data_6R1V # _entry.id 6R1V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6R1V pdb_00006r1v 10.2210/pdb6r1v/pdb WWPDB D_1292101101 ? ? BMRB 34379 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of sortase A from S. aureus in complex with 2-(aminomethyl)-3-hydroxy-4H-pyran-4-one based prodrug' _pdbx_database_related.db_id 34379 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6R1V _pdbx_database_status.recvd_initial_deposition_date 2019-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jaudzems, K.' 1 0000-0003-3922-2447 'Leonchiks, A.' 2 0000-0001-5907-4969 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Infect Dis.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2373-8227 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 186 _citation.page_last 194 _citation.title 'Targeting Bacterial Sortase A with Covalent Inhibitors: 27 New Starting Points for Structure-Based Hit-to-Lead Optimization.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsinfecdis.9b00265 _citation.pdbx_database_id_PubMed 31724850 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jaudzems, K.' 1 ? primary 'Kurbatska, V.' 2 ? primary 'Je Kabsons, A.' 3 ? primary 'Bobrovs, R.' 4 ? primary 'Rudevica, Z.' 5 ? primary 'Leonchiks, A.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6R1V _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sortase A' 16825.062 1 3.4.22.70 ? ? ? 2 non-polymer syn '6-(hydroxymethyl)-3-oxidanyl-2-(thiophen-3-ylmethyl)pyran-4-one' 238.260 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Surface protein sorting A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKK GSMVYFKVGNETRKYKMTSIRDVKPTDVEVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK ; _entity_poly.pdbx_seq_one_letter_code_can ;MQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKK GSMVYFKVGNETRKYKMTSIRDVKPTDVEVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ALA n 1 4 LYS n 1 5 PRO n 1 6 GLN n 1 7 ILE n 1 8 PRO n 1 9 LYS n 1 10 ASP n 1 11 LYS n 1 12 SER n 1 13 LYS n 1 14 VAL n 1 15 ALA n 1 16 GLY n 1 17 TYR n 1 18 ILE n 1 19 GLU n 1 20 ILE n 1 21 PRO n 1 22 ASP n 1 23 ALA n 1 24 ASP n 1 25 ILE n 1 26 LYS n 1 27 GLU n 1 28 PRO n 1 29 VAL n 1 30 TYR n 1 31 PRO n 1 32 GLY n 1 33 PRO n 1 34 ALA n 1 35 THR n 1 36 PRO n 1 37 GLU n 1 38 GLN n 1 39 LEU n 1 40 ASN n 1 41 ARG n 1 42 GLY n 1 43 VAL n 1 44 SER n 1 45 PHE n 1 46 ALA n 1 47 GLU n 1 48 GLU n 1 49 ASN n 1 50 GLU n 1 51 SER n 1 52 LEU n 1 53 ASP n 1 54 ASP n 1 55 GLN n 1 56 ASN n 1 57 ILE n 1 58 SER n 1 59 ILE n 1 60 ALA n 1 61 GLY n 1 62 HIS n 1 63 THR n 1 64 PHE n 1 65 ILE n 1 66 ASP n 1 67 ARG n 1 68 PRO n 1 69 ASN n 1 70 TYR n 1 71 GLN n 1 72 PHE n 1 73 THR n 1 74 ASN n 1 75 LEU n 1 76 LYS n 1 77 ALA n 1 78 ALA n 1 79 LYS n 1 80 LYS n 1 81 GLY n 1 82 SER n 1 83 MET n 1 84 VAL n 1 85 TYR n 1 86 PHE n 1 87 LYS n 1 88 VAL n 1 89 GLY n 1 90 ASN n 1 91 GLU n 1 92 