HEADER ANTIMICROBIAL PROTEIN 05-MAR-19 6QWD TITLE CRYSTAL STRUCTURE OF KPC-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: PUCLAKPC1_410; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS ANTIBIOTIC RESISTANCE, SERINE BETA-LACTAMASE, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER REVDAT 4 23-OCT-24 6QWD 1 REMARK REVDAT 3 24-JAN-24 6QWD 1 REMARK REVDAT 2 02-OCT-19 6QWD 1 JRNL REVDAT 1 21-AUG-19 6QWD 0 JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,P.A.LANG,A.J.MULHOLLAND,J.BREM, JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER JRNL TITL MOLECULAR BASIS OF CLASS A BETA-LACTAMASE INHIBITION BY JRNL TITL 2 RELEBACTAM. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 31383664 JRNL DOI 10.1128/AAC.00564-19 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 83425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1885 - 3.7268 1.00 2863 139 0.1499 0.1620 REMARK 3 2 3.7268 - 2.9587 1.00 2747 140 0.1274 0.1427 REMARK 3 3 2.9587 - 2.5849 1.00 2678 155 0.1201 0.1477 REMARK 3 4 2.5849 - 2.3487 1.00 2678 143 0.1162 0.1428 REMARK 3 5 2.3487 - 2.1804 1.00 2663 165 0.1134 0.1193 REMARK 3 6 2.1804 - 2.0518 1.00 2646 144 0.1142 0.1179 REMARK 3 7 2.0518 - 1.9491 1.00 2650 140 0.1145 0.1281 REMARK 3 8 1.9491 - 1.8643 1.00 2654 126 0.1229 0.1354 REMARK 3 9 1.8643 - 1.7925 1.00 2676 126 0.1279 0.1388 REMARK 3 10 1.7925 - 1.7306 1.00 2616 160 0.1295 0.1439 REMARK 3 11 1.7306 - 1.6765 1.00 2630 132 0.1315 0.1651 REMARK 3 12 1.6765 - 1.6286 1.00 2649 143 0.1326 0.1635 REMARK 3 13 1.6286 - 1.5857 1.00 2619 141 0.1403 0.1753 REMARK 3 14 1.5857 - 1.5470 1.00 2630 127 0.1444 0.1538 REMARK 3 15 1.5470 - 1.5119 1.00 2623 133 0.1456 0.1602 REMARK 3 16 1.5119 - 1.4797 1.00 2621 149 0.1491 0.1626 REMARK 3 17 1.4797 - 1.4501 1.00 2610 162 0.1537 0.1545 REMARK 3 18 1.4501 - 1.4227 1.00 2616 134 0.1674 0.1941 REMARK 3 19 1.4227 - 1.3973 1.00 2611 123 0.1749 0.1918 REMARK 3 20 1.3973 - 1.3736 1.00 2619 145 0.1873 0.2038 REMARK 3 21 1.3736 - 1.3515 1.00 2622 137 0.1881 0.1930 REMARK 3 22 1.3515 - 1.3307 1.00 2610 143 0.1957 0.2059 REMARK 3 23 1.3307 - 1.3111 1.00 2607 143 0.1972 0.2029 REMARK 3 24 1.3111 - 1.2927 1.00 2586 144 0.2077 0.2113 REMARK 3 25 1.2927 - 1.2752 1.00 2613 138 0.2197 0.2417 REMARK 3 26 1.2752 - 1.2586 1.00 2652 123 0.2268 0.2180 REMARK 3 27 1.2586 - 1.2429 1.00 2597 134 0.2305 0.2772 REMARK 3 28 1.2429 - 1.2279 1.00 2597 145 0.2390 0.2401 REMARK 3 29 1.2279 - 1.2136 1.00 2611 129 0.2477 0.2604 REMARK 3 30 1.2136 - 1.2000 1.00 2633 135 0.2503 0.2695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2251 REMARK 3 ANGLE : 1.007 3091 REMARK 3 CHIRALITY : 0.077 339 REMARK 3 PLANARITY : 0.008 408 REMARK 3 DIHEDRAL : 12.701 816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5523 10.2081 -4.2769 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.1834 REMARK 3 T33: 0.1152 T12: -0.0061 REMARK 3 T13: 0.0049 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.6784 L22: 7.5091 REMARK 3 L33: 6.2378 L12: 0.7993 REMARK 3 L13: -0.4891 L23: -3.9882 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.4035 S13: -0.0062 REMARK 3 S21: -0.6158 S22: -0.0383 S23: -0.0573 REMARK 3 S31: 0.1491 S32: 0.1508 S33: 0.0857 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8129 18.1671 2.4762 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.0873 REMARK 3 T33: 0.0686 T12: 0.0046 REMARK 3 T13: -0.0094 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.3382 L22: 1.8719 REMARK 3 L33: 2.2278 L12: 1.0519 REMARK 3 L13: -0.7418 L23: -0.6508 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.2140 S13: 0.1500 REMARK 3 S21: -0.0714 S22: -0.0029 S23: 0.0287 REMARK 3 S31: -0.1048 S32: -0.0142 S33: -0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3439 26.9826 28.