HEADER ALLERGEN 20-MAR-19 6R3C TITLE SOLUTION STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR POLLEN ALLERGEN BET V 1-A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALLERGEN BET V I-A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETULA PENDULA; SOURCE 3 ORGANISM_COMMON: EUROPEAN WHITE BIRCH; SOURCE 4 ORGANISM_TAXID: 3505; SOURCE 5 GENE: BETVIA, BETVI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BET V 1, BIRCH POLLEN ALLERGEN, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SCHWEIMER REVDAT 1 03-JUL-19 6R3C 0 JRNL AUTH T.JACOB,C.S.VON LOETZEN,A.REUTER,U.LACHER,D.SCHILLER, JRNL AUTH 2 R.SCHOBERT,V.MAHLER,S.VIETHS,P.ROSCH,K.SCHWEIMER,B.M.WOHRL JRNL TITL IDENTIFICATION OF A NATURAL LIGAND OF THE HAZEL ALLERGEN COR JRNL TITL 2 A 1. JRNL REF SCI REP V. 9 8714 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31213622 JRNL DOI 10.1038/S41598-019-44999-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101359. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] BETV1A, REMARK 210 0.05 MM SODIUM CHLORIDE, 0.05 MM REMARK 210 SODIUM PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 81 O ILE A 102 1.57 REMARK 500 O ALA A 15 H PHE A 19 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 23 -62.57 -100.48 REMARK 500 1 GLU A 73 140.31 178.93 REMARK 500 1 PHE A 79 27.08 44.72 REMARK 500 1 THR A 94 24.95 -168.47 REMARK 500 1 GLU A 96 56.23 -158.06 REMARK 500 2 ILE A 23 -60.50 -102.80 REMARK 500 2 ASN A 47 39.18 -153.07 REMARK 500 2 THR A 94 20.93 -158.72 REMARK 500 2 GLU A 96 49.86 -159.90 REMARK 500 3 ILE A 23 -63.50 -100.60 REMARK 500 3 ILE A 86 -68.62 -104.21 REMARK 500 3 ASP A 93 68.36 -65.48 REMARK 500 3 GLU A 96 47.71 -177.85 REMARK 500 3 ALA A 157 -150.60 43.99 REMARK 500 4 ILE A 23 -63.91 -101.45 REMARK 500 4 GLU A 73 144.48 176.87 REMARK 500 4 PHE A 79 28.88 45.30 REMARK 500 4 THR A 94 24.78 -166.56 REMARK 500 4 GLU A 96 53.64 -157.37 REMARK 500 5 ILE A 23 -63.58 -108.27 REMARK 500 5 ASN A 47 47.20 -154.69 REMARK 500 5 GLU A 73 154.37 179.73 REMARK 500 5 PHE A 79 26.92 44.75 REMARK 500 5 THR A 94 22.64 -160.47 REMARK 500 5 GLU A 96 50.38 -157.10 REMARK 500 5 ASP A 125 25.41 46.64 REMARK 500 6 ILE A 23 -63.66 -102.12 REMARK 500 6 GLU A 73 140.54 178.34 REMARK 500 6 PHE A 79 27.51 44.33 REMARK 500 6 ASP A 93 74.01 -64.61 REMARK 500 6 GLU A 96 48.29 -172.60 REMARK 500 6 ALA A 157 -85.08 62.72 REMARK 500 7 ILE A 23 -63.72 -106.21 REMARK 500 7 GLU A 60 150.25 -49.28 REMARK 500 7 GLU A 73 149.53 178.16 REMARK 500 7 THR A 94 23.43 -161.99 REMARK 500 7 GLU A 96 48.10 -160.45 REMARK 500 8 ILE A 23 -63.82 -104.76 REMARK 500 8 GLU A 60 165.78 -42.75 REMARK 500 8 THR A 94 24.12 -164.93 REMARK 500 8 GLU A 96 51.26 -155.16 REMARK 500 9 ILE A 23 -63.85 -106.00 REMARK 500 9 PRO A 59 34.09 -83.76 REMARK 500 9 PHE A 62 171.86 -49.13 REMARK 500 9 GLU A 73 147.32 177.60 REMARK 500 9 PHE A 79 28.51 44.11 REMARK 500 9 THR A 94 21.19 -158.99 REMARK 500 9 GLU A 96 50.50 -154.09 REMARK 500 10 ILE A 23 -64.17 -103.77 REMARK 500 10 SER A 40 147.54 -170.70 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 17 0.31 SIDE CHAIN REMARK 500 1 ARG A 70 0.22 SIDE CHAIN REMARK 500 1 ARG A 145 0.30 SIDE CHAIN REMARK 500 2 ARG A 17 0.11 SIDE CHAIN REMARK 500 2 ARG A 70 0.27 SIDE CHAIN REMARK 500 2 ARG A 145 0.29 SIDE CHAIN