THR n 1 93 ARG n 1 94 LYS n 1 95 TYR n 1 96 LYS n 1 97 MET n 1 98 THR n 1 99 SER n 1 100 ILE n 1 101 ARG n 1 102 ASP n 1 103 VAL n 1 104 LYS n 1 105 PRO n 1 106 THR n 1 107 ASP n 1 108 VAL n 1 109 GLU n 1 110 VAL n 1 111 LEU n 1 112 ASP n 1 113 GLU n 1 114 GLN n 1 115 LYS n 1 116 GLY n 1 117 LYS n 1 118 ASP n 1 119 LYS n 1 120 GLN n 1 121 LEU n 1 122 THR n 1 123 LEU n 1 124 ILE n 1 125 THR n 1 126 CYS n 1 127 ASP n 1 128 ASP n 1 129 TYR n 1 130 ASN n 1 131 GLU n 1 132 LYS n 1 133 THR n 1 134 GLY n 1 135 VAL n 1 136 TRP n 1 137 GLU n 1 138 LYS n 1 139 ARG n 1 140 LYS n 1 141 ILE n 1 142 PHE n 1 143 VAL n 1 144 ALA n 1 145 THR n 1 146 GLU n 1 147 VAL n 1 148 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 148 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'srtA, SAOUHSC_02834' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus NCTC 8325' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 93061 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SRTA_STAA8 _struct_ref.pdbx_db_accession Q2FV99 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKKG SMVYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK ; _struct_ref.pdbx_align_begin 60 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6R1V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 148 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2FV99 _struct_ref_seq.db_align_beg 60 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 206 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 148 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6R1V MET A 1 ? UNP Q2FV99 ? ? 'initiating methionine' 1 1 1 6R1V GLU A 109 ? UNP Q2FV99 GLY 167 conflict 109 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JPT non-polymer . '6-(hydroxymethyl)-3-oxidanyl-2-(thiophen-3-ylmethyl)pyran-4-one' ? 'C11 H10 O4 S' 238.260 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 2 1 1 '3D 1H-15N NOESY' 1 isotropic 3 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 4 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 5 1 1 '3D (F1)-15N,13C-filtered 1H-13C NOESY aliphatic' 1 isotropic 8 1 1 '2D (F1,F2)-13C,15N-filtered TOCSY' 1 isotropic 6 1 1 '2D (F1,F2)-13C,15N-filtered NOESY' 1 isotropic 7 1 1 '2D 1H-15N HSQC' 1 isotropic 9 1 1 '3D HNCA' 1 isotropic 10 1 1 '3D CBCA(CO)NH' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.02 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.6 mM [U-13C; U-15N] Sortase A protein, 3.2 mM 3-hydroxy-6-(hydroxymethyl)-2-(thiophen-3-ylmethyl)-4H-pyran-4-one, 20 mM sodium acetate, 50 mM sodium chloride, 10 mM calcium chloride, 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 13C15N_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 6R1V 'simulated annealing' ? 1 6R1V 'torsion angle dynamics' ? 