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.1186 REMARK 3 T33: 0.1049 T12: 0.0066 REMARK 3 T13: 0.0006 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.7342 L22: 2.5371 REMARK 3 L33: 3.4053 L12: 0.3499 REMARK 3 L13: 1.3582 L23: -0.6942 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: -0.1801 S13: 0.2302 REMARK 3 S21: 0.1595 S22: 0.0186 S23: 0.0374 REMARK 3 S31: -0.5608 S32: -0.0439 S33: 0.1317 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2489 15.3786 31.4556 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.1246 REMARK 3 T33: 0.0816 T12: -0.0039 REMARK 3 T13: -0.0106 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.3694 L22: 2.2044 REMARK 3 L33: 4.5966 L12: 0.4208 REMARK 3 L13: 1.2947 L23: -0.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.0328 S13: -0.1760 REMARK 3 S21: 0.0320 S22: -0.0020 S23: 0.0028 REMARK 3 S31: 0.1935 S32: 0.0641 S33: -0.0828 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1674 23.4633 25.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1019 REMARK 3 T33: 0.1004 T12: -0.0111 REMARK 3 T13: -0.0022 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 5.0648 L22: 3.5315 REMARK 3 L33: 2.5924 L12: -3.8006 REMARK 3 L13: 2.9157 L23: -2.6917 REMARK 3 S TENSOR REMARK 3 S11: -0.1366 S12: -0.2771 S13: 0.1815 REMARK 3 S21: 0.1567 S22: 0.0761 S23: -0.0957 REMARK 3 S31: -0.1362 S32: -0.0832 S33: 0.0779 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9559 19.6231 14.1574 REMARK 3 T TENSOR REMARK 3 T11: 0.0680 T22: 0.0729 REMARK 3 T33: 0.0667 T12: -0.0100 REMARK 3 T13: -0.0007 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.2198 L22: 0.5398 REMARK 3 L33: 0.6305 L12: 0.1772 REMARK 3 L13: -0.1432 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0325 S13: 0.0732 REMARK 3 S21: 0.0100 S22: -0.0219 S23: -0.0417 REMARK 3 S31: -0.0499 S32: 0.0510 S33: 0.0031 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2568 11.6129 7.4598 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0795 REMARK 3 T33: 0.0173 T12: -0.0057 REMARK 3 T13: -0.0096 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.7663 L22: 8.0802 REMARK 3 L33: 1.4687 L12: 5.0056 REMARK 3 L13: -2.1812 L23: -2.9945 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.1014 S13: -0.0126 REMARK 3 S21: -0.1051 S22: 0.0595 S23: 0.0270 REMARK 3 S31: 0.0512 S32: -0.0043 S33: -0.0060 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2832 14.1494 -0.4711 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.1404 REMARK 3 T33: 0.1196 T12: 0.0011 REMARK 3 T13: 0.0226 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.9576 L22: 6.4460 REMARK 3 L33: 5.5847 L12: 2.1689 REMARK 3 L13: -2.2030 L23: -5.4604 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.0745 S13: -0.0454 REMARK 3 S21: -0.1932 S22: -0.1352 S23: -0.4155 REMARK 3 S31: 0.0896 S32: 0.2545 S33: 0.2652 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.78 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 32.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% ETHANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.00300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.31200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.00300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.31200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 MET A 24 REMARK 465 GLN A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 408 O HOH A 622 1.92 REMARK 500 O4 SO4 A 301 O HOH A 401 1.93 REMARK 500 O HOH A 642 O HOH A 661 1.99 REMARK 500 O HOH A 593 O HOH A 677 2.03 REMARK 500 O HOH A 589 O HOH A 609 2.05 REMARK 500 OD1 ASP A 271 O HOH A 402 2.06 REMARK 500 O HOH A 513 O HOH A 632 2.14 REMARK 500 O HOH A 607 O HOH A 655 2.18 REMARK 500 O HOH A 537 O HOH A 664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 507 O HOH A 642 4455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -144.33 51.42 REMARK 500 TRP A 105 73.54 54.61 REMARK 500 TRP A 105 58.69 74.65 REMARK 500 ARG A 220 -125.22 -113.