REMARK 500 3 ARG A 17 0.31 SIDE CHAIN REMARK 500 3 ARG A 70 0.19 SIDE CHAIN REMARK 500 3 ARG A 145 0.31 SIDE CHAIN REMARK 500 4 ARG A 17 0.30 SIDE CHAIN REMARK 500 4 ARG A 70 0.22 SIDE CHAIN REMARK 500 4 ARG A 145 0.10 SIDE CHAIN REMARK 500 5 ARG A 17 0.21 SIDE CHAIN REMARK 500 5 ARG A 70 0.20 SIDE CHAIN REMARK 500 5 ARG A 145 0.31 SIDE CHAIN REMARK 500 6 ARG A 17 0.25 SIDE CHAIN REMARK 500 6 ARG A 70 0.23 SIDE CHAIN REMARK 500 6 ARG A 145 0.11 SIDE CHAIN REMARK 500 7 ARG A 17 0.26 SIDE CHAIN REMARK 500 7 ARG A 70 0.22 SIDE CHAIN REMARK 500 7 ARG A 145 0.31 SIDE CHAIN REMARK 500 8 ARG A 17 0.09 SIDE CHAIN REMARK 500 8 ARG A 70 0.29 SIDE CHAIN REMARK 500 8 ARG A 145 0.23 SIDE CHAIN REMARK 500 9 ARG A 17 0.26 SIDE CHAIN REMARK 500 9 ARG A 70 0.25 SIDE CHAIN REMARK 500 9 ARG A 145 0.30 SIDE CHAIN REMARK 500 10 ARG A 17 0.31 SIDE CHAIN REMARK 500 10 ARG A 70 0.08 SIDE CHAIN REMARK 500 10 ARG A 145 0.22 SIDE CHAIN REMARK 500 11 ARG A 17 0.32 SIDE CHAIN REMARK 500 11 ARG A 70 0.20 SIDE CHAIN REMARK 500 11 ARG A 145 0.26 SIDE CHAIN REMARK 500 12 ARG A 17 0.26 SIDE CHAIN REMARK 500 12 ARG A 70 0.20 SIDE CHAIN REMARK 500 12 ARG A 145 0.31 SIDE CHAIN REMARK 500 13 ARG A 17 0.22 SIDE CHAIN REMARK 500 13 ARG A 70 0.26 SIDE CHAIN REMARK 500 13 ARG A 145 0.27 SIDE CHAIN REMARK 500 14 ARG A 17 0.32 SIDE CHAIN REMARK 500 14 ARG A 70 0.24 SIDE CHAIN REMARK 500 14 ARG A 145 0.31 SIDE CHAIN REMARK 500 15 ARG A 17 0.17 SIDE CHAIN REMARK 500 15 ARG A 70 0.12 SIDE CHAIN REMARK 500 15 ARG A 145 0.25 SIDE CHAIN REMARK 500 16 ARG A 17 0.16 SIDE CHAIN REMARK 500 16 ARG A 70 0.29 SIDE CHAIN REMARK 500 16 ARG A 145 0.27 SIDE CHAIN REMARK 500 17 ARG A 17 0.32 SIDE CHAIN REMARK 500 17 ARG A 70 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 59 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34383 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1A DBREF 6R3C A 1 159 UNP P15494 BEV1A_BETPN 2 160 SEQRES 1 A 159 GLY VAL PHE ASN TYR GLU THR GLU THR THR SER VAL ILE SEQRES 2 A 159 PRO ALA ALA ARG LEU PHE LYS ALA PHE ILE LEU ASP GLY SEQRES 3 A 159 ASP ASN LEU PHE PRO LYS VAL ALA PRO GLN ALA ILE SER SEQRES 4 A 159 SER VAL GLU ASN ILE GLU GLY ASN GLY GLY PRO GLY THR SEQRES 5 A 159 ILE LYS LYS ILE SER PHE PRO GLU GLY PHE PRO PHE LYS SEQRES 6 A 159 TYR VAL LYS ASP ARG VAL ASP GLU VAL ASP HIS THR ASN SEQRES 7 A 159 PHE LYS TYR ASN TYR SER VAL ILE GLU GLY GLY PRO ILE SEQRES 8 A 159 GLY ASP THR LEU GLU LYS ILE SER ASN GLU ILE LYS ILE SEQRES 9 A 159 VAL ALA THR PRO ASP GLY GLY SER ILE LEU LYS ILE SER SEQRES 10 A 159 ASN LYS TYR HIS THR LYS GLY ASP HIS GLU VAL LYS ALA SEQRES 11 A 159 GLU GLN VAL LYS ALA SER LYS GLU MET GLY GLU THR LEU SEQRES 12 A 159 LEU ARG ALA VAL GLU SER TYR LEU LEU ALA HIS SER ASP SEQRES 13 A 159 ALA TYR ASN HELIX 1 AA1 PRO A 14 LEU A 24 1 11 HELIX 2 AA2 ASP A 25 ALA A 34 1 10 HELIX 3 AA3 LYS A 129 ALA A 157 1 29 SHEET 1 AA1 7 VAL A 2 SER A 11 0 SHEET 2 AA1 7 GLY A 111 HIS A 121 -1 O ASN A 118 N TYR A 5 SHEET 3 AA1 7 LYS A 97 THR A 107 -1 N LYS A 103 O LYS A 115 SHEET 4 AA1 7 LYS A 80 VAL A 85 -1 N TYR A 81 O ILE A 102 SHEET 5 AA1 7 TYR A 66 ASP A 75 -1 N ARG A 70 O SER A 84 SHEET 6 AA1 7 ILE A 53 SER A 57 -1 N LYS A 54 O ASP A 69 SHEET 7 AA1 7 SER A 40 GLU A 45 -1 N GLU A 42 O LYS A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1