HEADER HYDROLASE 05-MAR-19 6QW5 TITLE STRUCTURE AND FUNCTION OF THE TOSCANA VIRUS CAP SNATCHING ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAP-SNATCHING ENDONUCLEASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: 2,4-DIOXO-4-PHENYLBUTANOIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOSCANA VIRUS; SOURCE 3 ORGANISM_COMMON: TOS; SOURCE 4 ORGANISM_TAXID: 11590; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CAP SNATCHING ENDONUCLEASE OF TOSCANA VIRUS AT THE N-TERM OF THE L KEYWDS 2 PROTEIN., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.REGUERA,R.JONES,G.BRAGAGNIOLO,S.LESSOUED,M.MATE REVDAT 3 20-NOV-19 6QW5 1 JRNL REVDAT 2 16-OCT-19 6QW5 1 JRNL REVDAT 1 25-SEP-19 6QW5 0 JRNL AUTH R.JONES,S.LESSOUED,K.MEIER,S.DEVIGNOT,S.BARATA-GARCIA, JRNL AUTH 2 M.MATE,G.BRAGAGNOLO,F.WEBER,M.ROSENTHAL,J.REGUERA JRNL TITL STRUCTURE AND FUNCTION OF THE TOSCANA VIRUS CAP-SNATCHING JRNL TITL 2 ENDONUCLEASE. JRNL REF NUCLEIC ACIDS RES. V. 47 10914 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31584100 JRNL DOI 10.1093/NAR/GKZ838 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 41468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1120 - 4.9014 1.00 3004 161 0.2362 0.2934 REMARK 3 2 4.9014 - 3.8910 1.00 2910 133 0.1808 0.2114 REMARK 3 3 3.8910 - 3.3993 1.00 2865 156 0.1745 0.2070 REMARK 3 4 3.3993 - 3.0886 1.00 2810 158 0.1822 0.2008 REMARK 3 5 3.0886 - 2.8672 1.00 2806 169 0.1789 0.2401 REMARK 3 6 2.8672 - 2.6982 1.00 2814 146 0.1903 0.2153 REMARK 3 7 2.6982 - 2.5631 1.00 2805 152 0.1969 0.2485 REMARK 3 8 2.5631 - 2.4515 1.00 2787 147 0.2079 0.2087 REMARK 3 9 2.4515 - 2.3571 0.99 2771 152 0.2169 0.2570 REMARK 3 10 2.3571 - 2.2758 0.95 2652 156 0.2189 0.2465 REMARK 3 11 2.2758 - 2.2046 0.89 2477 134 0.2146 0.2643 REMARK 3 12 2.2046 - 2.1416 0.85 2351 128 0.2194 0.2836 REMARK 3 13 2.1416 - 2.0852 0.82 2266 134 0.2342 0.2948 REMARK 3 14 2.0852 - 2.0344 0.79 2201 127 0.2688 0.3206 REMARK 3 15 2.0344 - 1.9881 0.64 1811 85 0.3361 0.4069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3180 REMARK 3 ANGLE : 0.747 4327 REMARK 3 CHIRALITY : 0.055 509 REMARK 3 PLANARITY : 0.005 555 REMARK 3 DIHEDRAL : 2.403 2571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THICK PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1M HEPES PH 7,5 0,75 M LISO4, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.97850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.10450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.97850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.10450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 