2 # _pdbx_nmr_ensemble.entry_id 6R1V _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6R1V _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 3 'data analysis' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 processing TopSpin ? 'Bruker Biospin' 7 collection VNMR 2.1b Varian 4 'chemical shift assignment' CARA 1.9 'Keller and Wuthrich' 5 'peak picking' UNIO ? 'T. Herrmann, F. Fiorito, J. Volk' 8 'data analysis' UNIO ? 'T. Herrmann, F. Fiorito, J. Volk' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6R1V _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6R1V _struct.title 'Solution structure of sortase A from S. aureus in complex with 2-(aminomethyl)-3-hydroxy-4H-pyran-4-one based prodrug' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6R1V _struct_keywords.text 'Inhibitor, Covalent complex, Prodrug, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 21 ? ASP A 24 ? PRO A 21 ASP A 24 5 ? 4 HELX_P HELX_P2 AA2 THR A 35 ? GLY A 42 ? THR A 35 GLY A 42 1 ? 8 HELX_P HELX_P3 AA3 ASN A 74 ? ALA A 78 ? ASN A 74 ALA A 78 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 126 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id JPT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C7 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 126 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id JPT _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.780 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 16 ? ILE A 20 ? GLY A 16 ILE A 20 AA1 2 ILE A 25 ? TYR A 30 ? ILE A 25 TYR A 30 AA1 3 VAL A 43 ? PHE A 45 ? VAL A 43 PHE A 45 AA1 4 ASN A 56 ? HIS A 62 ? ASN A 56 HIS A 62 AA1 5 GLN A 120 ? TYR A 129 ? GLN A 120 TYR A 129 AA1 6 TRP A 136 ? GLU A 146 ? TRP A 136 GLU A 146 AA1 7 GLU A 91 ? VAL A 103 ? GLU A 91 VAL A 103 AA1 8 VAL A 84 ? VAL A 88 ? VAL A 84 VAL A 88 AA1 9 GLY A 16 ? ILE A 20 ? GLY A 16 ILE A 20 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 18 ? N ILE A 18 O GLU A 27 ? O GLU A 27 AA1 2 3 N TYR A 30 ? N TYR A 30 O VAL A 43 ? O VAL A 43 AA1 3 4 N SER A 44 ? N SER A 44 O ALA A 60 ? O ALA A 60 AA1 4 5 N GLY A 61 ? N GLY A 61 O ILE A 124 ? O ILE A 124 AA1 5 6 N ASP A 127 ? N ASP A 127 O LYS A 138 ? O LYS A 138 AA1 6 7 O ILE A 141 ? O ILE A 141 N ARG A 101 ? N ARG A 101 AA1 7 8 O ARG A 93 ? O ARG A 93 N PHE A 86 ? N PHE A 86 AA1 8 9 O TYR A 85 ? O TYR A 85 N GLU A 19 ? N GLU A 19 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id JPT _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue JPT A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ALA A 60 ? ALA A 60 . ? 1_555 ? 2 AC1 5 ILE A 124 ? ILE A 124 . ? 1_555 ? 3 AC1 5 CYS A 126 ? CYS A 126 . ? 1_555 ? 4 AC1 5 TRP A 136 ? TRP A 136 . ? 1_555 ? 5 AC1 5 ARG A 139 ? ARG A 139 . ? 