HEADER LIGASE 14-MAR-19 6R1N TITLE CRYSTAL STRUCTURE OF S. AUREUS SERYL-TRNA SYNTHETASE COMPLEXED TO TITLE 2 SERYL SULFAMOYL ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERYL-TRNA SYNTHETASE,SERRS,SERYL-TRNA(SER/SEC) SYNTHETASE; COMPND 5 EC: 6.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SERS, SERS_3, CSC83_09220, CSC87_00755, CV021_04380, SOURCE 5 EP54_05580, EQ90_05790, HMPREF3211_02116, NCTC10654_00091, SOURCE 6 NCTC10702_00150, NCTC13196_01224, NCTC5664_00935, RK64_00725, SOURCE 7 SAMEA1466939_02107, SAMEA1708674_02321; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYL-TRNA SYNTHETASE, CLASS II, PROTEIN SYNTHESIS, INHIBITOR, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SALIMRAJ,R.CAIN,D.I.ROPER REVDAT 3 24-JAN-24 6R1N 1 REMARK REVDAT 2 10-FEB-21 6R1N 1 REMARK LINK REVDAT 1 22-JAN-20 6R1N 0 JRNL AUTH R.CAIN,R.SALIMRAJ,A.S.PUNEKAR,D.BELLINI,C.W.G.FISHWICK, JRNL AUTH 2 L.CZAPLEWSKI,D.J.SCOTT,G.HARRIS,C.G.DOWSON,A.J.LLOYD, JRNL AUTH 3 D.I.ROPER JRNL TITL STRUCTURE-GUIDED ENHANCEMENT OF SELECTIVITY OF CHEMICAL JRNL TITL 2 PROBE INHIBITORS TARGETING BACTERIAL SERYL-TRNA SYNTHETASE. JRNL REF J.MED.CHEM. V. 62 9703 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31626547 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01131 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.43 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 661 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2233 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 634 REMARK 3 BIN R VALUE (WORKING SET) : 0.2191 REMARK 3 BIN FREE R VALUE : 0.3389 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.20170 REMARK 3 B22 (A**2) : -6.65760 REMARK 3 B33 (A**2) : 0.45600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.177 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.161 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.151 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3441 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4647 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1242 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 606 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3441 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 453 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 11 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4442 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - 24} REMARK 3 ORIGIN FOR THE GROUP (A): -3.8794 -41.2433 12.5543 REMARK 3 T TENSOR REMARK 3 T11: -0.1010 T22: 0.1007 REMARK 3 T33: -0.0356 T12: 0.0021 REMARK 3 T13: 0.1031 T23: 0.1041 REMARK 3 L TENSOR REMARK 3 L11: 2.4213 L22: 3.4442 REMARK 3 L33: 1.8785 L12: -0.3065 REMARK 3 L13: 0.6001 L23: -0.7942 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: -0.5442 S13: -0.4586 REMARK 3 S21: 0.3807 S22: 0.2393 S23: 0.4367 REMARK 3 S31: -0.1429 S32: -0.3836 S33: -0.1123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|25 - 64} REMARK 3 ORIGIN FOR THE GROUP (A): 17.1921 -58.3590 15.8169 REMARK 3 T TENSOR REMARK 3 T11: -0.0663 T22: -0.1087 REMARK 3 T33: 0.0096 T12: -0.0746 REMARK 3 T13: 0.0290 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 