206 REMARK 465 PRO A 207 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PHE A 210 REMARK 465 ASP A 211 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 42 REMARK 465 GLY B 43 REMARK 465 ALA B 54 REMARK 465 ASP B 55 REMARK 465 GLY B 56 REMARK 465 VAL B 68 REMARK 465 PRO B 69 REMARK 465 ALA B 70 REMARK 465 GLN B 71 REMARK 465 ASN B 72 REMARK 465 LEU B 73 REMARK 465 ASN B 206 REMARK 465 PRO B 207 REMARK 465 ALA B 208 REMARK 465 LEU B 209 REMARK 465 PHE B 210 REMARK 465 ASP B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 PHE A 199 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ILE A 205 CG1 CG2 CD1 REMARK 470 ARG B 3 NE CZ NH1 NH2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 TYR B 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 THR B 88 OG1 CG2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 LYS B 160 CE NZ REMARK 470 GLU B 183 CD OE1 OE2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 ILE B 205 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 72.41 52.06 REMARK 500 ASP A 90 104.74 69.13 REMARK 500 ASP A 134 -169.31 -100.67 REMARK 500 THR B 88 -164.84 -78.79 REMARK 500 ASP B 134 -161.88 -103.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 ASP A 113 OD2 86.9 REMARK 620 3 GLU A 127 OE2 175.0 88.2 REMARK 620 4 PHE A 128 O 88.8 92.6 92.7 REMARK 620 5 XI7 A 303 O8 92.5 103.1 87.5 164.3 REMARK 620 6 XI7 A 303 O11 93.2 176.1 91.7 83.5 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD1 REMARK 620 2 ASP A 113 OD1 93.8 REMARK 620 3 HOH A 431 O 89.0 85.7 REMARK 620 4 HOH A 470 O 83.5 92.1 172.0 REMARK 620 5 XI7 A 303 O8 171.6 88.6 99.2 88.4 REMARK 620 6 XI7 A 303 O14 88.0 177.0 91.9 90.6 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 ASP B 113 OD2 95.7 REMARK 620 3 GLU B 127 OE2 175.4 85.4 REMARK 620 4 PHE B 128 O 87.3 90.2 88.2 REMARK 620 5 XI7 B 303 O10 91.0 172.7 87.7 87.1 REMARK 620 6 XI7 B 303 O8 90.2 109.8 93.7 159.9 73.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 90 OD2 REMARK 620 2 ASP B 113 OD1 105.0 REMARK 620 3 XI7 B 303 O8 163.6 90.4 REMARK 620 4 HOH B 450 O 82.5 93.3 91.4 REMARK 620 5 HOH B 461 O 82.9 82.1 105.0 163.0 REMARK 620 6 XI7 B 303 O14 79.6 170.7 85.9 95.3 90.