HEADER TRANSCRIPTION 13-MAR-19 6R0M TITLE HISTONE FOLD DOMAIN OF ATNF-YB2/NF-YC3 IN P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-YB2; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NF-YC3; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AXX17_AT5G46140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: AXX17_AT1G49320; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NF-Y, TRANSCRIPTION FACTOR, ARABIDOPSIS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAVES-SANJUAN,N.GNESUTTA,M.CHIARA,A.BERNARDINI,F.FORNARA,D.HORNER, AUTHOR 2 M.NARDINI,R.MANTOVANI REVDAT 4 24-JAN-24 6R0M 1 REMARK REVDAT 3 03-MAR-21 6R0M 1 JRNL REVDAT 2 30-DEC-20 6R0M 1 JRNL REVDAT 1 30-SEP-20 6R0M 0 JRNL AUTH A.CHAVES-SANJUAN,N.GNESUTTA,A.GOBBINI,D.MARTIGNAGO, JRNL AUTH 2 A.BERNARDINI,F.FORNARA,R.MANTOVANI,M.NARDINI JRNL TITL STRUCTURAL DETERMINANTS FOR NF-Y SUBUNIT ORGANIZATION AND JRNL TITL 2 NF-Y/DNA ASSOCIATION IN PLANTS. JRNL REF PLANT J. V. 105 49 2021 JRNL REFN ESSN 1365-313X JRNL PMID 33098724 JRNL DOI 10.1111/TPJ.15038 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3018 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2580 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2848 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.63 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 170 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.88160 REMARK 3 B22 (A**2) : -1.40790 REMARK 3 B33 (A**2) : 4.28950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.276 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.265 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.209 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2906 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3910 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1084 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 410 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2906 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 390 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3529 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.6303 15.8007 9.7448 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.0481 REMARK 3 T33: -0.1065 T12: 0.0316 REMARK 3 T13: -0.0746 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.6975 L22: 2.3088 REMARK 3 L33: 1.8987 L12: 0.3596 REMARK 3 L13: 0.8567 L23: 0.4664 REMARK 3 S TENSOR REMARK 3 S11: -0.2681 S12: 0.0387 S13: 0.2135 REMARK 3 S21: 0.0073 S22: 0.1090 S23: 0.1145 REMARK 3 S31: -0.2562 S32: -0.3500 S33: 0.1592 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.8428 13.0918 11.4314 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0151 REMARK 3 T33: -0.1556 T12: 0.0807 REMARK 3 T13: -0.0151 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.8875 L22: 2.2382 REMARK 3 L33: 3.6397 L12: 0.7587 REMARK 3 L13: 0.3320 L23: 0.2168 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.1166 S13: 0.0360 REMARK 3 S21: 0.0189 S22: -0.0897 S23: 0.2324 REMARK 3 S31: -0.1817 S32: -0.5439 S33: 0.1963 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.3974 3.5562 32.0188 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: -0.0779 REMARK 3 T33: -0.1101 T12: -0.0204 REMARK 