3.0811 REMARK 3 L33: 2.7577 L12: -2.9104 REMARK 3 L13: 1.5138 L23: -1.2656 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0199 S13: -0.4164 REMARK 3 S21: 0.1004 S22: 0.2338 S23: 0.1200 REMARK 3 S31: 0.1124 S32: 0.2882 S33: -0.2637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|65 - 103} REMARK 3 ORIGIN FOR THE GROUP (A): 17.2015 -61.1823 8.3356 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: -0.0882 REMARK 3 T33: 0.0392 T12: 0.0193 REMARK 3 T13: -0.0822 T23: -0.1276 REMARK 3 L TENSOR REMARK 3 L11: 1.0700 L22: 4.9456 REMARK 3 L33: 2.2624 L12: -2.9104 REMARK 3 L13: -0.6963 L23: -2.3810 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: -0.1112 S13: -0.1370 REMARK 3 S21: -0.3050 S22: 0.0588 S23: 0.0665 REMARK 3 S31: 0.5442 S32: 0.1636 S33: -0.1161 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|104 - 139} REMARK 3 ORIGIN FOR THE GROUP (A): -19.7412 -22.3327 -1.6513 REMARK 3 T TENSOR REMARK 3 T11: -0.1250 T22: 0.0218 REMARK 3 T33: -0.0337 T12: 0.0105 REMARK 3 T13: 0.0478 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.4692 L22: 1.3034 REMARK 3 L33: 1.7483 L12: -1.3963 REMARK 3 L13: 1.1616 L23: -1.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.1787 S12: -0.3973 S13: -0.1895 REMARK 3 S21: 0.1144 S22: 0.1951 S23: 0.1858 REMARK 3 S31: -0.1246 S32: -0.3496 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|140 - 251} REMARK 3 ORIGIN FOR THE GROUP (A): -2.5300 -27.2394 -16.3603 REMARK 3 T TENSOR REMARK 3 T11: -0.0503 T22: 0.0333 REMARK 3 T33: 0.0071 T12: -0.0016 REMARK 3 T13: 0.0260 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9222 L22: 0.5548 REMARK 3 L33: 0.8496 L12: 0.0926 REMARK 3 L13: 0.2979 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.0421 S13: -0.0114 REMARK 3 S21: 0.0211 S22: -0.0431 S23: 0.0063 REMARK 3 S31: 0.0499 S32: -0.0188 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|252 - 279} REMARK 3 ORIGIN FOR THE GROUP (A): -7.6050 -28.2381 -15.5937 REMARK 3 T TENSOR REMARK 3 T11: -0.0504 T22: 0.0462 REMARK 3 T33: 0.0363 T12: 0.0079 REMARK 3 T13: 0.0275 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.4462 L22: 0.0000 REMARK 3 L33: 1.9857 L12: -0.9669 REMARK 3 L13: 0.8042 L23: -0.4330 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.1052 S13: -0.1855 REMARK 3 S21: -0.0510 S22: -0.0182 S23: 0.1176 REMARK 3 S31: 0.0625 S32: -0.2510 S33: 0.0645 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|280 - 399} REMARK 3 ORIGIN FOR THE GROUP (A): -5.6780 -23.1599 -2.8055 REMARK 3 T TENSOR REMARK 3 T11: -0.0965 T22: 0.0279 REMARK 3 T33: -0.0625 T12: 0.0112 REMARK 3 T13: 0.0042 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.1013 L22: 0.4470 REMARK 3 L33: 0.8422 L12: -0.1327 REMARK 3 L13: 0.2523 L23: -0.