HEADER TRANSCRIPTION 05-MAR-19 6QVW TITLE SOLUTION STRUCTURE OF THE FREE FOXO1 DNA BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORKHEAD BOX PROTEIN O1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FORKHEAD BOX PROTEIN O1A,FORKHEAD IN RHABDOMYOSARCOMA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FOXO1, FKHR, FOXO1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG KEYWDS FOXO1, TRASNCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR K.PSENAKOVA,T.OBSIL,V.VEVERKA,V.OBSILOVA,K.KOHOUTOVA REVDAT 3 14-JUN-23 6QVW 1 JRNL REVDAT 2 11-SEP-19 6QVW 1 JRNL REVDAT 1 04-SEP-19 6QVW 0 JRNL AUTH K.PSENAKOVA,K.KOHOUTOVA,V.OBSILOVA,M.J.AUSSERLECHNER, JRNL AUTH 2 V.VEVERKA,T.OBSIL JRNL TITL FORKHEAD DOMAINS OF FOXO TRANSCRIPTION FACTORS DIFFER IN JRNL TITL 2 BOTH OVERALL CONFORMATION AND DYNAMICS. JRNL REF CELLS V. 8 2019 JRNL REFN ESSN 2073-4409 JRNL PMID 31450545 JRNL DOI 10.3390/CELLS8090966 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA REMARK 3 AUTHORS : YASARA REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101018. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 380 UM [U-13C; U-15N] FOXO1 DBD, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 2 MM TCEP, REMARK 210 100 % N/A N/A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCACO; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D N-EDITED NOESY; REMARK 210 3D C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 153 124.66 70.33 REMARK 500 1 ALA A 156 -173.06 62.07 REMARK 500 1 HIS A 217 8.46 54.91 REMARK 500 1 ALA A 252 169.62 67.46 REMARK 500 1 LYS A 259 -37.75 -149.37 REMARK 500 2 LEU A 153 160.56 72.20 REMARK 500 2 ALA A 156 -155.89 56.66 REMARK 500 2 ASN A 159 105.51 -167.02 REMARK 500 2 ALA A 261 19.13 -142.96 REMARK 500 3 HIS A 217 16.26 42.36 REMARK 500 3 THR A 228 16.67 47.42 REMARK 500 3 LYS A 230 -54.60 -130.43 REMARK 500 3 ALA A 252 57.07 -146.89 REMARK 500 4 ASN A 159 79.60 -104.87 REMARK 500 4 THR A 228 28.38 -78.01 REMARK 500 4 SER A 258 162.89 66.34 REMARK 500 5 SER A 155 40.87 -102.85 REMARK 500 5 ASN A 159 75.45 55.89 REMARK 500 5 HIS A 217 8.56 53.79 REMARK 500 5 THR A 228 37.23 34.47 REMARK 500 5 SER A 243 -176.93 60.74 REMARK 500 5 MET A 254 46.78 -159.70 REMARK 500 6 LEU A 153 118.18 68.88 REMARK 500 6 ALA A 156 -154.13 -135.35 REMARK 500 6 ASN A 159 73.95 52.18 REMARK 500 6 HIS A 217 3.09 42.97 REMARK 500 6 LYS A 230 -48.12 -144.46 REMARK 500 6 LYS A 245 47.67 -80.34 REMARK 500 6 MET A 254 -169.78 -160.50 REMARK 500 6 LYS A 262 -147.77 46.33 REMARK 500 7 ASN A 159 107.49 -161.34 REMARK 500 7 SER A 218 -3.21 -59.26 REMARK 500 7 SER A 232 167.01 64.30 REMARK 500 7 ARG A 250 37.97 -150.72 REMARK 500 7 MET A 254 84.88 60.54 REMARK 500 8 LEU A 153 167.38 69.15 REMARK 500 8 SER A 218 -4.48 -59.03 REMARK 500 8 SER A 243 -145.80 64.04 REMARK 500 8 MET A 254 43.71 -141.03 REMARK 500 8 PHE A 260 159.33 60.86 REMARK 500 8 SER A 263 -47.76 -146.99 REMARK 500 8 ARG A 264 -93.80 62.43 REMARK 500 9 SER A 155 -173.22 61.91 REMARK 500 9 HIS A 217 21.90 40.22 REMARK 500 9 LYS A 245 47.57 -77.21 REMARK 500 9 ALA A 251 42.09 -150.16 REMARK 500 9 MET A 254 87.86 -155.49 REMARK 500 9 PHE A 260 155.29 65.02 REMARK 500 10 ALA A 156 -116.39 49.24 REMARK 500 10 ASN A 159 46.11 -87.37 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34364 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE FREE FOXO1 DNA BINDING DOMAIN DBREF 6QVW A 156 269 UNP Q12778 FOXO1_HUMAN 159 272 SEQADV 6QVW GLY A 151 UNP Q12778 EXPRESSION TAG SEQADV 6QVW PRO A 152 UNP Q12778 EXPRESSION TAG SEQADV 6QVW LEU A 153 UNP Q12778 EXPRESSION TAG SEQADV 6QVW GLY A 154 UNP Q12778 EXPRESSION TAG SEQADV 6QVW SER A 155 UNP Q12778 EXPRESSION TAG SEQADV 6QVW GLY A 265 UNP Q12778 SER 268 CONFLICT SEQRES 1 A 119 GLY PRO LEU GLY SER ALA TRP GLY ASN LEU SER TYR ALA SEQRES 2 A 119 ASP LEU ILE THR LYS ALA ILE GLU SER SER ALA GLU LYS SEQRES 3 A 119 ARG LEU THR LEU SER GLN ILE TYR GLU TRP MET VAL LYS SEQRES 4 A 119 SER VAL PRO TYR PHE LYS ASP LYS GLY ASP SER ASN SER SEQRES 5 A 119 SER ALA GLY TRP LYS ASN SER ILE ARG HIS ASN LEU SER SEQRES 6 A 119 LEU HIS SER LYS PHE ILE ARG VAL GLN ASN GLU GLY THR SEQRES 7 A 119 GLY LYS SER SER TRP TRP MET LEU ASN PRO GLU GLY GLY SEQRES 8 A 119 LYS SER GLY LYS SER PRO ARG ARG ARG ALA ALA SER MET SEQRES 9 A 119 ASP ASN ASN SER LYS PHE ALA LYS SER ARG GLY ARG ALA SEQRES 10 A 119 ALA LYS HELIX 1 AA1 SER A 161 SER A 173 1 13 HELIX 2 AA2 LEU A 180 VAL A 191 1 12 HELIX 3 AA3 VAL A 191 LYS A 197 1 7 HELIX 4 AA4 SER A 202 LEU A 216 1 15 SHEET 1 AA1 3 ARG A 177 THR A 179 0 SHEET 2 AA1 3 TRP A 233 LEU A 236 -1 O TRP A 234 N LEU A 178 SHEET 3 AA1 3 PHE A 220 VAL A 223 -1 N ILE A 221 O MET A 235 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1