3 T13: -0.0252 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 2.7692 L22: 2.8665 REMARK 3 L33: 3.4774 L12: -0.9866 REMARK 3 L13: 0.0770 L23: -0.4267 REMARK 3 S TENSOR REMARK 3 S11: 0.1562 S12: 0.0932 S13: 0.0563 REMARK 3 S21: -0.0022 S22: -0.2861 S23: -0.2719 REMARK 3 S31: -0.2329 S32: 0.1241 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.3448 9.9084 33.5496 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: -0.0670 REMARK 3 T33: -0.1401 T12: -0.0273 REMARK 3 T13: -0.0443 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.6713 L22: 4.0135 REMARK 3 L33: 3.1595 L12: -0.6232 REMARK 3 L13: -0.3287 L23: -1.1165 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1097 S13: 0.2373 REMARK 3 S21: 0.1339 S22: -0.1065 S23: -0.0862 REMARK 3 S31: -0.5442 S32: 0.0431 S33: 0.0807 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.010876 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1 M MES PH 6.5 AND 0.3 REMARK 280 M LITHIUM CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.01150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.32700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.32700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.01150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 MET B 54 REMARK 465 THR B 55 REMARK 465 GLN B 56 REMARK 465 PHE B 57 REMARK 465 LYS B 58 REMARK 465 GLU B 59 REMARK 465 ILE B 60 REMARK 465 GLU B 61 REMARK 465 LYS B 62 REMARK 465 THR B 63 REMARK 465 THR B 64 REMARK 465 ASP B 65 REMARK 465 PHE B 66 REMARK 465 LYS B 67 REMARK 465 ASN B 68 REMARK 465 GLY C 20 REMARK 465 SER C 21 REMARK 465 MET D 54 REMARK 465 THR D 55 REMARK 465 GLN D 56 REMARK 465 PHE D 57 REMARK 465 LYS D 58 REMARK 465 GLU D 59 REMARK 465 ILE D 60 REMARK 465 GLU D 61 REMARK 465 LYS D 62 REMARK 465 THR D 63 REMARK 465 THR D 64 REMARK 465 ASP D 65 REMARK 465 PHE D 66 REMARK 465 LYS D 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 84 OE2 GLU A 101 4555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 100 59.27 -90.63 REMARK 500 ARG B 87 -78.00 -112.17 REMARK 500 SER D 70 35.28 -155.42 REMARK 500 ARG D 87 -80.62 -128.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 111 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 111 10.88 REMARK 500 ARG B 111 11.81 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6R0M A 24 116 UNP A0A178UPH7_ARATH DBREF2 6R0M A A0A178UPH7 24 116 DBREF1 6R0M B 55 148 UNP A0A178WGU5_ARATH DBREF2 6R0M B A0A178WGU5 55 148 DBREF1 6R0M C 24 116 UNP A0A178UPH7_ARATH DBREF2 6R0M C A0A178UPH7 24 116 DBREF1 6R0M D 55 148 UNP A0A178WGU5_ARATH DBREF2 6R0M D A0A178WGU5 55 148 SEQADV 6R0M GLY A 20 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M SER A 21 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M HIS A 22 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M MET A 23 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M MET B 54 UNP A0A178WGU INITIATING METHIONINE SEQADV 6R0M GLY C 20 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M SER C 21 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M HIS C 22 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M MET C 23 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0M MET D 54 