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.2769 S13: -0.0125 REMARK 3 S21: 0.0835 S22: 0.0598 S23: 0.0003 REMARK 3 S31: -0.0752 S32: -0.0317 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|400 - 427} REMARK 3 ORIGIN FOR THE GROUP (A): -16.8292 -7.6877 -24.3120 REMARK 3 T TENSOR REMARK 3 T11: -0.0326 T22: -0.0017 REMARK 3 T33: 0.0082 T12: 0.0576 REMARK 3 T13: -0.0257 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.5048 L22: 3.9203 REMARK 3 L33: 3.4891 L12: 1.8415 REMARK 3 L13: -1.1708 L23: -0.4676 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.3031 S13: 0.4753 REMARK 3 S21: -0.2453 S22: 0.0005 S23: 0.1624 REMARK 3 S31: -0.1134 S32: -0.2752 S33: 0.0558 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.026 REMARK 200 RESOLUTION RANGE LOW (A) : 91.611 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 5 13 % W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.80550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.80550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.21900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.20650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.21900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.20650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.80550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.21900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.20650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.80550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.21900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.20650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.80550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 67 REMARK 465 ASN A 68 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 ALA A 268 REMARK 465 GLY A 269 REMARK 465 ARG A 270 REMARK 465 LYS A 428 REMARK 465 GLU A 429 REMARK 465 LEU A 430 REMARK 465 ALA A 431 REMARK 465 LEU A 432 REMARK 465 VAL A 433 REMARK 465 PRO A 434 REMARK 465 ARG A 435 REMARK 465 GLY A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 ALA A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 40 CE NZ REMARK 470 LYS A 54 CE NZ REMARK 470 LEU A 61 CD1 REMARK 470 LYS A 62 NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ARG A 64 NH1 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ALA A 69 N CB REMARK 470 VAL A 72 CG2 REMARK 470 ILE A 73 CD1 REMARK 470 LYS A 84 CD CE NZ REMARK 470 LYS A 86 NZ REMARK 470 GLN A 114 NE2 REMARK 470 ARG A 162 NE CZ NH1 NH2 REMARK 470 GLU A 216 CD OE1 OE2 REMARK 470 ALA A 265 O REMARK 470 ARG A 273 NE CZ NH1 NH2 REMARK 470 ARG A 277 NH1 NH2 REMARK 470 ILE A 321 CD1 REMARK 470 LYS A 369 NZ REMARK 470 LYS A 372 CE NZ REMARK 470 VAL A 427 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 168 -120.69 55.85 REMARK 500 THR A 357 -128.56 51.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 349 OE1 REMARK 620 2 SSA A 501 O2S 85.5 REMARK 620 3 HOH A 645 O 86.8 147.1 REMARK 620 4 HOH A 733 O 90.7 124.4 87.5 REMARK 620 5 HOH A 933 O 163.8 97.5 82.1 100.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SSA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 507 DBREF 6R1N A 1 428 UNP X5DWM7 X5DWM7_STAAU 1 428 SEQADV 6R1N GLU A 429 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N LEU A 430 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N ALA A 431 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N LEU A 432 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N VAL A 433 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N PRO A 434 