HEADER VIRUS LIKE PARTICLE 15-MAR-19 6R22 TITLE THE STRUCTURE OF A TY3 RETROTRANSPOSON CAPSID N-TERMINAL DOMAIN DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSON TY3-I GAG-POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAG3-POL3,TRANSPOSON TY3-2 TYA-TYB POLYPROTEIN; COMPND 5 EC: 3.4.23.-,2.7.7.49,2.7.7.7,3.1.26.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: D336I MUTATION IN THE ACTIVE CENTER OF THE TY3 COMPND 9 PROTEASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: TY3B-I, YILWTY3-1 POL, YIL082W-A; SOURCE 8 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 9 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: YVB1680 STRAIN - BY4741 KILLER MINUS, TY3 SOURCE 12 NULL; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PJK776 KEYWDS TY3, RETROTRANSPOSON, RETROVIRUS, CAPSID, GAG POLYPROTEIN, CAPSID- KEYWDS 2 NTD, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR S.O.DODONOVA,S.PRINZ,V.BILANCHONE,S.SANDMEYER,J.A.G.BRIGGS REVDAT 3 06-NOV-19 6R22 1 REMARK REVDAT 2 22-MAY-19 6R22 1 JRNL REVDAT 1 08-MAY-19 6R22 0 JRNL AUTH S.O.DODONOVA,S.PRINZ,V.BILANCHONE,S.SANDMEYER,J.A.G.BRIGGS JRNL TITL STRUCTURE OF THE TY3/GYPSY RETROTRANSPOSON CAPSID AND THE JRNL TITL 2 EVOLUTION OF RETROVIRUSES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 10048 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31036670 JRNL DOI 10.1073/PNAS.1900931116 REMARK 2 REMARK 2 RESOLUTION. 5.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN2, EPU, CTFFIND, MDFF, PHENIX, REMARK 3 RELION, RELION, RELION, TOM TOOLBOX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.500 REMARK 3 NUMBER OF PARTICLES : 74160 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6R22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1200012644. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TY3 CAPSID N-TERMINAL DOMAIN REMARK 245 DIMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : THE SAMPLE WAS APPLIED ONTO REMARK 245 GLOW-DISCHARGED C-FLAT REMARK 245 (PROTOCHIPS INC.) HOLEY CARBON REMARK 245 GRIDS. THE GRIDS WERE BLOTTED REMARK 245 FROM THE BACK SIDE FOR 11 REMARK 245 SECONDS AT ROOM TEMPERATURE IN REMARK 245 A CHAMBER AT 85% HUMIDITY AND REMARK 245 PLUNGE-FROZEN INTO LIQUID REMARK 245 ETHANE USING A MANUAL PLUNGER. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : THE 4 NON-SYMMETRY RELATED REMARK 245 COPIES OF THE TY3 CAPSID-NTD FROM THE COMPLETE CAPSID SHELL REMARK 245 STRUCTURE WERE ALIGNED AND AVERAGED TO GENERATE A HIGHER REMARK 245 RESOLUTION 5.5 A STRUCTURE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : CRYO-GRIDS CONTAINING REMARK 245 PURIFIED PR- TY3 PARTICLES WERE IMAGED IN A TITAN KRIOS ELECTRON REMARK 245 MICROSCOPE EQUIPPED WITH A FALCON II DIRECT ELECTRON DETECTOR, REMARK 245 OPERATED AT 300 KV. IMAGES WERE COLLECTED WITH A NOMINAL REMARK 245 MAGNIFICATION OF 75000, GIVING A PIXEL SIZE OF 1.08 A. IMAGES REMARK 245 WERE COLLECTED IN INTEGRATING MODE WITH A TOTAL ELECTRON DOSE OF REMARK 245 20 E/A2. THE RANGE OF APPLIED DEFOCUS VALUES WAS BETWEEN -1.0 UM REMARK 245 AND -3.5 UM. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 MET A 4 REMARK 465 ASP A 5 REMARK 465 GLN A 6 REMARK 465 ILE A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 ASN A 12 REMARK 465 TYR A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 CYS A 20 REMARK 465 LEU A 21 REMARK 465 PRO A 22 REMARK 465 ASN A 23 REMARK 465 PHE A 24 REMARK 465 PRO A 25 REMARK 465 ILE A 26 REMARK 465 GLN A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 THR A 31 REMARK 465 PHE A 32 REMARK 465 ARG A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 ASN A 36 REMARK 465 ASN A 111 REMARK 465 LYS A 112 REMARK 465 ILE A 113 REMARK 465 PHE A 114 REMARK 465 ASN A 115 REMARK 465 ALA A 116 REMARK 465 ILE A 117 REMARK 465 THR A 118 REMARK 465 GLN A 119 REMARK 465 LEU A 120 REMARK 465 SER A 121 REMARK 465 GLU A 122 REMARK 465 ALA A 123 REMARK 465 LYS A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 126 REMARK 465 ILE A 127 REMARK 465 GLU A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 ASN A 131 REMARK 465 GLN A 132 REMARK 465 ARG A 133 REMARK 465 PHE A 134 REMARK 465 ARG A 135 REMARK 465 LYS A 136 REMARK 465 ILE A 137 REMARK 465 TRP A 138 REMARK 465 ASP A 139 REMARK 465 ARG A 140 REMARK 465 MET A 141 REMARK 465 PRO A 142 REMARK 465 PRO A 143 REMARK 465 ASP A 144 REMARK 465 PHE A 145 REMARK 465 MET A 146 REMARK 465 THR A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 ALA A 150 REMARK 465 ALA A 151 REMARK 465 ILE A 152 REMARK 465 MET A 153 REMARK 465 THR A 154 REMARK 465 TYR A 155 REMARK 465 THR A 156 REMARK 465 ARG A 157 REMARK 465 LEU A 158 REMARK 465 LEU A 159 REMARK 465 THR A 160 REMARK 465 LYS A 161 REMARK 465 GLU A 162 REMARK 465 THR A 163 REMARK 465 TYR A 164 REMARK 465 ASN A 165 REMARK 465 ILE A 166 REMARK 465 VAL A 167 REMARK 465 ARG A 168 REMARK 465 MET A 169 REMARK 465 HIS A 170 REMARK 465 LYS A 171 REMARK 465 PRO A 172 REMARK 465 GLU A 173 REMARK 465 THR A 174 REMARK 465 LEU A 175 REMARK 465 LYS A 176 REMARK 465 ASP A 177 REMARK 465 ALA A 178 REMARK 465 MET A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 ALA A 182 REMARK 465 TYR A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 LEU A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 ARG A 191 REMARK 465 PHE A 192 REMARK 465 PHE A 193 REMARK 465 PRO A 194 REMARK 465 GLY A 195 REMARK 465 PHE A 196 REMARK 465 GLU A 197 REMARK 465 LEU A 198 REMARK 465 ASP A 199 REMARK 465 ALA A 200 REMARK 465 ASP A 201 REMARK 465 