 TYR D 170 VAL D 172 5 3 HELIX 21 AC3 HIS D 199 GLU D 203 5 5 SHEET 1 AA1 3 SER A 61 VAL A 64 0 SHEET 2 AA1 3 TRP A 84 PHE A 87 -1 O TRP A 84 N VAL A 64 SHEET 3 AA1 3 ALA A 73 PRO A 74 -1 N ALA A 73 O ARG A 85 SHEET 1 AA2 8 SER A 121 ILE A 126 0 SHEET 2 AA2 8 ILE A 129 GLY A 137 -1 O VAL A 131 N GLU A 124 SHEET 3 AA2 8 VAL A 146 THR A 154 -1 O THR A 148 N ARG A 136 SHEET 4 AA2 8 LYS A 160 THR A 168 -1 O VAL A 167 N VAL A 147 SHEET 5 AA2 8 LYS B 160 THR B 168 -1 O GLY B 164 N GLY A 164 SHEET 6 AA2 8 VAL B 146 THR B 154 -1 N VAL B 147 O VAL B 167 SHEET 7 AA2 8 ILE B 129 GLY B 137 -1 N ALA B 132 O THR B 152 SHEET 8 AA2 8 SER B 121 ILE B 126 -1 N GLU B 124 O VAL B 131 SHEET 1 AA3 2 SER A 196 SER A 198 0 SHEET 2 AA3 2 SER B 196 SER B 198 -1 O SER B 198 N SER A 196 SHEET 1 AA4 3 SER B 61 VAL B 64 0 SHEET 2 AA4 3 TRP B 84 PHE B 87 -1 O TRP B 84 N VAL B 64 SHEET 3 AA4 3 ALA B 73 PRO B 74 -1 N ALA B 73 O ARG B 85 SHEET 1 AA5 3 SER C 61 VAL C 64 0 SHEET 2 AA5 3 TRP C 84 PHE C 87 -1 O TRP C 84 N VAL C 64 SHEET 3 AA5 3 ALA C 73 PRO C 74 -1 N ALA C 73 O ARG C 85 SHEET 1 AA6 8 SER C 121 ILE C 126 0 SHEET 2 AA6 8 ILE C 129 GLY C 137 -1 O VAL C 131 N GLU C 124 SHEET 3 AA6 8 VAL C 146 THR C 154 -1 O THR C 148 N ARG C 136 SHEET 4 AA6 8 LYS C 160 THR C 168 -1 O VAL C 167 N VAL C 147 SHEET 5 AA6 8 LYS D 160 THR D 168 -1 O GLY D 164 N GLY C 164 SHEET 6 AA6 8 VAL D 146 THR D 154 -1 N VAL D 147 O VAL D 167 SHEET 7 AA6 8 ILE D 129 GLY D 137 -1 N ARG D 136 O THR D 148 SHEET 8 AA6 8 SER D 121 ILE D 126 -1 N GLU D 124 O VAL D 131 SHEET 1 AA7 2 SER C 196 SER C 198 0 SHEET 2 AA7 2 SER D 196 SER D 198 -1 O SER D 198 N SER C 196 SHEET 1 AA8 3 SER D 61 VAL D 64 0 SHEET 2 AA8 3 TRP D 84 PHE D 87 -1 O TRP D 84 N VAL D 64 SHEET 3 AA8 3 ALA D 73 PRO D 74 -1 N ALA D 73 O ARG D 85 SSBOND 1 CYS A 96 CYS A 120 1555 1555 2.08 SSBOND 2 CYS A 169 CYS A 184 1555 1555 2.10 SSBOND 3 CYS B 96 CYS B 120 1555 1555 2.05 SSBOND 4 CYS B 169 CYS B 184 1555 1555 2.12 SSBOND 5 CYS C 96 CYS C 120 1555 1555 2.04 SSBOND 6 CYS C 169 CYS C 184 1555 1555 2.16 SSBOND 7 CYS D 96 CYS D 120 1555 1555 2.07 SSBOND 8 CYS D 169 CYS D 184 1555 1555 2.09 CISPEP 1 CYS A 96 PRO A 97 0 3.79 CISPEP 2 TYR A 173 PRO A 174 0 -7.64 CISPEP 3 ALA A 182 PRO A 183 0 6.67 CISPEP 4 CYS B 96 PRO B 97 0 2.23 CISPEP 5 TYR B 173 PRO B 174 0 -8.90 CISPEP 6 ALA B 182 PRO B 183 0 8.08 CISPEP 7 CYS C 96 PRO C 97 0 6.57 CISPEP 8 TYR C 173 PRO C 174 0 -5.67 CISPEP 9 ALA C 182 PRO C 183 0 1.51 CISPEP 10 CYS D 96 PRO D 97 0 6.51 CISPEP 11 TYR D 173 PRO D 174 0 -6.81 CISPEP 12 ALA D 182 PRO D 183 0 4.74 CRYST1 50.588 137.815 59.739 90.00 98.18 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019768 0.000000 0.002842 0.00000 SCALE2 0.000000 0.007256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016912 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.999997 -0.001931 -0.001437 56.60302 1 MTRIX2 2 -0.002308 0.938348 0.345685 -6.03092 1 MTRIX3 2 0.000681 0.345687 -0.938350 34.22530 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 0.999985 0.001065 0.005340 -0.18892 1 MTRIX2 4 0.001039 -0.999987 0.004980 133.43457 1 MTRIX3 4 0.005345 -0.004975 -0.999973 59.42985 1 MTRIX1 5 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 5 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 5 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 6 -0.999964 -0.001026 0.008448 56.25571 1 MTRIX2 6 -0.001944 -0.938914 -0.344145 139.70108 1 MTRIX3 6 0.008285 -0.344149 0.938878 24.53516 1 MTRIX1 7 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 7 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 7 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 8 -0.999986 0.001042 -0.005157 56.46065 1 MTRIX2 8 0.000775 -0.940340 -0.340235 139.67716 1 MTRIX3 8 -0.005203 -0.340234 0.940326 24.55111 1 MTRIX1 9 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 9 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 9 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 10 0.999976 0.003315 -0.006066 -0.04418 1 MTRIX2 10 0.003329 -0.999992 0.002173 133.37117 1 MTRIX3 10 -0.006059 -0.002194 -0.999979 59.47612 1 MTRIX1 11 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 11 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 11 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 12 -0.999913 -0.003639 0.012674 56.26137 1 MTRIX2 12 0.000873 0.940782 0.339011 -6.03466 1 MTRIX3 12 -0.013157 0.338992 -0.940697 35.23877 1