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N ARG A 435 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N GLY A 436 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N SER A 437 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N SER A 438 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N ALA A 439 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 440 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 441 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 442 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 443 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 444 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 445 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 446 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 447 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 448 UNP X5DWM7 EXPRESSION TAG SEQADV 6R1N HIS A 449 UNP X5DWM7 EXPRESSION TAG SEQRES 1 A 449 MET LEU ASP ILE ARG LEU PHE ARG ASN GLU PRO ASP THR SEQRES 2 A 449 VAL LYS SER LYS ILE GLU LEU ARG GLY ASP ASP PRO LYS SEQRES 3 A 449 VAL VAL ASP GLU ILE LEU GLU LEU ASP GLU GLN ARG ARG SEQRES 4 A 449 LYS LEU ILE SER ALA THR GLU GLU MET LYS ALA ARG ARG SEQRES 5 A 449 ASN LYS VAL SER GLU GLU ILE ALA LEU LYS LYS ARG ASN SEQRES 6 A 449 LYS GLU ASN ALA ASP ASP VAL ILE ALA GLU MET ARG THR SEQRES 7 A 449 LEU GLY ASP ASP ILE LYS GLU LYS ASP SER GLN LEU ASN SEQRES 8 A 449 GLU ILE ASP ASN LYS MET THR GLY ILE LEU CYS ARG ILE SEQRES 9 A 449 PRO ASN LEU ILE SER ASP ASP VAL PRO GLN GLY GLU SER SEQRES 10 A 449 ASP GLU ASP ASN VAL GLU VAL LYS LYS TRP GLY THR PRO SEQRES 11 A 449 ARG GLU PHE SER PHE GLU PRO LYS ALA HIS TRP ASP ILE SEQRES 12 A 449 VAL GLU GLU LEU LYS MET ALA ASP PHE ASP ARG ALA ALA SEQRES 13 A 449 LYS VAL SER GLY ALA ARG PHE VAL TYR LEU THR ASN GLU SEQRES 14 A 449 GLY ALA GLN LEU GLU ARG ALA LEU MET ASN TYR MET ILE SEQRES 15 A 449 THR LYS HIS THR THR GLN HIS GLY TYR THR GLU MET MET SEQRES 16 A 449 VAL PRO GLN LEU VAL ASN ALA ASP THR MET TYR GLY THR SEQRES 17 A 449 GLY GLN LEU PRO LYS PHE GLU GLU ASP LEU PHE LYS VAL SEQRES 18 A 449 GLU LYS GLU GLY LEU TYR THR ILE PRO THR ALA GLU VAL SEQRES 19 A 449 PRO LEU THR ASN PHE TYR ARG ASN GLU ILE ILE GLN PRO SEQRES 20 A 449 GLY VAL LEU PRO GLU LYS PHE THR GLY GLN SER ALA CYS SEQRES 21 A 449 PHE ARG SER GLU ALA GLY SER ALA GLY ARG ASP THR ARG SEQRES 22 A 449 GLY LEU ILE ARG LEU HIS GLN PHE ASP LYS VAL GLU MET SEQRES 23 A 449 VAL ARG PHE GLU GLN PRO GLU ASP SER TRP ASN ALA LEU SEQRES 24 A 449 GLU GLU MET THR THR ASN ALA GLU ALA ILE LEU GLU GLU SEQRES 25 A 449 LEU GLY LEU PRO TYR ARG ARG VAL ILE LEU CYS THR GLY SEQRES 26 A 449 ASP ILE GLY PHE SER ALA SER LYS THR TYR ASP LEU GLU SEQRES 27 A 449 VAL TRP LEU PRO SER TYR ASN ASP TYR LYS GLU ILE SER SEQRES 28 A 449 SER CYS SER ASN CYS THR ASP PHE GLN ALA ARG ARG ALA SEQRES 29 A 449 ASN ILE ARG PHE LYS ARG ASP LYS ALA ALA LYS PRO GLU SEQRES 30 A 449 LEU ALA HIS THR LEU ASN GLY SER GLY LEU ALA VAL GLY SEQRES 31 A 449 ARG THR PHE ALA ALA ILE VAL GLU ASN TYR GLN ASN GLU SEQRES 32 A 449 ASP GLY THR VAL THR ILE PRO GLU ALA LEU VAL PRO PHE SEQRES 33 A 449 MET GLY GLY LYS THR GLN ILE SER LYS PRO VAL LYS GLU