HEADER ANTIMICROBIAL PROTEIN 05-MAR-19 6QW9
TITLE CRYSTAL STRUCTURE OF KPC-2 COMPLEXED WITH RELEBACTAM (16 HOUR SOAK)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1;
COMPND 5 EC: 3.5.2.6;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA, KPC, KPC1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS INHIBITOR, RELEBACTAM, DIAZABICYCLOOCTANE, ANTIBIOTIC RESISTANCE.,
KEYWDS 2 ANTIMICROBIAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER
REVDAT 4 13-NOV-24 6QW9 1 REMARK
REVDAT 3 24-JAN-24 6QW9 1 REMARK
REVDAT 2 02-OCT-19 6QW9 1 JRNL
REVDAT 1 21-AUG-19 6QW9 0
JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,P.A.LANG,A.J.MULHOLLAND,J.BREM,
JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER
JRNL TITL MOLECULAR BASIS OF CLASS A BETA-LACTAMASE INHIBITION BY
JRNL TITL 2 RELEBACTAM.
JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019
JRNL REFN ESSN 1098-6596
JRNL PMID 31383664
JRNL DOI 10.1128/AAC.00564-19
REMARK 2
REMARK 2 RESOLUTION. 1.04 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.12_2829: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 126716
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.116
REMARK 3 R VALUE (WORKING SET) : 0.115
REMARK 3 FREE R VALUE : 0.134
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980
REMARK 3 FREE R VALUE TEST SET COUNT : 6309
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 32.8606 - 3.2306 1.00 4292 248 0.1400 0.1546
REMARK 3 2 3.2306 - 2.5645 1.00 4144 202 0.1164 0.1348
REMARK 3 3 2.5645 - 2.2404 1.00 4099 197 0.1021 0.1208
REMARK 3 4 2.2404 - 2.0356 1.00 4101 202 0.0971 0.1101
REMARK 3 5 2.0356 - 1.8897 1.00 4082 170 0.0940 0.1102
REMARK 3 6 1.8897 - 1.7783 1.00 4035 221 0.0866 0.1164
REMARK 3 7 1.7783 - 1.6893 1.00 4071 182 0.0870 0.1007
REMARK 3 8 1.6893 - 1.6157 1.00 4030 209 0.0805 0.1090
REMARK 3 9 1.6157 - 1.5535 1.00 3961 228 0.0824 0.1004
REMARK 3 10 1.5535 - 1.4999 1.00 4033 215 0.0837 0.1062
REMARK 3 11 1.4999 - 1.4530 1.00 3992 228 0.0870 0.1081
REMARK 3 12 1.4530 - 1.4115 1.00 4041 170 0.0912 0.1098
REMARK 3 13 1.4115 - 1.3743 1.00 3998 235 0.0977 0.1226
REMARK 3 14 1.3743 - 1.3408 1.00 3968 224 0.1024 0.1292
REMARK 3 15 1.3408 - 1.3103 1.00 4008 218 0.1046 0.1230
REMARK 3 16 1.3103 - 1.2824 1.00 3978 174 0.1068 0.1302
REMARK 3 17 1.2824 - 1.2568 1.00 4021 217 0.1148 0.1407
REMARK 3 18 1.2568 - 1.2331 1.00 4007 179 0.1233 0.1380
REMARK 3 19 1.2331 - 1.2110 1.00 3960 210 0.1248 0.1314
REMARK 3 20 1.2110 - 1.1905 1.00 3981 201 0.1264 0.1517
REMARK 3 21 1.1905 - 1.1713 1.00 3982 213 0.1353 0.1537
REMARK 3 22 1.1713 - 1.1533 1.00 3978 214 0.1391 0.1701
REMARK 3 23 1.1533 - 1.1363 1.00 3960 220 0.1426 0.1557
REMARK 3 24 1.1363 - 1.1203 1.00 3924 213 0.1550 0.1612
REMARK 3 25 1.1203 - 1.1052 1.00 3993 226 0.1641 0.1835
REMARK 3 26 1.1052 - 1.0908 1.00 3943 225 0.1754 0.1915
REMARK 3 27 1.0908 - 1.0772 1.00 3981 218 0.1973 0.1937
REMARK 3 28 1.0772 - 1.0642 1.00 3930 242 0.2107 0.1982
REMARK 3 29 1.0642 - 1.0518 1.00 3934 206 0.2276 0.2356
REMARK 3 30 1.0518 - 1.0400 1.00 3980 202 0.2484 0.2322
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.620
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 2302
REMARK 3 ANGLE : 1.325 3163
REMARK 3 CHIRALITY : 0.094 347
REMARK 3 PLANARITY : 0.013 418
REMARK 3 DIHEDRAL : 18.653 846
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6QW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-19.
