HEADER TOXIN 14-MAR-19 6R1J TITLE STRUCTURE OF THE SOLUBLE AHLC TRIPLE HEAD MUTANT OF THE TRIPARTITE TITLE 2 ALPHA-PORE FORMING TOXIN, AHL, FROM AEROMONAS HYDROPHILA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: J, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA J-1; SOURCE 3 ORGANISM_TAXID: 1419584; SOURCE 4 GENE: V469_08880; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRIPARTITE PORE-FORMING TOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.CHURCHILL-ANGUS,J.S.WILSON,P.J.BAKER REVDAT 3 24-JAN-24 6R1J 1 LINK REVDAT 2 17-JUL-19 6R1J 1 JRNL REVDAT 1 10-JUL-19 6R1J 0 JRNL AUTH J.S.WILSON,A.M.CHURCHILL-ANGUS,S.P.DAVIES,S.E.SEDELNIKOVA, JRNL AUTH 2 S.B.TZOKOV,J.B.RAFFERTY,P.A.BULLOUGH,C.BISSON,P.J.BAKER JRNL TITL IDENTIFICATION AND STRUCTURAL ANALYSIS OF THE TRIPARTITE JRNL TITL 2 ALPHA-PORE FORMING TOXIN OF AEROMONAS HYDROPHILA. JRNL REF NAT COMMUN V. 10 2900 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31263098 JRNL DOI 10.1038/S41467-019-10777-X REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3926 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3676 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5329 ; 1.613 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8558 ; 1.427 ; 1.562 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 3.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;32.544 ;25.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;12.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.059 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4438 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 689 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2058 ; 4.311 ; 4.878 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2057 ; 4.310 ; 4.875 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2563 ; 5.819 ; 7.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2564 ; 5.818 ; 7.279 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1868 ; 4.784 ; 5.398 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1869 ; 4.783 ; 5.401 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2765 ; 6.776 ; 7.923 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4493 ; 8.409 ;60.483 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4459 ; 8.423 ;60.364 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6R1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 76.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 8.0, 10% PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.99167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 193.98333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 145.48750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 242.47917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.49583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.99167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 193.98333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 242.47917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 145.48750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.49583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 44.26900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 76.67616 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -48.49583 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET J 1 REMARK 465 SER J 2 REMARK 465 ALA J 239 REMARK 465 GLY J 240 REMARK 465 GLN J 241 REMARK 465 GLY J 242 REMARK 465 HIS J 271 REMARK 465 HIS J 272 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ASN D 3 REMARK 465 GLY D 74 REMARK 465 PRO D 75 REMARK 465 PHE D 76 REMARK 465 ALA D 233 REMARK 465 ASN D 234 REMARK 465 VAL D 235 REMARK 465 ALA D 236 REMARK 465 ARG D 237 REMARK 465 ASP D 238 REMARK 465 ALA D 239 REMARK 465 GLY D 240 REMARK 465 GLN D 241 REMARK 465 GLY D 242 REMARK 465 ASP D 243 REMARK 465 HIS D 269 REMARK 465 HIS D 270 REMARK 465 HIS D 271 REMARK 465 HIS D 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE D 232 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR D 73 O HOH D 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 39 O HOH D 301 5554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 231 148.73 -170.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH J 534 DISTANCE = 6.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA J 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU J 17 OE2 REMARK 620 2 HOH J 419 O 92.9 REMARK 620 3 HOH J 464 O 85.5 133.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA J 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR J 224 OG1 REMARK 620 2 ASP J 264 OD2 111.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA J 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA J 302 DBREF1 6R1J J 1 266 UNP A0A1U6XZ15_AERHY DBREF2 6R1J J A0A1U6XZ15 1 266 DBREF1 6R1J D 1 266 UNP A0A1U6XZ15_AERHY DBREF2 6R1J D A0A1U6XZ15 1 266 SEQADV 6R1J THR J 156 UNP A0A1U6XZ1 LEU 156 ENGINEERED MUTATION SEQADV 6R1J THR J 160 UNP A0A1U6XZ1 LEU 160 ENGINEERED MUTATION SEQADV 6R1J THR J 161 UNP A0A1U6XZ1 LEU 161 ENGINEERED MUTATION SEQADV 6R1J HIS J 267 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS J 268 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS J 269 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS J 270 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS J 271 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS J 272 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J THR D 156 UNP A0A1U6XZ1 LEU 156 ENGINEERED MUTATION SEQADV 6R1J THR D 160 UNP A0A1U6XZ1 LEU 160 ENGINEERED MUTATION SEQADV 6R1J THR D 161 UNP A0A1U6XZ1 LEU 161 ENGINEERED MUTATION SEQADV 6R1J HIS D 267 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS D 268 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS D 269 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS D 270 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS D 271 UNP A0A1U6XZ1 EXPRESSION TAG SEQADV 6R1J HIS D 272 UNP A0A1U6XZ1 EXPRESSION TAG SEQRES 1 J 272 MET SER ASN GLY ILE LEU SER GLN SER ILE ALA ASN MET SEQRES 2 J 272 GLN GLN ALA GLU ALA THR ILE GLN SER PHE SER GLY LEU SEQRES 3 J 272 PRO GLN ASN ALA VAL ASN ILE GLN GLN ASN VAL GLY GLU SEQRES 4 J 272 VAL VAL ALA ALA LEU LEU PRO GLN VAL GLN THR MET GLN SEQRES 5 J 272 GLN GLN VAL LEU ALA PHE ALA ALA ARG LEU GLU LEU GLN SEQRES 6 J 272 LEU THR GLN GLN LEU ALA ASN THR GLY PRO PHE ASN PRO SEQRES 7 J 272 GLU ALA LEU LYS ALA PHE VAL ASP LEU VAL GLN GLN GLU SEQRES 8 J 272 ILE ALA PRO ILE GLN THR LEU THR ALA GLN THR LEU THR SEQRES 9 J 272 ALA SER GLN SER ALA ASN ASP ARG ILE THR GLN ASP ASN SEQRES 10 J 272 ILE ALA LEU GLN ARG ILE GLY VAL GLU