HEADER IMMUNE SYSTEM 18-MAR-19 6R2S TITLE THE STRUCTURE OF PLASMODIUM VIVAX DUFFY BINDING PROTEIN (PVDBP) BOUND TITLE 2 TO HUMAN ANTIBODY DB9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY DB9 LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY DB9 HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DUFFY RECEPTOR; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: ERYTHROCYTE-BINDING PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX (STRAIN SALVADOR I); SOURCE 13 ORGANISM_TAXID: 126793; SOURCE 14 STRAIN: SALVADOR I; SOURCE 15 GENE: PVDR; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLASMODIUM VIVAX, INVASION, BROADLY-NEUTRALISING HUMAN MONOCLONAL KEYWDS 2 ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.M.BARBER,M.K.HIGGINS REVDAT 5 24-JAN-24 6R2S 1 REMARK REVDAT 4 04-SEP-19 6R2S 1 JRNL REVDAT 3 21-AUG-19 6R2S 1 REMARK REVDAT 2 12-JUN-19 6R2S 1 JRNL REVDAT 1 27-MAR-19 6R2S 0 JRNL AUTH T.A.RAWLINSON,N.M.BARBER,F.MOHRING,J.S.CHO,V.KOSAISAVEE, JRNL AUTH 2 S.F.GERARD,D.G.W.ALANINE,G.M.LABBE,S.C.ELIAS,S.E.SILK, JRNL AUTH 3 D.QUINKERT,J.JIN,J.M.MARSHALL,R.O.PAYNE,A.M.MINASSIAN, JRNL AUTH 4 B.RUSSELL,L.RENIA,F.H.NOSTEN,R.W.MOON,M.K.HIGGINS,S.J.DRAPER JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF PLASMODIUM VIVAX INVASION JRNL TITL 2 BY A BROADLY NEUTRALIZING VACCINE-INDUCED HUMAN ANTIBODY. JRNL REF NAT MICROBIOL V. 4 1497 2019 JRNL REFN ESSN 2058-5276 JRNL PMID 31133755 JRNL DOI 10.1038/S41564-019-0462-1 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 615 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2747 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 588 REMARK 3 BIN R VALUE (WORKING SET) : 0.2725 REMARK 3 BIN FREE R VALUE : 0.3246 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 109.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 115.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.91220 REMARK 3 B22 (A**2) : 16.91220 REMARK 3 B33 (A**2) : -33.82440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.516 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.303 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.523 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.308 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5890 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7993 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2035 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 980 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5890 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 770 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6482 ; 0.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.89 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.2963 -81.3279 -16.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.2292 REMARK 3 T33: 0.0141 T12: 0.0072 REMARK 3 T13: -0.1074 T23: -0.1093 REMARK 3 L TENSOR REMARK 3 L11: 1.1125 L22: 0.9988 REMARK 3 L33: 0.1150 L12: -0.7047 REMARK 3 L13: 0.2687 L23: -0.3895 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.2805 S13: 0.2479 REMARK 3 S21: -0.0951 S22: -0.1570 S23: -0.1336 REMARK 3 S31: 0.0164 S32: -0.2212 S33: 0.0916 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.5987 -98.7124 -20.