HEADER OXIDOREDUCTASE 11-MAR-19 6QZM TITLE H30 MNSOD-3 MUTANT I COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN] 2, MITOCHONDRIAL; COMPND 3 CHAIN: A, C; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SOD-3, C08A9.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE, MUTATION, DISMUTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BONETTA,C.H.TRINH,G.J.HUNTER,T.HUNTER REVDAT 5 24-JAN-24 6QZM 1 REMARK REVDAT 4 16-SEP-20 6QZM 1 REMARK REVDAT 3 09-SEP-20 6QZM 1 REMARK LINK REVDAT 2 06-MAY-20 6QZM 1 COMPND REVDAT 1 19-FEB-20 6QZM 0 JRNL AUTH R.BONETTA,C.H.TRINH,G.J.HUNTER,T.HUNTER JRNL TITL H30 MNSOD-3 MUTANT II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3245 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4406 ; 1.331 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 5.196 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;32.182 ;25.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 553 ;12.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 6.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2484 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3112 ; 1.172 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1308 ; 2.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1291 ; 3.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4360 5.9960 -0.6985 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0272 REMARK 3 T33: 0.0530 T12: 0.0092 REMARK 3 T13: 0.0228 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.5009 L22: 0.7669 REMARK 3 L33: 0.5895 L12: -0.0204 REMARK 3 L13: -0.1691 L23: -0.3786 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.0332 S13: -0.0574 REMARK 3 S21: -0.0952 S22: -0.0716 S23: -0.1440 REMARK 3 S31: 0.1110 S32: 0.0560 S33: 0.0995 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 194 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6477 -2.6920 14.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0906 REMARK 3 T33: 0.0420 T12: 0.0007 REMARK 3 T13: 0.0078 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.5707 L22: 0.6034 REMARK 3 L33: 0.6239 L12: -0.1230 REMARK 3 L13: 0.2189 L23: -0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.1817 S13: -0.0560 REMARK 3 S21: 0.0388 S22: 0.0620 S23: 0.1165 REMARK 3 S31: -0.0109 S32: -0.1428 S33: -0.0625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.33000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.66500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.99500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.66500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.99500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 353 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 348 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 98 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -62.65 -104.54 REMARK 500 ASN A 141 -121.01 57.26 REMARK 500 TYR A 161 -17.58 -143.60 REMARK 500 LYS A 166 -130.72 50.93 REMARK 500 LYS C 29 -62.15 -102.92 REMARK 500 ASP C 84 79.13 -113.64 REMARK 500 ASN C 141 -124.01 55.03 REMARK 500 TYR C 161 -17.09 -146.84 REMARK 500 LYS C 166 -131.92 52.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 87.5 REMARK 620 3 ASP A 155 OD2 83.1 111.5 REMARK 620 4 HIS A 159 NE2 88.3 132.8 114.6 REMARK 620 5 HOH A 349 O 177.1 91.7 94.6 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 74 NE2 87.1 REMARK 620 3 ASP C 155 OD2 84.3 114.8 REMARK 620 4 HIS C 159 NE2 87.6 129.5 114.5 REMARK 620 5 HOH C 344 O 178.9 91.9 96.6 92.