UNP A0A178WGU INITIATING METHIONINE SEQRES 1 A 97 GLY SER HIS MET SER PRO ARG GLU GLN ASP ARG PHE LEU SEQRES 2 A 97 PRO ILE ALA ASN VAL SER ARG ILE MET LYS LYS ALA LEU SEQRES 3 A 97 PRO ALA ASN ALA LYS ILE SER LYS ASP ALA LYS GLU THR SEQRES 4 A 97 MET GLN GLU CYS VAL SER GLU PHE ILE SER PHE VAL THR SEQRES 5 A 97 GLY GLU ALA SER ASP LYS CYS GLN LYS GLU LYS ARG LYS SEQRES 6 A 97 THR ILE ASN GLY ASP ASP LEU LEU TRP ALA MET THR THR SEQRES 7 A 97 LEU GLY PHE GLU ASP TYR VAL GLU PRO LEU LYS VAL TYR SEQRES 8 A 97 LEU GLN ARG PHE ARG GLU SEQRES 1 B 95 MET THR GLN PHE LYS GLU ILE GLU LYS THR THR ASP PHE SEQRES 2 B 95 LYS ASN HIS SER LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 B 95 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 B 95 ALA PRO VAL VAL PHE ALA ARG ALA CYS GLU MET PHE ILE SEQRES 5 B 95 LEU GLU LEU THR LEU ARG SER TRP ASN HIS THR GLU GLU SEQRES 6 B 95 ASN LYS ARG ARG THR LEU GLN LYS ASN ASP ILE ALA ALA SEQRES 7 B 95 ALA VAL THR ARG THR ASP ILE PHE ASP PHE LEU VAL ASP SEQRES 8 B 95 ILE VAL PRO ARG SEQRES 1 C 97 GLY SER HIS MET SER PRO ARG GLU GLN ASP ARG PHE LEU SEQRES 2 C 97 PRO ILE ALA ASN VAL SER ARG ILE MET LYS LYS ALA LEU SEQRES 3 C 97 PRO ALA ASN ALA LYS ILE SER LYS ASP ALA LYS GLU THR SEQRES 4 C 97 MET GLN GLU CYS VAL SER GLU PHE ILE SER PHE VAL THR SEQRES 5 C 97 GLY GLU ALA SER ASP LYS CYS GLN LYS GLU LYS ARG LYS SEQRES 6 C 97 THR ILE ASN GLY ASP ASP LEU LEU TRP ALA MET THR THR SEQRES 7 C 97 LEU GLY PHE GLU ASP TYR VAL GLU PRO LEU LYS VAL TYR SEQRES 8 C 97 LEU GLN ARG PHE ARG GLU SEQRES 1 D 95 MET THR GLN PHE LYS GLU ILE GLU LYS THR THR ASP PHE SEQRES 2 D 95 LYS ASN HIS SER LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 D 95 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 D 95 ALA PRO VAL VAL PHE ALA ARG ALA CYS GLU MET PHE ILE SEQRES 5 D 95 LEU GLU LEU THR LEU ARG SER TRP ASN HIS THR GLU GLU SEQRES 6 D 95 ASN LYS ARG ARG THR LEU GLN LYS ASN ASP ILE ALA ALA SEQRES 7 D 95 ALA VAL THR ARG THR ASP ILE PHE ASP PHE LEU VAL ASP SEQRES 8 D 95 ILE VAL PRO ARG FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 SER A 24 ASP A 29 1 6 HELIX 2 AA2 PRO A 33 ALA A 44 1 12 HELIX 3 AA3 SER A 52 GLU A 81 1 30 HELIX 4 AA4 ASN A 87 LEU A 98 1 12 HELIX 5 AA5 PHE A 100 GLU A 116 1 17 HELIX 6 AA6 PRO B 72 LYS B 81 1 10 HELIX 7 AA7 GLU B 92 ASN B 119 1 28 HELIX 8 AA8 GLN B 125 THR B 136 1 12 HELIX 9 AA9 ASP B 137 ILE B 145 5 9 HELIX 10 AB1 SER C 24 ASP C 29 1 6 HELIX 11 AB2 PRO C 33 LEU C 45 1 13 HELIX 12 AB3 SER C 52 GLU C 81 1 30 HELIX 13 AB4 ASN C 87 LEU C 98 1 12 HELIX 14 AB5 PHE C 100 GLU C 116 1 17 HELIX 15 AB6 PRO D 72 ALA D 82 1 11 HELIX 16 AB7 GLU D 92 ASN D 119 1 28 HELIX 17 AB8 GLN D 125 THR D 136 1 12 HELIX 18 AB9 ASP D 137 VAL D 143 5 7 SHEET 1 AA1 2 LYS A 50 ILE A 51 0 SHEET 2 AA1 2 THR B 123 LEU B 124 1 O LEU B 124 N LYS A 50 SHEET 1 AA2 2 THR A 85 ILE A 86 0 SHEET 2 AA2 2 MET B 88 ILE B 89 1 O MET B 88 N ILE A 86 SHEET 1 AA3 2 LYS C 50 ILE C 51 0 SHEET 2 AA3 2 THR D 123 LEU D 124 1 O LEU D 124 N LYS C 50 SHEET 1 AA4 2 THR C 85 ILE C 86 0 SHEET 2 AA4 2 MET D 88 ILE D 89 1 O MET D 88 N ILE C 86 CRYST1 70.023 74.980 86.654 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011540 0.00000