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.1944 REMARK 3 T33: 0.0975 T12: -0.0051 REMARK 3 T13: -0.0120 T23: -0.1325 REMARK 3 L TENSOR REMARK 3 L11: 1.1419 L22: 1.1574 REMARK 3 L33: 0.7478 L12: -0.5168 REMARK 3 L13: 0.5495 L23: -0.6268 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: -0.0258 S13: -0.3150 REMARK 3 S21: -0.1926 S22: -0.3393 S23: 0.0087 REMARK 3 S31: 0.0046 S32: -0.0572 S33: 0.1296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 66.0176 -104.9066 -9.3304 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0819 REMARK 3 T33: 0.1970 T12: -0.0070 REMARK 3 T13: -0.0984 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.2910 L22: 0.2263 REMARK 3 L33: 0.3531 L12: 0.2706 REMARK 3 L13: 0.0113 L23: -0.4128 REMARK 3 S TENSOR REMARK 3 S11: 0.2224 S12: 0.0108 S13: -0.2408 REMARK 3 S21: -0.0344 S22: 0.0567 S23: -0.1075 REMARK 3 S31: 0.0233 S32: -0.0634 S33: -0.2791 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30707 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NUV AND 3DIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45 % V/V POLYPROPYLENE GLYCOL 400, 10% REMARK 280 V/V ETHANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.57667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.15333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.57667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.57667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 113.15333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.57667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TRP A 3 REMARK 465 SER A 4 REMARK 465 CYS A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 HIS A 18 REMARK 465 GLY A 19 REMARK 465 CYS A 233 REMARK 465 HIS B -25 REMARK 465 PRO B -24 REMARK 465 LEU B -23 REMARK 465 CYS B -22 REMARK 465 LEU B -21 REMARK 465 SER B -20 REMARK 465 LEU B -19 REMARK 465 HIS B -18 REMARK 465 ARG B -17 REMARK 465 CYS B -16 REMARK 465 PRO B -15 REMARK 465 LEU B -14 REMARK 465 PRO B -13 REMARK 465 GLY B -12 REMARK 465 PRO B -11 REMARK 465 THR B -10 REMARK 465 ALA B -9 REMARK 465 PRO B -8 REMARK 465 ARG B -7 REMARK 465 PHE B -6 REMARK 465 TYR B -5 REMARK 465 ARG B -4 REMARK 465 LEU B -3 REMARK 465 ASN B -2 REMARK 465 SER B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 TRP B 3 REMARK 465 SER B 4 REMARK 465 CYS B 5 REMARK 465 ILE B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 GLY B 16 REMARK 465 VAL B 17 REMARK 465 HIS B 18 REMARK 465 SER B 19 REMARK 465 LYS B 238 REMARK 465 SER B 239 REMARK 465 CYS B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 THR B 243 REMARK 465 HIS B 244 REMARK 465 THR B 245 REMARK 465 CYS B 246 REMARK 465 PRO B 247 REMARK 465 PRO B 248 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 SER B 251 REMARK 465 THR B 252 REMARK 465 SER C 508 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 230 SG CYS C 237 1.