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 DBREF 6QZM A 1 194 UNP P41977 SODM2_CAEEL 25 218 DBREF 6QZM C 1 194 UNP P41977 SODM2_CAEEL 25 218 SEQADV 6QZM PHE A 30 UNP P41977 HIS 54 CONFLICT SEQADV 6QZM PHE C 30 UNP P41977 HIS 54 CONFLICT SEQRES 1 A 194 LYS HIS THR LEU PRO ASP LEU PRO PHE ASP TYR ALA ASP SEQRES 2 A 194 LEU GLU PRO VAL ILE SER HIS GLU ILE MET GLN LEU HIS SEQRES 3 A 194 HIS GLN LYS PHE HIS ALA THR TYR VAL ASN ASN LEU ASN SEQRES 4 A 194 GLN ILE GLU GLU LYS LEU HIS GLU ALA VAL SER LYS GLY SEQRES 5 A 194 ASN LEU LYS GLU ALA ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 A 194 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 A 194 THR ASN LEU ALA LYS ASP GLY GLY GLU PRO SER LYS GLU SEQRES 8 A 194 LEU MET ASP THR ILE LYS ARG ASP PHE GLY SER LEU ASP SEQRES 9 A 194 ASN LEU GLN LYS ARG LEU SER ASP ILE THR ILE ALA VAL SEQRES 10 A 194 GLN GLY SER GLY TRP GLY TRP LEU GLY TYR CYS LYS LYS SEQRES 11 A 194 ASP LYS ILE LEU LYS ILE ALA THR CYS ALA ASN GLN ASP SEQRES 12 A 194 PRO LEU GLU GLY MET VAL PRO LEU PHE GLY ILE ASP VAL SEQRES 13 A 194 TRP GLU HIS ALA TYR TYR LEU GLN TYR LYS ASN VAL ARG SEQRES 14 A 194 PRO ASP TYR VAL HIS ALA ILE TRP LYS ILE ALA ASN TRP SEQRES 15 A 194 LYS ASN ILE SER GLU ARG PHE ALA ASN ALA ARG GLN SEQRES 1 C 194 LYS HIS THR LEU PRO ASP LEU PRO PHE ASP TYR ALA ASP SEQRES 2 C 194 LEU GLU PRO VAL ILE SER HIS GLU ILE MET GLN LEU HIS SEQRES 3 C 194 HIS GLN LYS PHE HIS ALA THR TYR VAL ASN ASN LEU ASN SEQRES 4 C 194 GLN ILE GLU GLU LYS LEU HIS GLU ALA VAL SER LYS GLY SEQRES 5 C 194 ASN LEU LYS GLU ALA ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 C 194 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 C 194 THR ASN LEU ALA LYS ASP GLY GLY GLU PRO SER LYS GLU SEQRES 8 C 194 LEU MET ASP THR ILE LYS ARG ASP PHE GLY SER LEU ASP SEQRES 9 C 194 ASN LEU GLN LYS ARG LEU SER ASP ILE THR ILE ALA VAL SEQRES 10 C 194 GLN GLY SER GLY TRP GLY TRP LEU GLY TYR CYS LYS LYS SEQRES 11 C 194 ASP LYS ILE LEU LYS ILE ALA THR CYS ALA ASN GLN ASP SEQRES 12 C 194 PRO LEU GLU GLY MET VAL PRO LEU PHE GLY ILE ASP VAL SEQRES 13 C 194 TRP GLU HIS ALA TYR TYR LEU GLN TYR LYS ASN VAL ARG SEQRES 14 C 194 PRO ASP TYR VAL HIS ALA ILE TRP LYS ILE ALA ASN TRP SEQRES 15 C 194 LYS ASN ILE SER GLU ARG PHE ALA ASN ALA ARG GLN HET MN A 201 1 HET SO4 A 202 5 HET MN C 201 1 HET SO4 C 202 5 HET SO4 C 203 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *369(H2 O) HELIX 1 AA1 SER A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 LYS A 51 1 23 HELIX 3 AA3 ASN A 53 LEU A 60 1 8 HELIX 4 AA4 LEU A 60 ASN A 80 1 21 HELIX 5 AA5 SER A 89 GLY A 101 1 13 HELIX 6 AA6 SER A 102 ALA A 116 1 15 HELIX 7 AA7 TRP A 157 ALA A 160 5 4 HELIX 8 AA8 TYR A 161 LYS A 166 1 6 HELIX 9 AA9 VAL A 168 TRP A 177 1 10 HELIX 10 AB1 LYS A 178 ALA A 180 5 3 HELIX 11 AB2 ASN A 181 ARG A 193 1 13 HELIX 12 AB3 SER C 19 LYS C 29 1 11 HELIX 13 AB4 LYS C 29 GLY C 52 1 24 HELIX 14 AB5 ASN C 53 LEU C 60 1 8 HELIX 15 AB6 LEU C 60 ASN C 80 1 21 HELIX 16 AB7 SER C 89 GLY C 101 1 13 HELIX 17 AB8 SER C 102 ALA C 116 1 15 HELIX 18 AB9 TRP C 157 ALA C 160 5 4 HELIX 19 AC1 TYR C 161 LYS C 166 1 6 HELIX 20 AC2 VAL C 168 TRP C 177 1 10 HELIX 21 AC3 LYS C 178 ALA C 180 5 3 HELIX 22 AC4 ASN C 181 ARG C 193 1 13 SHEET 1 AA1 3 ILE A 133 ALA A 140 0 SHEET 2 AA1 3 GLY A 121 CYS A 128 -1 N TRP A 124 O ALA A 137 SHEET 3 AA1 3 VAL A 149 ASP A 155 -1 O VAL A 149 N TYR A 127 SHEET 1 AA2 3 ILE C 133 ALA C 140 0 SHEET 2 AA2 3 GLY C 121 CYS C 128 -1 N TRP C 124 O ALA C 137 SHEET 3 AA2 3 VAL C 149 ASP C 155 -1 O VAL C 149 N TYR C 127 LINK NE2 HIS A 26 MN MN A 201 1555 1555 2.18 LINK NE2 HIS A 74 MN MN A 201 1555 1555 2.19 LINK OD2 ASP A 155 MN MN A 201 1555 1555 2.03 LINK NE2 HIS A 159 MN MN A 201 1555 1555 2.20 LINK MN MN A 201 O HOH A 349 1555 1555 1.99 LINK NE2 HIS C 26 MN MN C 201 1555 1555 2.16 LINK NE2 HIS C 74 MN MN C 201 1555 1555 2.19 LINK OD2 ASP C 155 MN MN C 201 1555 1555 2.06 LINK NE2 HIS C 159 MN MN C 201 1555 1555 2.24 LINK MN MN C 201 O HOH C 344 1555 1555 1.96 CISPEP 1 GLU A 15 PRO A 16 0 6.29 CISPEP 2 GLU C 15 PRO C 16 0 8.04 SITE 1 AC1 5 HIS A 26 HIS A 74 ASP A 155 HIS A 159 SITE 2 AC1 5 HOH A 349 SITE 1 AC2 5 HIS A 2 THR A 3 HIS A 71 HOH A 369 SITE 2 AC2 5 HOH A 391 SITE 1 AC3 5 HIS C 26 HIS C 74 ASP C 155 HIS C 159 SITE 2 AC3 5 HOH C 344 SITE 1 AC4 4 HIS C 2 THR C 3 HIS C 71 HOH C 374 SITE 1 AC5 3 LYS C 29 ASN C 167 VAL C 168 CRYST1 81.490 81.490 138.660 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007212 0.00000