GLY A 202 REMARK 465 ASP A 203 REMARK 465 THR A 204 REMARK 465 ILE A 205 REMARK 465 ILE A 206 REMARK 465 GLY A 207 REMARK 465 ALA A 208 REMARK 465 THR A 209 REMARK 465 THR A 210 REMARK 465 HIS A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 GLU A 214 REMARK 465 GLU A 215 REMARK 465 TYR A 216 REMARK 465 ASP A 217 REMARK 465 SER A 218 REMARK 465 ASP A 219 REMARK 465 TYR A 220 REMARK 465 ASP A 221 REMARK 465 SER A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 ASN A 225 REMARK 465 LEU A 226 REMARK 465 THR A 227 REMARK 465 GLN A 228 REMARK 465 ASN A 229 REMARK 465 ARG A 230 REMARK 465 TYR A 231 REMARK 465 VAL A 232 REMARK 465 HIS A 233 REMARK 465 THR A 234 REMARK 465 VAL A 235 REMARK 465 ARG A 236 REMARK 465 THR A 237 REMARK 465 ARG A 238 REMARK 465 ARG A 239 REMARK 465 SER A 240 REMARK 465 TYR A 241 REMARK 465 ASN A 242 REMARK 465 LYS A 243 REMARK 465 PRO A 244 REMARK 465 MET A 245 REMARK 465 SER A 246 REMARK 465 ASN A 247 REMARK 465 HIS A 248 REMARK 465 ARG A 249 REMARK 465 ASN A 250 REMARK 465 ARG A 251 REMARK 465 ARG A 252 REMARK 465 ASN A 253 REMARK 465 ASN A 254 REMARK 465 ASN A 255 REMARK 465 ALA A 256 REMARK 465 SER A 257 REMARK 465 ARG A 258 REMARK 465 GLU A 259 REMARK 465 GLU A 260 REMARK 465 CYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 ASN A 264 REMARK 465 ARG A 265 REMARK 465 LEU A 266 REMARK 465 CYS A 267 REMARK 465 PHE A 268 REMARK 465 TYR A 269 REMARK 465 CYS A 270 REMARK 465 LYS A 271 REMARK 465 LYS A 272 REMARK 465 GLU A 273 REMARK 465 GLY A 274 REMARK 465 HIS A 275 REMARK 465 ARG A 276 REMARK 465 LEU A 277 REMARK 465 ASN A 278 REMARK 465 GLU A 279 REMARK 465 CYS A 280 REMARK 465 ARG A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 LYS A 284 REMARK 465 ALA A 285 REMARK 465 VAL A 286 REMARK 465 LEU A 287 REMARK 465 THR A 288 REMARK 465 ASP A 289 REMARK 465 LEU A 290 REMARK 465 GLU A 291 REMARK 465 LEU A 292 REMARK 465 GLU A 293 REMARK 465 SER A 294 REMARK 465 LYS A 295 REMARK 465 ASP A 296 REMARK 465 GLN A 297 REMARK 465 GLN A 298 REMARK 465 THR A 299 REMARK 465 LEU A 300 REMARK 465 PHE A 301 REMARK 465 ILE A 302 REMARK 465 LYS A 303 REMARK 465 THR A 304 REMARK 465 LEU A 305 REMARK 465 PRO A 306 REMARK 465 ILE A 307 REMARK 465 VAL A 308 REMARK 465 HIS A 309 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 MET B 4 REMARK 465 ASP B 5 REMARK 465 GLN B 6 REMARK 465 ILE B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 ASN B 12 REMARK 465 TYR B 13 REMARK 465 PRO B 14 REMARK 465 LYS B 15 REMARK 465 LEU B 16 REMARK 465 PRO B 17 REMARK 465 VAL B 18 REMARK 465 GLU B 19 REMARK 465 CYS B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 ASN B 23 REMARK 465 PHE B 24 REMARK 465 PRO B 25 REMARK 465 ILE B 26 REMARK 465 GLN B 27 REMARK 465 PRO B 28 REMARK 465 