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XI7 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XI7 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 DBREF 6QW5 A 1 211 UNP S4ZA26 S4ZA26_TOSV 1 211 DBREF 6QW5 B 1 211 UNP S4ZA26 S4ZA26_TOSV 1 211 SEQADV 6QW5 GLY A 0 UNP S4ZA26 EXPRESSION TAG SEQADV 6QW5 ASP A 155 UNP S4ZA26 ASN 155 CONFLICT SEQADV 6QW5 GLY B 0 UNP S4ZA26 EXPRESSION TAG SEQADV 6QW5 ASP B 155 UNP S4ZA26 ASN 155 CONFLICT SEQRES 1 A 212 GLY MSE GLU ARG ILE LEU LYS LYS GLN PRO ALA PRO VAL SEQRES 2 A 212 ARG ALA LEU THR ILE HIS PRO LEU ARG ARG TYR GLU SER SEQRES 3 A 212 SER ILE TYR ASP THR PRO ILE PRO ALA TYR VAL ILE LYS SEQRES 4 A 212 HIS SER SER ASP GLY VAL THR ILE ASP ILE ALA THR SER SEQRES 5 A 212 GLU LEU ALA ASP GLY GLN SER GLY SER THR ILE GLN PRO SEQRES 6 A 212 PHE GLU SER VAL PRO ALA GLN ASN LEU THR LEU PHE LYS SEQRES 7 A 212 HIS ASP PHE THR PHE GLY HIS LEU ALA ASP THR THR ASP SEQRES 8 A 212 LYS LYS PHE VAL GLU VAL PHE GLY VAL LEU GLU ASN ARG SEQRES 9 A 212 ALA ASP ASP SER ASP PHE GLN SER PRO ASP MSE ILE ILE SEQRES 10 A 212 GLU THR GLU THR GLY HIS VAL TYR VAL VAL GLU PHE THR SEQRES 11 A 212 THR THR MSE GLY ASP ALA ASN SER ALA ASP LEU ALA ALA SEQRES 12 A 212 ARG ASN LYS ILE ALA LYS TYR GLU ILE ALA CYS LEU ASP SEQRES 13 A 212 ARG SER ALA ILE LYS PRO ILE SER LEU TYR ILE ILE ALA SEQRES 14 A 212 VAL HIS PHE ASN GLY VAL VAL SER ASN LEU ASP LEU SER SEQRES 15 A 212 ASP GLU GLU VAL ASN GLU ILE VAL PHE ARG PHE ARG LEU SEQRES 16 A 212 ALA ARG ASP ILE PHE GLU GLU LEU ARG GLU ILE ASN PRO SEQRES 17 A 212 ALA LEU PHE ASP SEQRES 1 B 212 GLY MSE GLU ARG ILE LEU LYS LYS GLN PRO ALA PRO VAL SEQRES 2 B 212 ARG ALA LEU THR ILE HIS PRO LEU ARG ARG TYR GLU SER SEQRES 3 B 212 SER ILE TYR ASP THR PRO ILE PRO ALA TYR VAL ILE LYS SEQRES 4 B 212 HIS SER SER ASP GLY VAL THR ILE ASP ILE ALA THR SER SEQRES 5 B 212 GLU LEU ALA ASP GLY GLN SER GLY SER THR ILE GLN PRO SEQRES 6 B 212 PHE GLU SER VAL PRO ALA GLN ASN LEU THR LEU PHE LYS SEQRES 7 B 212 HIS ASP PHE THR PHE GLY HIS LEU ALA ASP THR THR ASP SEQRES 8 B 212 LYS LYS PHE VAL GLU VAL PHE GLY VAL LEU GLU ASN ARG SEQRES 9 B 212 ALA ASP ASP SER ASP PHE GLN SER PRO ASP MSE ILE ILE SEQRES 10 B 212 GLU THR GLU THR GLY HIS VAL TYR VAL VAL GLU PHE THR SEQRES 11 B 212 THR THR MSE GLY ASP ALA ASN SER ALA ASP LEU ALA ALA SEQRES 12 B 212 ARG ASN LYS ILE ALA LYS TYR GLU ILE ALA CYS LEU ASP SEQRES 13 B 212 ARG SER ALA ILE LYS PRO ILE SER LEU TYR ILE ILE ALA SEQRES 14 B 212 VAL HIS PHE ASN GLY VAL VAL SER ASN LEU ASP LEU SER SEQRES 15 B 212 ASP GLU GLU VAL ASN GLU ILE VAL PHE ARG PHE ARG LEU SEQRES 16 B 212 ALA ARG ASP