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 171 C - N - CD ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 -39.23 63.62 REMARK 500 SER A 86 147.00 -170.39 REMARK 500 TYR A 110 32.60 -141.22 REMARK 500 ASN A 157 76.62 45.05 REMARK 500 LYS A 188 -60.35 -107.09 REMARK 500 SER B 34 -14.08 81.79 REMARK 500 SER B 105 63.58 34.22 REMARK 500 LYS B 153 -77.02 -94.28 REMARK 500 THR B 155 -179.39 -173.86 REMARK 500 PRO B 171 -167.99 -70.63 REMARK 500 THR B 184 -36.71 -135.48 REMARK 500 THR B 215 -70.42 -71.82 REMARK 500 ASN B 228 62.66 37.46 REMARK 500 ARG C 224 11.57 59.91 REMARK 500 HIS C 262 35.64 -150.36 REMARK 500 ASP C 264 -153.74 -128.93 REMARK 500 THR C 266 -36.10 -37.49 REMARK 500 ASN C 372 40.20 -93.70 REMARK 500 TYR C 421 -7.34 63.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 6R2S A 1 233 PDB 6R2S 6R2S 1 233 DBREF 6R2S B -25 252 PDB 6R2S 6R2S -25 252 DBREF 6R2S C 211 508 UNP P22290 PVDR_PLAVS 211 508 SEQADV 6R2S SER C 209 UNP P22290 EXPRESSION TAG SEQADV 6R2S GLY C 210 UNP P22290 EXPRESSION TAG SEQRES 1 A 233 MET GLY TRP SER CYS ILE ILE LEU PHE LEU VAL ALA THR SEQRES 2 A 233 ALA THR GLY VAL HIS GLY ASP ILE VAL MET THR GLN SER SEQRES 3 A 233 PRO SER THR LEU SER ALA SER VAL GLY ASP ARG VAL THR SEQRES 4 A 233 ILE THR CYS ARG ALA SER GLN SER ILE SER SER TRP LEU SEQRES 5 A 233 ALA TRP TYR GLN GLN ARG PRO GLY LYS ALA PRO ARG LEU SEQRES 6 A 233 LEU ILE TYR LYS ALA SER SER LEU LEU SER GLY VAL PRO SEQRES 7 A 233 SER ARG PHE GLY GLY SER GLY SER GLY THR ASP PHE THR SEQRES 8 A 233 LEU THR ILE SER SER LEU GLN PRO ASP ASP PHE ALA THR SEQRES 9 A 233 TYR HIS CYS GLN HIS TYR ASN THR TYR PRO TRP THR PHE SEQRES 10 A 233 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 11 A 233 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 12 A 233 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 13 A 233 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 14 A 233 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 15 A 233 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 16 A 233 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 17 A 233 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 18 A 233 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 278 HIS PRO LEU CYS LEU SER LEU HIS ARG CYS PRO LEU PRO SEQRES 2 B 278 GLY PRO THR ALA PRO ARG PHE TYR ARG LEU ASN SER THR SEQRES 3 B 278 MET GLY TRP SER CYS ILE ILE LEU PHE LEU VAL ALA THR SEQRES 4 B 278 ALA THR GLY VAL HIS SER GLU VAL GLN LEU GLN GLU SER SEQRES 5 B 278 GLY PRO GLY LEU VAL LYS PRO SER GLU THR LEU SER LEU SEQRES 6 B 278 THR CYS THR VAL SER GLY GLY SER VAL SER SER SER THR SEQRES 7 B 278 TYR TYR TRP GLY TRP VAL ARG GLN PRO PRO GLY LYS GLY SEQRES 8 B 278 LEU GLU TRP ILE GLY SER ILE TYR TYR SER GLY SER THR SEQRES 9 B 278 TYR TYR ASN PRO SER LEU LYS SER ARG VAL THR ILE SER SEQRES 10 B 278 VAL ASP THR SER LYS ASN GLN PHE SER LEU LYS LEU SER SEQRES 11 B 278 SER VAL THR ALA ALA ASP THR ALA VAL TYR TYR CYS ALA SEQRES 12 B 278 ARG ASP GLY THR GLY ALA LEU ASP LEU TRP GLY ARG GLY SEQRES 13 B 278 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 14 B 278 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 15 B 278 