SER B 29 REMARK 465 LEU B 30 REMARK 465 THR B 31 REMARK 465 PHE B 32 REMARK 465 ARG B 33 REMARK 465 GLY B 34 REMARK 465 ARG B 35 REMARK 465 ASN B 36 REMARK 465 ASN B 111 REMARK 465 LYS B 112 REMARK 465 ILE B 113 REMARK 465 PHE B 114 REMARK 465 ASN B 115 REMARK 465 ALA B 116 REMARK 465 ILE B 117 REMARK 465 THR B 118 REMARK 465 GLN B 119 REMARK 465 LEU B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 ALA B 123 REMARK 465 LYS B 124 REMARK 465 LEU B 125 REMARK 465 GLY B 126 REMARK 465 ILE B 127 REMARK 465 GLU B 128 REMARK 465 ARG B 129 REMARK 465 LEU B 130 REMARK 465 ASN B 131 REMARK 465 GLN B 132 REMARK 465 ARG B 133 REMARK 465 PHE B 134 REMARK 465 ARG B 135 REMARK 465 LYS B 136 REMARK 465 ILE B 137 REMARK 465 TRP B 138 REMARK 465 ASP B 139 REMARK 465 ARG B 140 REMARK 465 MET B 141 REMARK 465 PRO B 142 REMARK 465 PRO B 143 REMARK 465 ASP B 144 REMARK 465 PHE B 145 REMARK 465 MET B 146 REMARK 465 THR B 147 REMARK 465 GLU B 148 REMARK 465 LYS B 149 REMARK 465 ALA B 150 REMARK 465 ALA B 151 REMARK 465 ILE B 152 REMARK 465 MET B 153 REMARK 465 THR B 154 REMARK 465 TYR B 155 REMARK 465 THR B 156 REMARK 465 ARG B 157 REMARK 465 LEU B 158 REMARK 465 LEU B 159 REMARK 465 THR B 160 REMARK 465 LYS B 161 REMARK 465 GLU B 162 REMARK 465 THR B 163 REMARK 465 TYR B 164 REMARK 465 ASN B 165 REMARK 465 ILE B 166 REMARK 465 VAL B 167 REMARK 465 ARG B 168 REMARK 465 MET B 169 REMARK 465 HIS B 170 REMARK 465 LYS B 171 REMARK 465 PRO B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 LEU B 175 REMARK 465 LYS B 176 REMARK 465 ASP B 177 REMARK 465 ALA B 178 REMARK 465 MET B 179 REMARK 465 GLU B 180 REMARK 465 GLU B 181 REMARK 465 ALA B 182 REMARK 465 TYR B 183 REMARK 465 GLN B 184 REMARK 465 THR B 185 REMARK 465 THR B 186 REMARK 465 ALA B 187 REMARK 465 LEU B 188 REMARK 465 THR B 189 REMARK 465 GLU B 190 REMARK 465 ARG B 191 REMARK 465 PHE B 192 REMARK 465 PHE B 193 REMARK 465 PRO B 194 REMARK 465 GLY B 195 REMARK 465 PHE B 196 REMARK 465 GLU B 197 REMARK 465 LEU B 198 REMARK 465 ASP B 199 REMARK 465 ALA B 200 REMARK 465 ASP B 201 REMARK 465 GLY B 202 REMARK 465 ASP B 203 REMARK 465 THR B 204 REMARK 465 ILE B 205 REMARK 465 ILE B 206 REMARK 465 GLY B 207 REMARK 465 ALA B 208 REMARK 465 THR B 209 REMARK 465 THR B 210 REMARK 465 HIS B 211 REMARK 465 LEU B 212 REMARK 465 GLN B 213 REMARK 465 GLU B 214 REMARK 465 GLU B 215 REMARK 465 TYR B 216 REMARK 465 ASP B 217 REMARK 465 SER B 218 REMARK 465 ASP B 219 REMARK 465 TYR B 220 REMARK 465 ASP B 221 REMARK 465 SER B 222 REMARK 465 GLU B 223 REMARK 465 ASP B 224 REMARK 465 ASN B 225 REMARK 465 LEU B 226 REMARK 465 THR B 227 REMARK 465 GLN B 228 REMARK 465 ASN B 229 REMARK 465 ARG B 230 REMARK 465 TYR B 231 REMARK 465 VAL B 232 REMARK 465 HIS B 233 REMARK 465 THR B 234 