ILE PHE GLU GLU LEU ARG GLU ILE ASN PRO SEQRES 17 B 212 ALA LEU PHE ASP MODRES 6QW5 MSE A 114 MET MODIFIED RESIDUE MODRES 6QW5 MSE A 132 MET MODIFIED RESIDUE MODRES 6QW5 MSE B 114 MET MODIFIED RESIDUE MODRES 6QW5 MSE B 132 MET MODIFIED RESIDUE HET MSE A 114 8 HET MSE A 132 8 HET MSE B 114 8 HET MSE B 132 8 HET MN A 301 1 HET MN A 302 1 HET XI7 A 303 14 HET SO4 A 304 5 HET SO4 A 305 5 HET MN B 301 1 HET MN B 302 1 HET XI7 B 303 14 HET SO4 B 304 5 HET SO4 B 305 5 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM XI7 2-4-DIOXO-4-PHENYLBUTANOIC ACID HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MN 4(MN 2+) FORMUL 5 XI7 2(C10 H8 O4) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *315(H2 O) HELIX 1 AA1 ARG A 3 GLN A 8 5 6 HELIX 2 AA2 THR A 50 LEU A 53 5 4 HELIX 3 AA3 PRO A 69 LEU A 73 5 5 HELIX 4 AA4 LEU A 75 PHE A 82 1 8 HELIX 5 AA5 LYS A 92 GLY A 98 1 7 HELIX 6 AA6 ASP A 105 GLN A 110 5 6 HELIX 7 AA7 ASP A 134 SER A 157 1 24 HELIX 8 AA8 SER A 181 ILE A 205 1 25 HELIX 9 AA9 ARG B 3 GLN B 8 5 6 HELIX 10 AB1 THR B 50 LEU B 53 5 4 HELIX 11 AB2 LEU B 75 GLY B 83 1 9 HELIX 12 AB3 LYS B 92 GLY B 98 1 7 HELIX 13 AB4 ASP B 105 GLN B 110 5 6 HELIX 14 AB5 ASP B 134 SER B 157 1 24 HELIX 15 AB6 SER B 181 GLU B 204 1 24 SHEET 1 AA1 8 ARG A 21 GLU A 24 0 SHEET 2 AA1 8 GLY A 173 SER A 176 -1 O VAL A 174 N TYR A 23 SHEET 3 AA1 8 ILE A 162 HIS A 170 -1 N ALA A 168 O VAL A 175 SHEET 4 AA1 8 LEU A 15 ILE A 17 1 N THR A 16 O ILE A 162 SHEET 5 AA1 8 LEU B 15 ILE B 17 -1 O LEU B 15 N ILE A 17 SHEET 6 AA1 8 ILE B 162 HIS B 170 1 O ILE B 162 N THR B 16 SHEET 7 AA1 8 GLY B 173 SER B 176 -1 O VAL B 175 N ALA B 168 SHEET 8 AA1 8 ARG B 21 GLU B 24 -1 N TYR B 23 O VAL B 174 SHEET 1 AA2 8 MSE A 114 GLU A 117 0 SHEET 2 AA2 8 VAL A 123 THR A 130 -1 O TYR A 124 N ILE A 116 SHEET 3 AA2 8 ILE A 162 HIS A 170 1 O TYR A 165 N VAL A 125 SHEET 4 AA2 8 LEU A 15 ILE A 17 1 N THR A 16 O ILE A 162 SHEET 5 AA2 8 LEU B 15 ILE B 17 -1 O LEU B 15 N ILE A 17 SHEET 6 AA2 8 ILE B 162 HIS B 170 1 O ILE B 162 N THR B 16 SHEET 7 AA2 8 VAL B 123 THR B 130 1 N VAL B 125 O TYR B 165 SHEET 8 AA2 8 MSE B 114 GLU B 117 -1 N ILE B 116 O TYR B 124 SHEET 1 AA3 3 TYR A 35 HIS A 39 0 SHEET 2 AA3 3 VAL A 44 ILE A 48 -1 O ASP A 47 N VAL A 36 SHEET 3 AA3 3 PHE A 65 VAL A 68 -1 O VAL A 68 N VAL A 44 SHEET 1 AA4 3 TYR B 35 LYS B 38 0 SHEET 2 AA4 3 THR B 45 ILE B 48 -1 O ASP B 47 N VAL B 36 SHEET 3 AA4 3 PHE B 65 GLU B 66 -1 O GLU B 66 N ILE B 46 LINK NE2 HIS A 78 MN MN A 301 