1_555 ? # _database_PDB_matrix.entry_id 6R1V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6R1V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 CYS 126 126 126 CYS CYS A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 TRP 136 136 136 TRP TRP A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 LYS 148 148 148 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id JPT _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id JPT _pdbx_nonpoly_scheme.auth_mon_id UNK _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 8590 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-22 2 'Structure model' 1 1 2020-02-26 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' 8 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Sortase A protein' 1.6 ? mM '[U-13C; U-15N]' 1 '3-hydroxy-6-(hydroxymethyl)-2-(thiophen-3-ylmethyl)-4H-pyran-4-one' 3.2 ? mM 'natural abundance' 1 'sodium acetate' 20 ? mM 'natural abundance' 1 'sodium chloride' 50 ? mM 'natural abundance' 1 'calcium chloride' 10 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.54 2 1 OD2 A ASP 118 ? ? HZ3 A LYS 119 ? ? 1.55 3 3 OD1 A ASP 118 ? ? HZ1 A LYS 148 ? ? 1.56 4 7 HH21 A ARG 139 ? ? O2 A JPT 201 ? ? 1.33 5 7 OE2 A GLU 19 ? ? HZ1 A LYS 87 ? ? 1.59 6 8 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.35 7 8 OE1 A GLU 19 ? ? HZ1 A LYS 26 ? ? 1.58 8 10 OD1 A ASP 118 ? ? HZ2 A LYS 119 ? ? 1.58 9 11 HD3 A LYS 140 ? ? HE1 A PHE 142 ? ? 1.30 10 11 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.51 11 11 OD1 A ASP 118 ? ? HZ2 A LYS 119 ? ? 1.59 12 12 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.34 13 12 OD1 A ASP 22 ? ? HZ3 A LYS 79 ? ? 1.59 14 13 HZ1 A LYS 11 ? ? OE1 A GLU 48 ? ? 1.59 15 14 HB A VAL 43 ? ? HG3 A GLN 71 ? ? 1.28 16 14 HZ1 A LYS 9 ? ? OE2 A GLU 48 ? ? 1.56 17 15 HH21 A ARG 139 ? ? O2 A JPT 201 ? ? 1.37 18 15 HZ3 A LYS 104 ? ? OD1 A ASP 107 ? ? 1.60 19 16 OD1 A ASP 22 ? ? HZ1 A LYS 79 ? ? 1.60 20 17 H A ASP 128 ? ? HE3 A TRP 136 ? ? 1.19 21 17 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.34 22 17 HZ2 A LYS 94 ? ? OE2 A GLU 146 ? ? 1.59 23 17 OD2 A ASP 107 ? ? HH21 A ARG 139 ? ? 1.59 24 18 HH21 A ARG 139 ? ? O2 A JPT 201 ? ? 1.37 25 19 H A ASP 128 ? ? HE3 A TRP 136 ? ? 1.29 26 19 OE2 A GLU 19 ? ? HZ1 A LYS 26 ? ? 1.57 27 20 HH11 A ARG 139 ? ? O2 A JPT 201 ? ? 1.37 28 20 OD2 A ASP 118 ? ? HZ2 A LYS 119 ? ? 1.52 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 4 ? ? 54.60 94.69 2 1 PRO A 33 ? ? -87.58 31.75 3 1 TYR A 70 ? ? -119.33 -161.16 4 1 GLN A 71 ? ? -60.21 -77.76 5 1 MET A 83 ? ? 50.56 85.34 6 1 ASN A 90 ? ? -169.11 -38.59 7 1 VAL A 103 ? ? -126.41 -169.16 8 1 GLN A 114 ? ? -86.30 47.88 9 1 ASP A 118 ? ? -89.62 -157.32 10 1 ASP A 128 ? ? 70.14 98.97 11 2 ALA A 34 ? ? 65.15 75.44 12 2 ASN A 69 ? ? -155.64 84.49 13 2 TYR A 70 ? ? -108.56 -168.87 14 2 PHE A 72 ? ? -114.41 78.81 15 2 ASN A 74 ? ? -87.17 30.62 16 2 LYS A 79 ? ? -111.54 -169.08 17 2 MET A 83 ? ? 50.17 76.01 18 2 LYS A 117 ? ? -59.84 176.64 19 2 ASP A 128 ? ? 62.21 82.28 20 3 GLN A 2 ? ? -69.84 -170.25 21 3 LYS A 26 ? ? -143.57 29.77 22 3 PRO A 33 ? ? -82.44 30.63 23 3 ALA A 34 ? ? 