REMARK 100 THE DEPOSITION ID IS D_1292101027.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 16-JUL-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I24
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.78
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126716
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.040
REMARK 200 RESOLUTION RANGE LOW (A) : 32.840
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 12.70
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.04
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5UL8
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.33
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% ETHANOL,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.96250
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.26750
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.96250
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.26750
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 10790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 4
REMARK 465 GLY A 5
REMARK 465 SER A 6
REMARK 465 SER A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 HIS A 11
REMARK 465 HIS A 12
REMARK 465 HIS A 13
REMARK 465 SER A 14
REMARK 465 SER A 15
REMARK 465 GLY A 16
REMARK 465 LEU A 17
REMARK 465 VAL A 18
REMARK 465 PRO A 19
REMARK 465 ARG A 20
REMARK 465 GLY A 21
REMARK 465 SER A 22
REMARK 465 HIS A 23
REMARK 465 MET A 24
REMARK 465 GLN A 295
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH11 ARG A 96 O HOH A 407 1.57
REMARK 500 O HOH A 403 O HOH A 624 1.93
REMARK 500 OD1 ASP A 271 O HOH A 401 1.93
REMARK 500 O HOH A 413 O HOH A 579 1.94
REMARK 500 O HOH A 629 O HOH A 700 1.95
REMARK 500 O HOH A 554 O HOH A 639 2.06
REMARK 500 O HOH A 671 O HOH A 683 2.11
REMARK 500 OD1 ASP A 271 O HOH A 402 2.16
REMARK 500 O HOH A 725 O HOH A 744 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 69 -142.22 53.18
REMARK 500 TRP A 105 60.09 74.69
REMARK 500 TRP A 105 69.33 61.76
REMARK 500 ARG A 220 -125.41 -115.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 153 0.10 SIDE CHAIN
REMARK 500 ARG A 284 0.08 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 746 DISTANCE = 5.92 ANGSTROMS
REMARK 525 HOH A 747 DISTANCE = 6.27 ANGSTROMS
REMARK 525 HOH A 748 DISTANCE = 6.63 ANGSTROMS
REMARK 525 HOH A 749 DISTANCE = 7.16 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MK7 A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue JJT A 306
DBREF 6QW9 A 25 295 UNP Q9F663 BLKPC_KLEPN 25 293
SEQADV 6QW9 MET A 4 UNP Q9F663 INITIATING METHIONINE
SEQADV 6QW9 GLY A 5 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 SER A 6 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 SER A 7 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 8 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 9 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 10 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 11 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 12 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 13 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 SER A 14 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 SER A 15 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 GLY A 16 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 LEU A 17 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 VAL A 18 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 PRO A 19 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 ARG A 20 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 GLY A 21 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 SER A 22 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 HIS A 23 UNP Q9F663 EXPRESSION TAG
SEQADV 6QW9 MET A 24 UNP Q9F663 EXPRESSION TAG
SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL
SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY
SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA
SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS
SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA
SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE
SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE
SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU
SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA
SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY
SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE
SEQRES 13 A 290 ARG LEU ASP ARG TRP GLU LEU GLU LEU ASN SER ALA ILE
SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL
SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU
SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS
SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL
SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS
SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP
SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR
SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS HIS SER GLU ALA VAL
SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY
SEQRES 23 A 290 VAL ASN GLY GLN
HET SO4 A 301 5
HET SO4 A 302 5
HET SO4 A 303 5
HET GOL A 304 14
HET MK7 A 305 43
HET JJT A 306 37
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM MK7 (2S,5R)-1-FORMYL-N-(PIPERIDIN-4-YL)-5-[(SULFOOXY)
HETNAM 2 MK7 AMINO]PIPERIDINE-2-CARBOXAMIDE
HETNAM JJT (2~{S})-5-AZANYLIDENE-2-(PIPERIDIN-4-YLCARBAMOYL)
HETNAM 2 JJT PIPERIDINE-1-CARBOXYLIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN MK7 MK-7655, BOUND FORM
FORMUL 2 SO4 3(O4 S 2-)
FORMUL 5 GOL C3 H8 O3
FORMUL 6 MK7 C12 H22 N4 O6 S
FORMUL 7 JJT C12 H20 N4 O3
FORMUL 8 HOH *349(H2 O)
HELIX 1 AA1 PRO A 32 GLY A 41 1 10
HELIX 2 AA2 SER A 71 GLN A 85 1 15
HELIX 3 AA3 GLY A 98 LEU A 102 5 5
HELIX 4 AA4 ILE A 108 LEU A 113 5 6
HELIX 5 AA5 VAL A 119 TYR A 129 1 11
HELIX 6 AA6 ASP A 131 GLY A 143 1 13
HELIX 7 AA7 GLY A 143 ILE A 155 1 13
HELIX 8 AA8 LEU A 167 SER A 171 5 5
HELIX 9 AA9 SER A 182 LEU A 195 1 14
HELIX 10 AB1 ALA A 200 GLY A 213 1 14
HELIX 11 AB2 ARG A 220 VAL A 225 5 6
HELIX 12 AB3 SER A 275 LEU A 290 1 16
SHEET 1 AA1 5 THR A 56 TYR A 60 0
SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60
SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O TYR A 264 N GLY A 45
SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N ASP A 246 O VAL A 263
SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251
SHEET 1 AA2 2 PHE A 66 PRO A 67 0
SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66
SHEET 1 AA3 2 PRO A 94 ILE A 95 0
SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95
SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.09
LINK OG SER A 70 C8 AMK7 A 305 1555 1555 1.37
LINK OG SER A 70 C05BJJT A 306 1555 1555 1.36
CISPEP 1 GLU A 166 LEU A 167 0 6.28
SITE 1 AC1 4 ARG A 61 THR A 254 GLY A 255 HOH A 654
SITE 1 AC2 8 SER A 275 GLU A 276 ALA A 277 HOH A 410
SITE 2 AC2 8 HOH A 422 HOH A 438 HOH A 525 HOH A 558
SITE 1 AC3 12 SER A 70 SER A 130 THR A 216 LYS A 234
SITE 2 AC3 12 THR A 235 GLY A 236 THR A 237 MK7 A 305
SITE 3 AC3 12 JJT A 306 HOH A 467 HOH A 490 HOH A 542
SITE 1 AC4 8 GLN A 205 LYS A 212 ALA A 230 TRP A 251
SITE 2 AC4 8 HOH A 417 HOH A 427 HOH A 447 HOH A 478
SITE 1 AC5 22 CYS A 69 SER A 70 LYS A 73 ALA A 88
SITE 2 AC5 22 TRP A 105 SER A 130 ASN A 132 ASN A 170
SITE 3 AC5 22 THR A 216 LYS A 234 THR A 235 GLY A 236
SITE 4 AC5 22 THR A 237 CYS A 238 SO4 A 303 JJT A 306
SITE 5 AC5 22 HOH A 408 HOH A 415 HOH A 467 HOH A 490
SITE 6 AC5 22 HOH A 537 HOH A 542
SITE 1 AC6 11 SER A 70 LYS A 73 TRP A 105 SER A 130
SITE 2 AC6 11 ASN A 132 GLY A 236 THR A 237 SO4 A 303
SITE 3 AC6 11 MK7 A 305 HOH A 415 HOH A 537
CRYST1 59.925 78.535 55.843 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016688 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012733 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017907 0.00000