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 16 B 278 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 17 B 278 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 18 B 278 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 19 B 278 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 20 B 278 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 21 B 278 VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR CYS PRO SEQRES 22 B 278 PRO ASP PRO SER THR SEQRES 1 C 300 SER GLY ASN THR VAL MET LYS ASN CYS ASN TYR LYS ARG SEQRES 2 C 300 LYS ARG ARG GLU ARG ASP TRP ASP CYS ASN THR LYS LYS SEQRES 3 C 300 ASP VAL CYS ILE PRO ASP ARG ARG TYR GLN LEU CYS MET SEQRES 4 C 300 LYS GLU LEU THR ASN LEU VAL ASN ASN THR ASP THR ASN SEQRES 5 C 300 PHE HIS ARG ASP ILE THR PHE ARG LYS LEU TYR LEU LYS SEQRES 6 C 300 ARG LYS LEU ILE TYR ASP ALA ALA VAL GLU GLY ASP LEU SEQRES 7 C 300 LEU LEU LYS LEU ASN ASN TYR ARG TYR ASN LYS ASP PHE SEQRES 8 C 300 CYS LYS ASP ILE ARG TRP SER LEU GLY ASP PHE GLY ASP SEQRES 9 C 300 ILE ILE MET GLY THR ASP MET GLU GLY ILE GLY TYR SER SEQRES 10 C 300 LYS VAL VAL GLU ASN ASN LEU ARG SER ILE PHE GLY THR SEQRES 11 C 300 ASP GLU LYS ALA GLN GLN ARG ARG LYS GLN TRP TRP ASN SEQRES 12 C 300 GLU SER LYS ALA GLN ILE TRP THR ALA MET MET TYR SER SEQRES 13 C 300 VAL LYS LYS ARG LEU LYS GLY ASN PHE ILE TRP ILE CYS SEQRES 14 C 300 LYS LEU ASN VAL ALA VAL ASN ILE GLU PRO GLN ILE TYR SEQRES 15 C 300 ARG TRP ILE ARG GLU TRP GLY ARG ASP TYR VAL SER GLU SEQRES 16 C 300 LEU PRO THR GLU VAL GLN LYS LEU LYS GLU LYS CYS ASP SEQRES 17 C 300 GLY LYS ILE ASN TYR THR ASP LYS LYS VAL CYS LYS VAL SEQRES 18 C 300 PRO PRO CYS GLN ASN ALA CYS LYS SER TYR ASP GLN TRP SEQRES 19 C 300 ILE THR ARG LYS LYS ASN GLN TRP ASP VAL LEU SER ASN SEQRES 20 C 300 LYS PHE ILE SER VAL LYS ASN ALA GLU LYS VAL GLN THR SEQRES 21 C 300 ALA GLY ILE VAL THR PRO TYR ASP ILE LEU LYS GLN GLU SEQRES 22 C 300 LEU ASP GLU PHE ASN GLU VAL ALA PHE GLU ASN GLU ILE SEQRES 23 C 300 ASN LYS ARG ASP GLY ALA TYR ILE GLU LEU CYS VAL CYS SEQRES 24 C 300 SER HELIX 1 AA1 GLN A 98 PHE A 102 5 5 HELIX 2 AA2 SER A 140 LYS A 145 1 6 HELIX 3 AA3 LYS A 202 LYS A 207 1 6 HELIX 4 AA4 THR B 107 THR B 111 5 5 HELIX 5 AA5 SER B 180 ALA B 182 5 3 HELIX 6 AA6 SER B 211 LEU B 213 5 3 HELIX 7 AA7 PRO C 239 GLN C 244 1 6 HELIX 8 AA8 MET C 247 LEU C 253 1 7 HELIX 9 AA9 ASP C 258 ARG C 263 5 6 HELIX 10 AB1 ASP C 264 ASN C 291 1 28 HELIX 11 AB2 ASN C 296 GLY C 316 1 21 HELIX 12 AB3 GLY C 323 GLY C 337 1 15 HELIX 13 AB4 LYS C 341 GLU C 352 1 12 HELIX 14 AB5 SER C 353 MET C 362 1 10 HELIX 15 AB6 MET C 362 LEU C 369 1 8 HELIX 16 AB7 LYS C 378 VAL C 383 1 6 HELIX 17 AB8 PRO C 387 ASP C 416 1 30 HELIX 18 AB9 LYS C 425 VAL C 429 1 5 HELIX 19 AC1 VAL C 429 GLU C 464 1 36 HELIX 20 AC2 THR C 473 LEU C 482 1 10 HELIX 21 AC3 ASN C 486 ASN C 495 1 10 HELIX 22 AC4 ASP C 498 VAL C 506 1 9 SHEET 1 AA1 3 MET A 23 SER A 26 0 SHEET 2 AA1 3 VAL A 38 ILE A 48 -1 O ARG A 43 N THR A 24 SHEET 3 AA1 3 PHE A 81 ILE A 94 -1 O ILE A 94 N VAL A 38 SHEET 1 AA2 6 THR A 29 SER A 33 0 SHEET 2 AA2 6 THR A 121 LYS A 126 1 O LYS A 126 N ALA