REMARK 465 VAL B 235 REMARK 465 ARG B 236 REMARK 465 THR B 237 REMARK 465 ARG B 238 REMARK 465 ARG B 239 REMARK 465 SER B 240 REMARK 465 TYR B 241 REMARK 465 ASN B 242 REMARK 465 LYS B 243 REMARK 465 PRO B 244 REMARK 465 MET B 245 REMARK 465 SER B 246 REMARK 465 ASN B 247 REMARK 465 HIS B 248 REMARK 465 ARG B 249 REMARK 465 ASN B 250 REMARK 465 ARG B 251 REMARK 465 ARG B 252 REMARK 465 ASN B 253 REMARK 465 ASN B 254 REMARK 465 ASN B 255 REMARK 465 ALA B 256 REMARK 465 SER B 257 REMARK 465 ARG B 258 REMARK 465 GLU B 259 REMARK 465 GLU B 260 REMARK 465 CYS B 261 REMARK 465 ILE B 262 REMARK 465 LYS B 263 REMARK 465 ASN B 264 REMARK 465 ARG B 265 REMARK 465 LEU B 266 REMARK 465 CYS B 267 REMARK 465 PHE B 268 REMARK 465 TYR B 269 REMARK 465 CYS B 270 REMARK 465 LYS B 271 REMARK 465 LYS B 272 REMARK 465 GLU B 273 REMARK 465 GLY B 274 REMARK 465 HIS B 275 REMARK 465 ARG B 276 REMARK 465 LEU B 277 REMARK 465 ASN B 278 REMARK 465 GLU B 279 REMARK 465 CYS B 280 REMARK 465 ARG B 281 REMARK 465 ALA B 282 REMARK 465 ARG B 283 REMARK 465 LYS B 284 REMARK 465 ALA B 285 REMARK 465 VAL B 286 REMARK 465 LEU B 287 REMARK 465 THR B 288 REMARK 465 ASP B 289 REMARK 465 LEU B 290 REMARK 465 GLU B 291 REMARK 465 LEU B 292 REMARK 465 GLU B 293 REMARK 465 SER B 294 REMARK 465 LYS B 295 REMARK 465 ASP B 296 REMARK 465 GLN B 297 REMARK 465 GLN B 298 REMARK 465 THR B 299 REMARK 465 LEU B 300 REMARK 465 PHE B 301 REMARK 465 ILE B 302 REMARK 465 LYS B 303 REMARK 465 THR B 304 REMARK 465 LEU B 305 REMARK 465 PRO B 306 REMARK 465 ILE B 307 REMARK 465 VAL B 308 REMARK 465 HIS B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 109 -62.60 -93.03 REMARK 500 ASP B 109 -62.61 -93.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-4707 RELATED DB: EMDB REMARK 900 THE STRUCTURE OF A TY3 RETROTRANSPOSON CAPSID N-TERMINAL DOMAIN REMARK 900 DIMER DBREF 6R22 A 1 309 UNP Q7LHG5 YI31B_YEAST 1 309 DBREF 6R22 B 1 309 UNP Q7LHG5 YI31B_YEAST 1 309 SEQRES 1 A 309 MET SER PHE MET ASP GLN ILE PRO GLY GLY GLY ASN TYR SEQRES 2 A 309 PRO LYS LEU PRO VAL GLU CYS LEU PRO ASN PHE PRO ILE SEQRES 3 A 309 GLN PRO SER LEU THR PHE ARG GLY ARG ASN ASP SER HIS SEQRES 4 A 309 LYS LEU LYS ASN PHE ILE SER GLU ILE MET LEU ASN MET SEQRES 5 A 309 SER MET ILE SER TRP PRO ASN ASP ALA SER ARG ILE VAL SEQRES 6 A 309 TYR CYS ARG ARG HIS LEU LEU ASN PRO ALA ALA GLN TRP SEQRES 7 A 309 ALA ASN ASP PHE VAL GLN GLU GLN GLY ILE LEU GLU ILE SEQRES 8 A 309 THR PHE ASP THR PHE ILE GLN GLY LEU TYR GLN HIS PHE SEQRES 9 A 309 TYR LYS PRO PRO ASP ILE ASN LYS ILE PHE ASN ALA ILE SEQRES 10 A 309 THR GLN LEU SER GLU ALA LYS LEU GLY ILE GLU ARG LEU SEQRES 11 A 309 ASN GLN ARG PHE ARG LYS ILE TRP ASP ARG MET PRO PRO SEQRES 12 A 309 ASP PHE MET THR GLU LYS ALA ALA ILE MET THR TYR THR