LEU GLN ALA THR SEQRES 11 J 272 ILE ALA GLY LEU GLN SER ASN LEU ASP GLY ALA ARG GLN SEQRES 12 J 272 GLU LEU ASP SER LEU ASN LYS LYS LYS LEU TYR LEU THR SEQRES 13 J 272 GLY LEU GLY THR THR GLY LEU PRO GLY LEU ILE ALA LEU SEQRES 14 J 272 ALA VAL THR LEU THR GLN THR GLN ASN LYS VAL SER SER SEQRES 15 J 272 LEU GLU GLY GLN VAL ASN GLN ILE GLU GLY GLN ILE GLN SEQRES 16 J 272 ARG GLN GLN GLY PHE LEU GLY GLN THR THR ALA PHE SER SEQRES 17 J 272 GLN GLN PHE GLY SER LEU ILE ASP ARG VAL SER LYS VAL SEQRES 18 J 272 GLY ASN THR ILE SER LEU LEU GLY GLY ASP ILE ALA ASN SEQRES 19 J 272 VAL ALA ARG ASP ALA GLY GLN GLY ASP PRO GLU LEU ALA SEQRES 20 J 272 ARG LEU PHE PHE THR ALA ALA LEU THR GLU VAL ARG THR SEQRES 21 J 272 LEU GLN VAL ASP ALA SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 272 MET SER ASN GLY ILE LEU SER GLN SER ILE ALA ASN MET SEQRES 2 D 272 GLN GLN ALA GLU ALA THR ILE GLN SER PHE SER GLY LEU SEQRES 3 D 272 PRO GLN ASN ALA VAL ASN ILE GLN GLN ASN VAL GLY GLU SEQRES 4 D 272 VAL VAL ALA ALA LEU LEU PRO GLN VAL GLN THR MET GLN SEQRES 5 D 272 GLN GLN VAL LEU ALA PHE ALA ALA ARG LEU GLU LEU GLN SEQRES 6 D 272 LEU THR GLN GLN LEU ALA ASN THR GLY PRO PHE ASN PRO SEQRES 7 D 272 GLU ALA LEU LYS ALA PHE VAL ASP LEU VAL GLN GLN GLU SEQRES 8 D 272 ILE ALA PRO ILE GLN THR LEU THR ALA GLN THR LEU THR SEQRES 9 D 272 ALA SER GLN SER ALA ASN ASP ARG ILE THR GLN ASP ASN SEQRES 10 D 272 ILE ALA LEU GLN ARG ILE GLY VAL GLU LEU GLN ALA THR SEQRES 11 D 272 ILE ALA GLY LEU GLN SER ASN LEU ASP GLY ALA ARG GLN SEQRES 12 D 272 GLU LEU ASP SER LEU ASN LYS LYS LYS LEU TYR LEU THR SEQRES 13 D 272 GLY LEU GLY THR THR GLY LEU PRO GLY LEU ILE ALA LEU SEQRES 14 D 272 ALA VAL THR LEU THR GLN THR GLN ASN LYS VAL SER SER SEQRES 15 D 272 LEU GLU GLY GLN VAL ASN GLN ILE GLU GLY GLN ILE GLN SEQRES 16 D 272 ARG GLN GLN GLY PHE LEU GLY GLN THR THR ALA PHE SER SEQRES 17 D 272 GLN GLN PHE GLY SER LEU ILE ASP ARG VAL SER LYS VAL SEQRES 18 D 272 GLY ASN THR ILE SER LEU LEU GLY GLY ASP ILE ALA ASN SEQRES 19 D 272 VAL ALA ARG ASP ALA GLY GLN GLY ASP PRO GLU LEU ALA SEQRES 20 D 272 ARG LEU PHE PHE THR ALA ALA LEU THR GLU VAL ARG THR SEQRES 21 D 272 LEU GLN VAL ASP ALA SER HIS HIS HIS HIS HIS HIS HET NA J 301 1 HET NA J 302 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *214(H2 O) HELIX 1 AA1 GLY J 4 SER J 22 1 19 HELIX 2 AA2 PRO J 27 ALA J 43 1 17 HELIX 3 AA3 ALA J 43 ALA J 71 1 29 HELIX 4 AA4 ASN J 77 LEU J 158 1 82 HELIX 5 AA5 GLY J 159 THR J 161 5 3 HELIX 6 AA6 GLY J 162 ARG J 237 1 76 HELIX 7 AA7 PRO J 244 ALA J 265 1 22 HELIX 8 AA8 ILE D 5 SER D 22 1 18 HELIX 9 AA9 PRO D 27 ALA D 43 1 17 HELIX 10 AB1 ALA D 43 ASN D 72 1 30 HELIX 11 AB2 ALA D 80 LEU D 158 1 79 HELIX 12 AB3 GLY D 159 THR D 161 5 3 HELIX 13 AB4 GLY D 162 GLY D 229 1 68 HELIX 14 AB5 GLU D 245 ALA D 265 1 21 LINK OE2 GLU J 17 NA NA J 302 1555 1555 2.41 LINK OG1 THR J 224 NA NA J 301 1555 1555 2.84 LINK OD2 ASP J 264 NA NA J 301 1555 1555 2.37 LINK NA NA J 302 O HOH J 419 1555 1555 2.96 LINK NA NA J 302 O HOH J 464 1555 1555 2.95 SITE 1 AC1 2 THR J 224 ASP J 264 SITE 1 AC2 3 GLU J 17 HOH J 419 HOH J 464 CRYST1 88.538 88.538 290.975 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011295 0.006521 0.000000 0.00000 SCALE2 0.000000 0.013042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003437 0.00000