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 703 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 704 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 6.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 DBREF1 6QWD A 25 295 UNP A0A220QIS6_KLEPN DBREF2 6QWD A A0A220QIS6 26 294 SEQADV 6QWD MET A 4 UNP A0A220QIS INITIATING METHIONINE SEQADV 6QWD GLY A 5 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD SER A 6 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD SER A 7 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 8 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 9 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 10 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 11 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 12 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 13 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD SER A 14 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD SER A 15 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD GLY A 16 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD LEU A 17 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD VAL A 18 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD PRO A 19 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD ARG A 20 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD GLY A 21 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD SER A 22 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD HIS A 23 UNP A0A220QIS EXPRESSION TAG SEQADV 6QWD MET A 24 UNP A0A220QIS EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE SEQRES 13 A 290 ARG LEU ASP ARG TRP GLU LEU GLU LEU ASN SER ALA ILE SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS TYR SER GLU ALA VAL SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY SEQRES 23 A 290 VAL ASN GLY GLN HET SO4 A 301 10 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET GOL A 306 14 HET GOL A 307 13 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *306(H2 O) HELIX 1 AA1 PRO A 32 GLY A 41 1 10 HELIX 2 AA2 SER A 71 GLN A 87 1 17 HELIX 3 AA3 GLY A 98 LEU A 102 5 5 HELIX 4 AA4 ILE A 108 LEU A 113 5 6 HELIX 5 AA5 VAL A 119 TYR A 129 1 11 HELIX 6 AA6 ASP A 131 LEU A 142 1 12 HELIX 7 AA7 GLY A 143 ILE A 155 1 13 HELIX 8 AA8 LEU A 167 SER A 171 5 5 HELIX 9 AA9 SER A 182 LEU A 195 1 14 HELIX 10 AB1 ALA A 200 GLY A 213 1 14 HELIX 11 AB2 ARG A 220 VAL A 225 5 6 HELIX 12 AB3 SER A 275 LEU A 290 1 16 SHEET 1 AA1 5 THR A 56 TYR A 60 0 SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O VAL A 260 N MET A 49 SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259 SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.06 CISPEP 1 GLU A 166 LEU A 167 0 6.41 SITE 1 AC1 11 SER A 70 SER A 130 THR A 216 LYS A 234 SITE 2 AC1 11 THR A 235 GLY A 236 THR A 237 HOH A 401 SITE 3 AC1 11 HOH A 463 HOH A 521 HOH A 545 SITE 1 AC2 6 ARG A 184 PRO A 226 ALA A 227 HOH A 408 SITE 2 AC2 6 HOH A 495 HOH A 622 SITE 1 AC3 3 ARG A 61 GLY A 255 HOH A 635 SITE 1 AC4 7 SER A 275 GLU A 276 ALA A 277 HOH A 405 SITE 2 AC4 7 HOH A 419 HOH A 477 HOH A 589 SITE 1 AC5 5 ILE A 173 TYR A 241 LYS A 270 HOH A 411 SITE 2 AC5 5 HOH A 473 SITE 1 AC6 8 GLN A 205 VAL A 208 LYS A 212 ALA A 230 SITE 2 AC6 8 TRP A 251 HOH A 424 HOH A 446 HOH A 498 SITE 1 AC7 7 ARG A 65 PRO A 67 PRO A 174 GLY A 175 SITE 2 AC7 7 ARG A 266 HOH A 413 HOH A 438 CRYST1 60.006 78.624 56.008 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017855 0.00000