SEQRES 13 A 309 ARG LEU LEU THR LYS GLU THR TYR ASN ILE VAL ARG MET SEQRES 14 A 309 HIS LYS PRO GLU THR LEU LYS ASP ALA MET GLU GLU ALA SEQRES 15 A 309 TYR GLN THR THR ALA LEU THR GLU ARG PHE PHE PRO GLY SEQRES 16 A 309 PHE GLU LEU ASP ALA ASP GLY ASP THR ILE ILE GLY ALA SEQRES 17 A 309 THR THR HIS LEU GLN GLU GLU TYR ASP SER ASP TYR ASP SEQRES 18 A 309 SER GLU ASP ASN LEU THR GLN ASN ARG TYR VAL HIS THR SEQRES 19 A 309 VAL ARG THR ARG ARG SER TYR ASN LYS PRO MET SER ASN SEQRES 20 A 309 HIS ARG ASN ARG ARG ASN ASN ASN ALA SER ARG GLU GLU SEQRES 21 A 309 CYS ILE LYS ASN ARG LEU CYS PHE TYR CYS LYS LYS GLU SEQRES 22 A 309 GLY HIS ARG LEU ASN GLU CYS ARG ALA ARG LYS ALA VAL SEQRES 23 A 309 LEU THR ASP LEU GLU LEU GLU SER LYS ASP GLN GLN THR SEQRES 24 A 309 LEU PHE ILE LYS THR LEU PRO ILE VAL HIS SEQRES 1 B 309 MET SER PHE MET ASP GLN ILE PRO GLY GLY GLY ASN TYR SEQRES 2 B 309 PRO LYS LEU PRO VAL GLU CYS LEU PRO ASN PHE PRO ILE SEQRES 3 B 309 GLN PRO SER LEU THR PHE ARG GLY ARG ASN ASP SER HIS SEQRES 4 B 309 LYS LEU LYS ASN PHE ILE SER GLU ILE MET LEU ASN MET SEQRES 5 B 309 SER MET ILE SER TRP PRO ASN ASP ALA SER ARG ILE VAL SEQRES 6 B 309 TYR CYS ARG ARG HIS LEU LEU ASN PRO ALA ALA GLN TRP SEQRES 7 B 309 ALA ASN ASP PHE VAL GLN GLU GLN GLY ILE LEU GLU ILE SEQRES 8 B 309 THR PHE ASP THR PHE ILE GLN GLY LEU TYR GLN HIS PHE SEQRES 9 B 309 TYR LYS PRO PRO ASP ILE ASN LYS ILE PHE ASN ALA ILE SEQRES 10 B 309 THR GLN LEU SER GLU ALA LYS LEU GLY ILE GLU ARG LEU SEQRES 11 B 309 ASN GLN ARG PHE ARG LYS ILE TRP ASP ARG MET PRO PRO SEQRES 12 B 309 ASP PHE MET THR GLU LYS ALA ALA ILE MET THR TYR THR SEQRES 13 B 309 ARG LEU LEU THR LYS GLU THR TYR ASN ILE VAL ARG MET SEQRES 14 B 309 HIS LYS PRO GLU THR LEU LYS ASP ALA MET GLU GLU ALA SEQRES 15 B 309 TYR GLN THR THR ALA LEU THR GLU ARG PHE PHE PRO GLY SEQRES 16 B 309 PHE GLU LEU ASP ALA ASP GLY ASP THR ILE ILE GLY ALA SEQRES 17 B 309 THR THR HIS LEU GLN GLU GLU TYR ASP SER ASP TYR ASP SEQRES 18 B 309 SER GLU ASP ASN LEU THR GLN ASN ARG TYR VAL HIS THR SEQRES 19 B 309 VAL ARG THR ARG ARG SER TYR ASN LYS PRO MET SER ASN SEQRES 20 B 309 HIS ARG ASN ARG ARG ASN ASN ASN ALA SER ARG GLU GLU SEQRES 21 B 309 CYS ILE LYS ASN ARG LEU CYS PHE TYR CYS LYS LYS GLU SEQRES 22 B 309 GLY HIS ARG LEU ASN GLU CYS ARG ALA ARG LYS ALA VAL SEQRES 23 B 309 LEU THR ASP LEU GLU LEU GLU SER LYS ASP GLN GLN THR SEQRES 24 B 309 LEU PHE ILE LYS THR LEU PRO ILE VAL HIS HELIX 1 AA1 ASP A 37 ILE A 55 1 19 HELIX 2 AA2 ASP A 60 ARG A 68 1 9 HELIX 3 AA3 LEU A 72 GLN A 86 1 15 HELIX 4 AA4 THR A 92 HIS A 103 1 12 HELIX 5 AA5 SER B 38 ILE B 55 1 18 HELIX 6 AA6 ASP B 60 ARG B 68 1 9 HELIX 7 AA7 LEU B 72 GLN B 86 1 15 HELIX 8 AA8 THR B 92 HIS B 103 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000