A 32 SHEET 3 AA2 6 ALA A 103 HIS A 109 -1 N TYR A 105 O THR A 121 SHEET 4 AA2 6 LEU A 52 GLN A 57 -1 N TYR A 55 O HIS A 106 SHEET 5 AA2 6 ARG A 64 TYR A 68 -1 O LEU A 66 N TRP A 54 SHEET 6 AA2 6 SER A 72 LEU A 73 -1 O SER A 72 N TYR A 68 SHEET 1 AA3 4 THR A 29 SER A 33 0 SHEET 2 AA3 4 THR A 121 LYS A 126 1 O LYS A 126 N ALA A 32 SHEET 3 AA3 4 ALA A 103 HIS A 109 -1 N TYR A 105 O THR A 121 SHEET 4 AA3 4 THR A 116 PHE A 117 -1 O THR A 116 N HIS A 109 SHEET 1 AA4 4 SER A 133 PHE A 137 0 SHEET 2 AA4 4 THR A 148 PHE A 158 -1 O VAL A 152 N PHE A 137 SHEET 3 AA4 4 TYR A 192 SER A 201 -1 O LEU A 198 N VAL A 151 SHEET 4 AA4 4 SER A 178 VAL A 182 -1 N GLN A 179 O THR A 197 SHEET 1 AA5 4 ALA A 172 LEU A 173 0 SHEET 2 AA5 4 ALA A 163 VAL A 169 -1 N VAL A 169 O ALA A 172 SHEET 3 AA5 4 VAL A 210 HIS A 217 -1 O GLU A 214 N GLN A 166 SHEET 4 AA5 4 VAL A 224 ASN A 229 -1 O VAL A 224 N VAL A 215 SHEET 1 AA6 4 GLN B 22 SER B 26 0 SHEET 2 AA6 4 LEU B 37 SER B 44 -1 O THR B 40 N SER B 26 SHEET 3 AA6 4 GLN B 98 LEU B 103 -1 O LEU B 103 N LEU B 37 SHEET 4 AA6 4 VAL B 88 ASP B 93 -1 N ASP B 93 O GLN B 98 SHEET 1 AA7 6 LEU B 30 VAL B 31 0 SHEET 2 AA7 6 THR B 131 VAL B 135 1 O THR B 134 N VAL B 31 SHEET 3 AA7 6 ALA B 112 GLY B 120 -1 N TYR B 114 O THR B 131 SHEET 4 AA7 6 TYR B 54 GLN B 60 -1 N VAL B 58 O TYR B 115 SHEET 5 AA7 6 GLU B 67 ILE B 72 -1 O GLU B 67 N ARG B 59 SHEET 6 AA7 6 THR B 78 TYR B 80 -1 O TYR B 79 N SER B 71 SHEET 1 AA8 4 LEU B 30 VAL B 31 0 SHEET 2 AA8 4 THR B 131 VAL B 135 1 O THR B 134 N VAL B 31 SHEET 3 AA8 4 ALA B 112 GLY B 120 -1 N TYR B 114 O THR B 131 SHEET 4 AA8 4 ALA B 123 TRP B 127 -1 O LEU B 126 N ARG B 118 SHEET 1 AA9 4 SER B 144 LEU B 148 0 SHEET 2 AA9 4 THR B 159 TYR B 169 -1 O GLY B 163 N LEU B 148 SHEET 3 AA9 4 TYR B 200 PRO B 209 -1 O VAL B 208 N ALA B 160 SHEET 4 AA9 4 VAL B 187 THR B 189 -1 N HIS B 188 O VAL B 205 SHEET 1 AB1 4 SER B 144 LEU B 148 0 SHEET 2 AB1 4 THR B 159 TYR B 169 -1 O GLY B 163 N LEU B 148 SHEET 3 AB1 4 TYR B 200 PRO B 209 -1 O VAL B 208 N ALA B 160 SHEET 4 AB1 4 VAL B 193 LEU B 194 -1 N VAL B 193 O SER B 201 SHEET 1 AB2 3 THR B 175 TRP B 178 0 SHEET 2 AB2 3 ILE B 219 HIS B 224 -1 O ASN B 221 N SER B 177 SHEET 3 AB2 3 THR B 229 ARG B 234 -1 O THR B 229 N HIS B 224 SHEET 1 AB3 2 LYS C 418 ILE C 419 0 SHEET 2 AB3 2 ASP C 423 LYS C 424 -1 O ASP C 423 N ILE C 419 SSBOND 1 CYS A 42 CYS A 107 1555 1555 1.92 SSBOND 2 CYS A 153 CYS A 213 1555 1555 2.05 SSBOND 3 CYS B 41 CYS B 116 1555 1555 2.08 SSBOND 4 CYS B 164 CYS B 220 1555 1555 2.06 SSBOND 5 CYS C 217 CYS C 246 1555 1555 2.06 SSBOND 6 CYS C 300 CYS C 377 1555 1555 2.05 SSBOND 7 CYS C 415 CYS C 432 1555 1555 2.05 SSBOND 8 CYS C 427 CYS C 507 1555 1555 2.05 SSBOND 9 CYS C 436 CYS C 505 1555 1555 2.05 CISPEP 1 SER A 26 PRO A 27 0 -0.65 CISPEP 2 TYR A 113 PRO A 114 0 -0.90 CISPEP 3 TYR A 159 PRO A 160 0 8.37 CISPEP 4 PHE B 170 PRO B 171 0 2.71 CRYST1 173.560 173.560 169.730 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005762 0.003327 0.000000 0.00000 SCALE2 0.000000 0.006653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005892 0.00000