61.85 82.90 24 3 GLN A 71 ? ? -43.55 -77.20 25 3 PHE A 72 ? ? -106.20 79.66 26 3 MET A 83 ? ? 49.70 78.01 27 3 ASP A 118 ? ? -94.56 -154.74 28 3 THR A 133 ? ? -141.20 -34.81 29 3 GLU A 137 ? ? -77.60 -74.72 30 4 PRO A 33 ? ? -79.19 30.99 31 4 TYR A 70 ? ? -126.76 -160.25 32 4 GLN A 71 ? ? -59.44 -78.61 33 4 PHE A 72 ? ? -91.09 31.66 34 4 MET A 83 ? ? 57.01 90.43 35 4 ASP A 118 ? ? -95.81 -158.62 36 5 LYS A 4 ? ? 53.94 93.77 37 5 PRO A 33 ? ? -88.18 30.02 38 5 ASN A 49 ? ? -85.47 31.05 39 5 TYR A 70 ? ? -99.12 -157.79 40 5 GLN A 71 ? ? -43.57 -75.47 41 5 PHE A 72 ? ? -100.03 77.17 42 5 THR A 73 ? ? -137.84 -52.03 43 5 MET A 83 ? ? 53.91 83.30 44 5 ASN A 90 ? ? -148.18 11.07 45 5 ARG A 101 ? ? -165.23 -166.58 46 5 ASP A 118 ? ? -85.13 -156.25 47 5 ASP A 127 ? ? -110.54 76.73 48 5 ASP A 128 ? ? -162.88 -80.38 49 5 TYR A 129 ? ? 61.03 86.67 50 6 LYS A 26 ? ? -156.41 45.73 51 6 PRO A 33 ? ? -76.66 30.24 52 6 THR A 63 ? ? 69.09 122.46 53 6 ASN A 69 ? ? -153.19 47.44 54 6 GLN A 71 ? ? -34.69 -74.87 55 6 THR A 73 ? ? -150.40 -41.28 56 6 ASN A 90 ? ? -137.35 -37.46 57 6 ASP A 118 ? ? -85.75 -158.51 58 7 LYS A 4 ? ? 43.30 79.76 59 7 ASN A 69 ? ? -160.58 89.07 60 7 TYR A 70 ? ? -130.69 -151.83 61 7 GLN A 71 ? ? -55.49 -84.16 62 7 MET A 83 ? ? 57.52 89.53 63 7 LYS A 119 ? ? -46.86 106.31 64 8 LYS A 4 ? ? 51.22 91.93 65 8 LYS A 26 ? ? -141.02 42.70 66 8 ALA A 34 ? ? 64.96 89.74 67 8 HIS A 62 ? ? -111.81 76.23 68 8 GLN A 71 ? ? 16.49 -92.18 69 8 THR A 73 ? ? -145.49 -39.34 70 8 MET A 83 ? ? 56.52 88.64 71 8 ASP A 118 ? ? -83.16 -152.58 72 8 LYS A 138 ? ? -69.97 88.53 73 9 GLN A 2 ? ? 70.60 -61.03 74 9 LYS A 4 ? ? 54.22 87.55 75 9 PRO A 33 ? ? -87.69 33.55 76 9 GLN A 71 ? ? 41.44 -107.59 77 9 THR A 73 ? ? -120.71 -53.82 78 9 LYS A 79 ? ? -163.50 -169.78 79 9 MET A 83 ? ? 53.33 89.85 80 9 ASN A 90 ? ? -172.86 -28.53 81 9 ASP A 112 ? ? -79.25 -154.91 82 9 GLU A 113 ? ? -65.52 92.72 83 9 ASP A 128 ? ? -78.95 -79.81 84 9 TYR A 129 ? ? 62.48 88.78 85 10 GLN A 2 ? ? 72.66 -65.03 86 10 LYS A 9 ? ? -92.07 36.83 87 10 ALA A 34 ? ? 61.71 68.82 88 10 ASN A 69 ? ? -154.26 82.30 89 10 TYR A 70 ? ? -118.37 -164.20 90 10 GLN A 71 ? ? -48.96 -75.09 91 10 PHE A 72 ? ? -103.21 68.48 92 10 MET A 83 ? ? 54.36 83.84 93 10 ASN A 90 ? ? -152.74 12.17 94 10 ARG A 101 ? ? -168.99 -159.81 95 10 PRO A 105 ? ? -65.08 11.75 96 10 GLN A 114 ? ? 52.13 119.70 97 10 ASP A 118 ? ? -93.98 -158.14 98 11 LYS A 26 ? ? -150.19 81.91 99 11 ALA A 34 ? ? 61.55 74.67 100 11 LYS A 79 ? ? -101.58 -164.41 101 11 MET A 83 ? ? 44.66 88.38 102 11 THR A 133 ? ? -149.81 -26.48 103 12 LYS A 4 ? ? 45.97 93.53 104 12 GLN A 71 ? ? -164.21 -154.54 105 12 PHE A 72 ? ? -74.22 26.89 106 12 LYS A 79 ? ? -111.12 -169.37 107 12 MET A 83 ? ? 51.01 83.99 108 12 ASP A 118 ? ? -78.76 -155.80 109 12 ASP A 128 ? ? 57.40 83.95 110 13 SER A 12 ? ? -169.03 -29.07 111 13 GLU A 48 ? ? -69.28 68.32 112 13 ASN A 69 ? ? -153.41 83.66 113 13 THR A 73 ? ? -164.59 -40.85 114 13 MET A 83 ? ? 