1555 1555 2.21 LINK OD1 ASP A 90 MN MN A 302 1555 1555 2.03 LINK C ASP A 113 N MSE A 114 1555 1555 1.33 LINK OD1 ASP A 113 MN MN A 302 1555 1555 2.03 LINK OD2 ASP A 113 MN MN A 301 1555 1555 2.26 LINK C MSE A 114 N ILE A 115 1555 1555 1.33 LINK OE2 GLU A 127 MN MN A 301 1555 1555 2.20 LINK O PHE A 128 MN MN A 301 1555 1555 2.12 LINK C THR A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N GLY A 133 1555 1555 1.34 LINK NE2 HIS B 78 MN MN B 301 1555 1555 2.29 LINK OD2 ASP B 90 MN MN B 302 1555 1555 2.13 LINK C ASP B 113 N MSE B 114 1555 1555 1.33 LINK OD1 ASP B 113 MN MN B 302 1555 1555 2.18 LINK OD2 ASP B 113 MN MN B 301 1555 1555 2.20 LINK C MSE B 114 N ILE B 115 1555 1555 1.33 LINK OE2 GLU B 127 MN MN B 301 1555 1555 2.18 LINK O PHE B 128 MN MN B 301 1555 1555 2.21 LINK C THR B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N GLY B 133 1555 1555 1.34 LINK MN MN A 301 O8 XI7 A 303 1555 1555 2.11 LINK MN MN A 301 O11 XI7 A 303 1555 1555 2.17 LINK MN MN A 302 O HOH A 431 1555 1555 2.04 LINK MN MN A 302 O HOH A 470 1555 1555 2.20 LINK MN MN A 302 O8 XI7 A 303 1555 1555 2.05 LINK MN MN A 302 O14 XI7 A 303 1555 1555 2.03 LINK MN MN B 301 O10 XI7 B 303 1555 1555 2.26 LINK MN MN B 301 O8 XI7 B 303 1555 1555 2.25 LINK MN MN B 302 O8 XI7 B 303 1555 1555 2.08 LINK MN MN B 302 O HOH B 450 1555 1555 2.27 LINK MN MN B 302 O HOH B 461 1555 1555 2.21 LINK MN MN B 302 O14 XI7 B 303 1555 1555 2.10 SITE 1 AC1 6 HIS A 78 ASP A 113 GLU A 127 PHE A 128 SITE 2 AC1 6 MN A 302 XI7 A 303 SITE 1 AC2 6 ASP A 90 ASP A 113 MN A 301 XI7 A 303 SITE 2 AC2 6 HOH A 431 HOH A 470 SITE 1 AC3 13 HIS A 78 ASP A 90 ASP A 113 GLU A 127 SITE 2 AC3 13 PHE A 128 LYS A 145 MN A 301 MN A 302 SITE 3 AC3 13 HOH A 419 HOH A 431 HOH A 433 HOH A 436 SITE 4 AC3 13 HOH A 470 SITE 1 AC4 5 ASP A 134 ALA A 135 ASN A 172 HOH A 430 SITE 2 AC4 5 HOH A 491 SITE 1 AC5 4 GLU A 2 ARG A 3 LYS A 6 HOH A 429 SITE 1 AC6 6 HIS B 78 ASP B 113 GLU B 127 PHE B 128 SITE 2 AC6 6 MN B 302 XI7 B 303 SITE 1 AC7 6 ASP B 90 ASP B 113 MN B 301 XI7 B 303 SITE 2 AC7 6 HOH B 450 HOH B 461 SITE 1 AC8 14 ASP A 42 LEU B 75 HIS B 78 ASP B 90 SITE 2 AC8 14 ASP B 113 GLU B 127 PHE B 128 LYS B 145 SITE 3 AC8 14 MN B 301 MN B 302 HOH B 417 HOH B 426 SITE 4 AC8 14 HOH B 447 HOH B 461 SITE 1 AC9 4 GLU B 2 ARG B 3 LYS B 6 HOH B 419 SITE 1 AD1 5 SER A 41 GLN B 110 LYS B 148 HOH B 403 SITE 2 AD1 5 HOH B 406 CRYST1 101.957 106.209 58.623 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017058 0.00000