SEQRES 34 A 449 LEU ALA LEU VAL PRO ARG GLY SER SER ALA HIS HIS HIS SEQRES 35 A 449 HIS HIS HIS HIS HIS HIS HIS HET SSA A 501 29 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET PEG A 506 7 HET MG A 507 1 HETNAM SSA 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SSA C13 H19 N7 O8 S FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 PEG C4 H10 O3 FORMUL 8 MG MG 2+ FORMUL 9 HOH *384(H2 O) HELIX 1 AA1 ASP A 3 GLU A 10 1 8 HELIX 2 AA2 GLU A 10 ARG A 21 1 12 HELIX 3 AA3 LYS A 26 LYS A 66 1 41 HELIX 4 AA4 ASP A 70 CYS A 102 1 33 HELIX 5 AA5 SER A 117 ASN A 121 5 5 HELIX 6 AA6 ALA A 139 LEU A 147 1 9 HELIX 7 AA7 PHE A 152 GLY A 160 1 9 HELIX 8 AA8 ASN A 168 GLN A 188 1 21 HELIX 9 AA9 ASN A 201 THR A 208 1 8 HELIX 10 AB1 PHE A 214 LEU A 218 5 5 HELIX 11 AB2 ALA A 232 PHE A 239 1 8 HELIX 12 AB3 GLN A 291 GLU A 293 5 3 HELIX 13 AB4 ASP A 294 LEU A 313 1 20 HELIX 14 AB5 ASP A 358 ASN A 365 1 8 HELIX 15 AB6 VAL A 389 TYR A 400 1 12 HELIX 16 AB7 PRO A 410 GLY A 418 5 9 SHEET 1 AA1 8 VAL A 122 TRP A 127 0 SHEET 2 AA1 8 TYR A 317 ILE A 321 -1 O ARG A 319 N VAL A 124 SHEET 3 AA1 8 LYS A 333 TRP A 340 -1 O GLU A 338 N ARG A 318 SHEET 4 AA1 8 TYR A 347 ASN A 355 -1 O CYS A 353 N TYR A 335 SHEET 5 AA1 8 HIS A 380 ALA A 388 -1 O ASN A 383 N SER A 354 SHEET 6 AA1 8 GLN A 280 GLU A 290 -1 N VAL A 284 O GLY A 386 SHEET 7 AA1 8 GLU A 252 PHE A 261 -1 N PHE A 254 O VAL A 287 SHEET 8 AA1 8 THR A 192 GLU A 193 1 N THR A 192 O LYS A 253 SHEET 1 AA2 2 ALA A 150 ASP A 151 0 SHEET 2 AA2 2 TYR A 165 LEU A 166 -1 O TYR A 165 N ASP A 151 SHEET 1 AA3 3 LEU A 199 VAL A 200 0 SHEET 2 AA3 3 LEU A 226 THR A 228 -1 O TYR A 227 N VAL A 200 SHEET 3 AA3 3 LYS A 220 VAL A 221 -1 N VAL A 221 O LEU A 226 SHEET 1 AA4 3 GLU A 243 ILE A 245 0 SHEET 2 AA4 3 ILE A 366 PHE A 368 1 O ARG A 367 N ILE A 245 SHEET 3 AA4 3 GLU A 377 LEU A 378 -1 O GLU A 377 N PHE A 368 SHEET 1 AA5 2 VAL A 407 THR A 408 0 SHEET 2 AA5 2 GLN A 422 ILE A 423 -1 O ILE A 423 N VAL A 407 LINK OE1 GLU A 349 MG MG A 507 1555 1555 2.43 LINK O2S SSA A 501 MG MG A 507 1555 1555 2.49 LINK MG MG A 507 O HOH A 645 1555 1555 2.95 LINK MG MG A 507 O HOH A 733 1555 1555 2.26 LINK MG MG A 507 O HOH A 933 1555 1555 2.47 CISPEP 1 LEU A 211 PRO A 212 0 2.70 CISPEP 2 LEU A 250 PRO A 251 0 2.88 CISPEP 3 GLY A 386 LEU A 387 0 3.04 SITE 1 AC1 23 THR A 231 GLU A 233 ARG A 262 GLU A 264 SITE 2 AC1 23 ILE A 276 ARG A 277 LEU A 278 PHE A 281 SITE 3 AC1 23 LYS A 283 GLU A 285 GLU A 349 ILE A 350 SITE 4 AC1 23 SER A 351 SER A 352 ASN A 383 SER A 385 SITE 5 AC1 23 ALA A 388 ARG A 391 PEG A 506 MG A 507 SITE 6 AC1 23 HOH A 734 HOH A 786 HOH A 857 SITE 1 AC2 6 MET A 195 GLN A 257 SER A 258 ALA A 259 SITE 2 AC2 6 ASP A 282 HOH A 737 SITE 1 AC3 3 THR A 167 GLU A 252 HOH A 691 SITE 1 AC4 6 LYS A 213 PHE A 214 ILE A 327 GLY A 328 SITE 2 AC4 6 PHE A 329 HOH A 708 SITE 1 AC5 4 ASP A 94 MET A 97 THR A 98 HOH A 664 SITE 1 AC6 6 GLN A 210 ASP A 217 PRO A 230 THR A 231 SITE 2 AC6 6 SSA A 501 HOH A 660 SITE 1 AC7 6 GLU A 349 SSA A 501 HOH A 645 HOH A 733 SITE 2 AC7 6 HOH A 904 HOH A 933 CRYST1 94.438 116.413 91.611 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010916 0.00000