56.23 87.13 115 13 PRO A 105 ? ? -72.33 20.94 116 13 THR A 106 ? ? -156.47 8.87 117 13 LYS A 115 ? ? -115.04 -165.60 118 13 ASP A 118 ? ? -87.51 -153.85 119 13 ASP A 128 ? ? -153.90 -51.26 120 13 TYR A 129 ? ? 56.50 83.52 121 14 ALA A 3 ? ? -178.81 106.14 122 14 LYS A 26 ? ? -156.14 57.28 123 14 GLN A 71 ? ? -47.29 -81.21 124 14 ARG A 101 ? ? -170.74 -176.62 125 14 LYS A 115 ? ? -84.19 -152.21 126 14 ASP A 118 ? ? -87.36 -157.45 127 14 ASP A 128 ? ? -178.59 -82.35 128 14 TYR A 129 ? ? 58.58 77.48 129 15 ALA A 3 ? ? 66.00 98.94 130 15 LYS A 4 ? ? 54.66 84.73 131 15 LYS A 26 ? ? -155.26 42.18 132 15 PRO A 33 ? ? -74.46 38.02 133 15 THR A 63 ? ? 73.01 126.92 134 15 THR A 73 ? ? -156.49 -45.43 135 15 MET A 83 ? ? 54.31 85.75 136 15 ARG A 101 ? ? -164.62 -169.64 137 15 ASP A 112 ? ? -99.84 -159.15 138 15 ASP A 118 ? ? -104.54 -149.72 139 15 ASP A 128 ? ? -176.26 95.23 140 16 LYS A 26 ? ? -159.86 79.11 141 16 GLN A 71 ? ? -49.63 -72.37 142 16 MET A 83 ? ? 53.93 82.93 143 16 GLU A 113 ? ? -66.61 84.80 144 16 GLN A 114 ? ? -87.45 37.78 145 16 ASP A 118 ? ? -104.60 -157.78 146 17 PRO A 33 ? ? -88.01 39.86 147 17 ASP A 66 ? ? -87.77 40.54 148 17 ARG A 67 ? ? -166.21 88.76 149 17 ASN A 69 ? ? -154.73 83.58 150 17 GLN A 71 ? ? -24.10 -75.73 151 17 THR A 73 ? ? -134.54 -49.74 152 17 ASN A 74 ? ? -87.75 32.74 153 17 MET A 83 ? ? 47.68 91.63 154 17 ASP A 128 ? ? -168.89 85.72 155 18 LYS A 11 ? ? -90.63 31.19 156 18 LYS A 26 ? ? -153.60 84.71 157 18 GLU A 47 ? ? -119.59 -167.58 158 18 ASP A 66 ? ? -159.93 22.61 159 18 GLN A 71 ? ? -41.66 -79.05 160 18 THR A 73 ? ? -147.62 -50.66 161 18 MET A 83 ? ? 55.15 90.57 162 18 LYS A 115 ? ? -88.98 -154.16 163 18 ASP A 118 ? ? -90.98 -149.40 164 18 ASN A 130 ? ? 49.40 93.71 165 18 THR A 133 ? ? -159.41 -3.26 166 19 ALA A 3 ? ? 62.03 105.02 167 19 LYS A 4 ? ? 59.45 97.52 168 19 LYS A 26 ? ? -151.27 54.24 169 19 PRO A 33 ? ? -93.73 34.52 170 19 ASN A 69 ? ? -161.77 86.29 171 19 TYR A 70 ? ? -113.16 -150.29 172 19 THR A 73 ? ? -154.91 -64.04 173 19 ARG A 101 ? ? -170.42 -175.06 174 19 GLU A 113 ? ? -18.38 109.47 175 19 ASP A 118 ? ? -89.07 -148.44 176 19 LYS A 119 ? ? -56.52 109.01 177 19 ASP A 128 ? ? 166.94 99.50 178 20 ALA A 34 ? ? 61.83 75.57 179 20 HIS A 62 ? ? -150.57 38.02 180 20 THR A 63 ? ? 56.03 -158.75 181 20 ILE A 65 ? ? -128.27 -53.68 182 20 ASN A 69 ? ? -154.78 82.31 183 20 GLN A 71 ? ? -38.24 -71.07 184 20 PHE A 72 ? ? -105.66 76.04 185 20 MET A 83 ? ? 53.66 86.83 186 20 LEU A 111 ? ? -97.41 34.54 187 20 GLN A 114 ? ? -82.21 45.33 188 20 ASP A 118 ? ? -112.73 -163.58 189 20 ASP A 128 ? ? 52.26 83.34 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '6-(hydroxymethyl)-3-oxidanyl-2-(thiophen-3-ylmethyl)pyran-4-one' _pdbx_entity_nonpoly.comp_id JPT # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #