HEADER TRANSFERASE 20-MAR-19 6R3E TITLE HUMAN DNMT3B PWWP DOMAIN IN COMPLEX WITH TRIISOPROPANOLAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B,DNA (CYTOSINE-5)- COMPND 3 METHYLTRANSFERASE 3B; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DNMT3B,DNA METHYLTRANSFERASE HSAIIIB,M.HSAIIIB,DNMT3B,DNA COMPND 6 METHYLTRANSFERASE HSAIIIB,M.HSAIIIB; COMPND 7 EC: 2.1.1.37,2.1.1.37; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNMT3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS DNMT3B PWWP DOMAIN, HISTONE BINDING, BETA BARREL, LIGAND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.RONDELET,T.DAL MASO,J.WOUTERS REVDAT 2 24-JAN-24 6R3E 1 REMARK REVDAT 1 08-APR-20 6R3E 0 JRNL AUTH G.RONDELET,T.DAL MASO,A.MANIQUET,Q.THEMANS,J.WOUTERS JRNL TITL TARGETING PWWP DOMAIN OF DNMT3B FOR EPIGENETIC CANCER JRNL TITL 2 THERAPY: IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 3 POTENTIAL PROTEIN-PROTEIN INTERACTION INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7814 - 6.7136 1.00 1594 139 0.1925 0.2551 REMARK 3 2 6.7136 - 5.3325 1.00 1587 144 0.1997 0.2337 REMARK 3 3 5.3325 - 4.6595 1.00 1596 141 0.1702 0.2210 REMARK 3 4 4.6595 - 4.2340 1.00 1621 150 0.1755 0.2362 REMARK 3 5 4.2340 - 3.9308 1.00 1558 142 0.1846 0.2188 REMARK 3 6 3.9308 - 3.6992 1.00 1588 138 0.2003 0.2330 REMARK 3 7 3.6992 - 3.5141 1.00 1606 129 0.2187 0.2335 REMARK 3 8 3.5141 - 3.3612 1.00 1593 144 0.2181 0.3081 REMARK 3 9 3.3612 - 3.2318 1.00 1573 138 0.2350 0.3174 REMARK 3 10 3.2318 - 3.1203 1.00 1607 154 0.2250 0.2707 REMARK 3 11 3.1203 - 3.0228 1.00 1628 136 0.2438 0.3081 REMARK 3 12 3.0228 - 2.9364 1.00 1566 146 0.2299 0.2351 REMARK 3 13 2.9364 - 2.8591 1.00 1572 138 0.2434 0.2861 REMARK 3 14 2.8591 - 2.7894 1.00 1671 132 0.2456 0.2679 REMARK 3 15 2.7894 - 2.7260 1.00 1555 142 0.2680 0.3752 REMARK 3 16 2.7260 - 2.6680 1.00 1615 144 0.2607 0.3068 REMARK 3 17 2.6680 - 2.6146 1.00 1579 144 0.2799 0.3624 REMARK 3 18 2.6146 - 2.5653 1.00 1573 142 0.2830 0.3218 REMARK 3 19 2.5653 - 2.5195 1.00 1612 148 0.2977 0.3410 REMARK 3 20 2.5195 - 2.4768 1.00 1557 138 0.3077 0.3142 REMARK 3 21 2.4768 - 2.4369 1.00 1625 152 0.3434 0.3585 REMARK 3 22 2.4369 - 2.3994 1.00 1550 142 0.3533 0.3567 REMARK 3 23 2.3994 - 2.3641 1.00 1632 152 0.3727 0.3797 REMARK 3 24 2.3641 - 2.3308 1.00 1554 144 0.3832 0.3892 REMARK 3 25 2.3308 - 2.2993 1.00 1592 144 0.4194 0.4541 REMARK 3 26 2.2993 - 2.2694 0.97 1566 133 0.4567 0.4364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2212 REMARK 3 ANGLE : 1.001 2975 REMARK 3 CHIRALITY : 0.050 291 REMARK 3 PLANARITY : 0.006 364 REMARK 3 DIHEDRAL : 3.505 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7-6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : CHANNEL CUT MONOCHROMATOR REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.269 REMARK 200 RESOLUTION RANGE LOW (A) : 40.776 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.2 M LI2SO4, 23-33% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.45800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.72900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.72900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.45800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 644 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 PRO A 321 REMARK 465 GLY A 322 REMARK 465 ASP A 323 REMARK 465 SER A 352 REMARK 465 GLU A 353 REMARK 465 TYR A 354 REMARK 465 GLN A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 357 REMARK 465 LYS A 358 REMARK 465 GLU A 359 REMARK 465 PHE A 360 REMARK 465 GLY A 361 REMARK 465 ILE A 362 REMARK 465 GLY A 363 REMARK 465 ASP A 364 REMARK 465 LEU A 365 REMARK 465 VAL A 366 REMARK 465 TRP A 367 REMARK 465 GLY A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 465 LYS A 371 REMARK 465 GLY A 372 REMARK 465 PHE A 373 REMARK 465 SER A 374 REMARK 465 TRP A 375 REMARK 465 TRP A 376 REMARK 465 PRO A 377 REMARK 465 ALA A 378 REMARK 465 MET A 379 REMARK 465 VAL A 380 REMARK 465 VAL A 381 REMARK 465 SER A 382 REMARK 465 TRP A 383 REMARK 465 LYS A 384 REMARK 465 ALA A 385 REMARK 465 THR A 386 REMARK 465 SER A 387 REMARK 465 LYS A 388 REMARK 465 ARG A 389 REMARK 465 GLN A 390 REMARK 465 ALA A 391 REMARK 465 MET A 392 REMARK 465 SER A 393 REMARK 465 GLY A 394 REMARK 465 MET A 395 REMARK 465 ARG A 396 REMARK 465 TRP A 397 REMARK 465 VAL A 398 REMARK 465 GLN A 399 REMARK 465 TRP A 400 REMARK 465 PHE A 401 REMARK 465 GLY A 402 REMARK 465 ASP A 403 REMARK 465 GLY A 404 REMARK 465 LYS A 405 REMARK 465 PHE A 406 REMARK 465 SER A 407 REMARK 465 GLU A 408 REMARK 465 VAL A 409 REMARK 465 SER A 410 REMARK 465 ALA A 411 REMARK 465 ASP A 412 REMARK 465 LYS A 413 REMARK 465 LEU A 414 REMARK 465 VAL A 415 REMARK 465 ALA A 416 REMARK 465 LEU A 417 REMARK 465 GLY A 418 REMARK 465 LEU A 419 REMARK 465 PHE A 420 REMARK 465 SER A 421 REMARK 465 GLN A 422 REMARK 465 HIS A 423 REMARK 465 PHE A 424 REMARK 465 ASN A 425 REMARK 465 LEU A 426 REMARK 465 ALA A 427 REMARK 465 THR A 428 REMARK 465 PHE A 429 REMARK 465 ASN A 430 REMARK 465 LYS A 431 REMARK 465 LEU A 432 REMARK 465 VAL A 433 REMARK 465 SER A 434 REMARK 465 TYR A 435 REMARK 465 ARG A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 MET A 439 REMARK 465 TYR A 440 REMARK 465 HIS A 441 REMARK 465 ALA A 442 REMARK 465 LEU A 443 REMARK 465 GLU A 444 REMARK 465 LYS A 445 REMARK 465 ALA A 446 REMARK 465 ARG A 447 REMARK 465 VAL A 448 REMARK 465 ARG A 449 REMARK 465 ALA A 450 REMARK 465 GLY A 451 REMARK 465 LYS A 452 REMARK 465 THR A 453 REMARK 465 PHE A 454 REMARK 465 PRO A 455 REMARK 465 SER A 456 REMARK 465 SER A 457 REMARK 465 PRO A 458 REMARK 465 GLY A 459 REMARK 465 ASP A 460 REMARK 465 SER A 461 REMARK 465 LEU A 462 REMARK 465 GLU A 463 REMARK 465 ASP A 464 REMARK 465 GLN A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 PRO A 468 REMARK 465 MET A 469 REMARK 465 LEU A 470 REMARK 465 GLU A 471 REMARK 465 TRP A 472 REMARK 465 ALA A 473 REMARK 465 HIS A 474 REMARK 465 GLY A 475 REMARK 465 GLY A 476 REMARK 465 PHE A 477 REMARK 465 LYS A 478 REMARK 465 PRO A 479 REMARK 465 THR A 480 REMARK 465 GLY A 481 REMARK 465 ILE A 482 REMARK 465 GLU A 483 REMARK 465 GLY A 484 REMARK 465 LEU A 485 REMARK 465 LYS A 486 REMARK 465 PRO A 487 REMARK 465 ASN A 488 REMARK 465 SER B 319 REMARK 465 SER B 320 REMARK 465 PRO B 321 REMARK 465 GLY B 322 REMARK 465 ASP B 323 REMARK 465 SER B 324 REMARK 465 SER B 352 REMARK 465 GLU B 353 REMARK 465 TYR B 354 REMARK 465 GLN B 355 REMARK 465 ASP B 356 REMARK 465 GLY B 357 REMARK 465 LYS B 358 REMARK 465 GLU B 359 REMARK 465 PHE B 360 REMARK 465 GLY B 361 REMARK 465 ILE B 362 REMARK 465 GLY B 363 REMARK 465 ASP B 364 REMARK 465 LEU B 365 REMARK 465 VAL B 366 REMARK 465 TRP B 367 REMARK 465 GLY B 368 REMARK 465 LYS B 369 REMARK 465 ILE B 370 REMARK 465 LYS B 371 REMARK 465 GLY B 372 REMARK 465 PHE B 373 REMARK 465 SER B 374 REMARK 465 TRP B 375 REMARK 465 TRP B 376 REMARK 465 PRO B 377 REMARK 465 ALA B 378 REMARK 465 MET B 379 REMARK 465 VAL B 380 REMARK 465 VAL B 381 REMARK 465 SER B 382 REMARK 465 TRP B 383 REMARK 465 LYS B 384 REMARK 465 ALA B 385 REMARK 465 THR B 386 REMARK 465 SER B 387 REMARK 465 LYS B 388 REMARK 465 ARG B 389 REMARK 465 GLN B 390 REMARK 465 ALA B 391 REMARK 465 MET B 392 REMARK 465 SER B 393 REMARK 465 GLY B 394 REMARK 465 MET B 395 REMARK 465 ARG B 396 REMARK 465 TRP B 397 REMARK 465 VAL B 398 REMARK 465 GLN B 399 REMARK 465 TRP B 400 REMARK 465 PHE B 401 REMARK 465 GLY B 402 REMARK 465 ASP B 403 REMARK 465 GLY B 404 REMARK 465 LYS B 405 REMARK 465 PHE B 406 REMARK 465 SER B 407 REMARK 465 GLU B 408 REMARK 465 VAL B 409 REMARK 465 SER B 410 REMARK 465 ALA B 411 REMARK 465 ASP B 412 REMARK 465 LYS B 413 REMARK 465 LEU B 414 REMARK 465 VAL B 415 REMARK 465 ALA B 416 REMARK 465 LEU B 417 REMARK 465 GLY B 418 REMARK 465 LEU B 419 REMARK 465 PHE B 420 REMARK 465 SER B 421 REMARK 465 GLN B 422 REMARK 465 HIS B 423 REMARK 465 PHE B 424 REMARK 465 ASN B 425 REMARK 465 LEU B 426 REMARK 465 ALA B 427 REMARK 465 THR B 428 REMARK 465 PHE B 429 REMARK 465 ASN B 430 REMARK 465 LYS B 431 REMARK 465 LEU B 432 REMARK 465 VAL B 433 REMARK 465 SER B 434 REMARK 465 TYR B 435 REMARK 465 ARG B 436 REMARK 465 LYS B 437 REMARK 465 ALA B 438 REMARK 465 MET B 439 REMARK 465 TYR B 440 REMARK 465 HIS B 441 REMARK 465 ALA B 442 REMARK 465 LEU B 443 REMARK 465 GLU B 444 REMARK 465 LYS B 445 REMARK 465 ALA B 446 REMARK 465 ARG B 447 REMARK 465 VAL B 448 REMARK 465 ARG B 449 REMARK 465 ALA B 450 REMARK 465 GLY B 451 REMARK 465 LYS B 452 REMARK 465 THR B 453 REMARK 465 PHE B 454 REMARK 465 PRO B 455 REMARK 465 SER B 456 REMARK 465 SER B 457 REMARK 465 PRO B 458 REMARK 465 GLY B 459 REMARK 465 ASP B 460 REMARK 465 SER B 461 REMARK 465 LEU B 462 REMARK 465 GLU B 463 REMARK 465 ASP B 464 REMARK 465 GLN B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 PRO B 468 REMARK 465 MET B 469 REMARK 465 LEU B 470 REMARK 465 GLU B 471 REMARK 465 TRP B 472 REMARK 465 ALA B 473 REMARK 465 HIS B 474 REMARK 465 GLY B 475 REMARK 465 GLY B 476 REMARK 465 PHE B 477 REMARK 465 LYS B 478 REMARK 465 PRO B 479 REMARK 465 THR B 480 REMARK 465 GLY B 481 REMARK 465 ILE B 482 REMARK 465 GLU B 483 REMARK 465 GLY B 484 REMARK 465 LEU B 485 REMARK 465 LYS B 486 REMARK 465 PRO B 487 REMARK 465 ASN B 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 276 O HOH B 601 2.09 REMARK 500 O PRO A 350 O HOH A 601 2.12 REMARK 500 O SER B 284 O HOH B 602 2.12 REMARK 500 O THR A 343 O HOH A 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 218 74.13 -106.35 REMARK 500 PHE A 223 131.15 72.87 REMARK 500 LYS A 251 -92.09 -124.51 REMARK 500 PHE B 223 121.27 81.46 REMARK 500 LYS B 234 109.84 -46.44 REMARK 500 TRP B 238 88.97 27.94 REMARK 500 LYS B 251 -96.78 -135.42 REMARK 500 PRO B 342 38.37 -91.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 96H A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 DBREF 6R3E A 215 351 UNP Q9UBC3 DNM3B_HUMAN 215 351 DBREF 6R3E A 352 488 UNP Q9UBC3 DNM3B_HUMAN 139 275 DBREF 6R3E B 215 351 UNP Q9UBC3 DNM3B_HUMAN 215 351 DBREF 6R3E B 352 488 UNP Q9UBC3 DNM3B_HUMAN 139 275 SEQRES 1 A 274 SER GLU TYR GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP SEQRES 2 A 274 LEU VAL TRP GLY LYS ILE LYS GLY PHE SER TRP TRP PRO SEQRES 3 A 274 ALA MET VAL VAL SER TRP LYS ALA THR SER LYS ARG GLN SEQRES 4 A 274 ALA MET SER GLY MET ARG TRP VAL GLN TRP PHE GLY ASP SEQRES 5 A 274 GLY LYS PHE SER GLU VAL SER ALA ASP LYS LEU VAL ALA SEQRES 6 A 274 LEU GLY LEU PHE SER GLN HIS PHE ASN LEU ALA THR PHE SEQRES 7 A 274 ASN LYS LEU VAL SER TYR ARG LYS ALA MET TYR HIS ALA SEQRES 8 A 274 LEU GLU LYS ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SEQRES 9 A 274 SER SER PRO GLY ASP SER LEU GLU ASP GLN LEU LYS PRO SEQRES 10 A 274 MET LEU GLU TRP ALA HIS GLY GLY PHE LYS PRO THR GLY SEQRES 11 A 274 ILE GLU GLY LEU LYS PRO ASN SER GLU TYR GLN ASP GLY SEQRES 12 A 274 LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP GLY LYS ILE SEQRES 13 A 274 LYS GLY PHE SER TRP TRP PRO ALA MET VAL VAL SER TRP SEQRES 14 A 274 LYS ALA THR SER LYS ARG GLN ALA MET SER GLY MET ARG SEQRES 15 A 274 TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SER GLU VAL SEQRES 16 A 274 SER ALA ASP LYS LEU VAL ALA LEU GLY LEU PHE SER GLN SEQRES 17 A 274 HIS PHE ASN LEU ALA THR PHE ASN LYS LEU VAL SER TYR SEQRES 18 A 274 ARG LYS ALA MET TYR HIS ALA LEU GLU LYS ALA ARG VAL SEQRES 19 A 274 ARG ALA GLY LYS THR PHE PRO SER SER PRO GLY ASP SER SEQRES 20 A 274 LEU GLU ASP GLN LEU LYS PRO MET LEU GLU TRP ALA HIS SEQRES 21 A 274 GLY GLY PHE LYS PRO THR GLY ILE GLU GLY LEU LYS PRO SEQRES 22 A 274 ASN SEQRES 1 B 274 SER GLU TYR GLN ASP GLY LYS GLU PHE GLY ILE GLY ASP SEQRES 2 B 274 LEU VAL TRP GLY LYS ILE LYS GLY PHE SER TRP TRP PRO SEQRES 3 B 274 ALA MET VAL VAL SER TRP LYS ALA THR SER LYS ARG GLN SEQRES 4 B 274 ALA MET SER GLY MET ARG TRP VAL GLN TRP PHE GLY ASP SEQRES 5 B 274 GLY LYS PHE SER GLU VAL SER ALA ASP LYS LEU VAL ALA SEQRES 6 B 274 LEU GLY LEU PHE SER GLN HIS PHE ASN LEU ALA THR PHE SEQRES 7 B 274 ASN LYS LEU VAL SER TYR ARG LYS ALA MET TYR HIS ALA SEQRES 8 B 274 LEU GLU LYS ALA ARG VAL ARG ALA GLY LYS THR PHE PRO SEQRES 9 B 274 SER SER PRO GLY ASP SER LEU GLU ASP GLN LEU LYS PRO SEQRES 10 B 274 MET LEU GLU TRP ALA HIS GLY GLY PHE LYS PRO THR GLY SEQRES 11 B 274 ILE GLU GLY LEU LYS PRO ASN SER GLU TYR GLN ASP GLY SEQRES 12 B 274 LYS GLU PHE GLY ILE GLY ASP LEU VAL TRP GLY LYS ILE SEQRES 13 B 274 LYS GLY PHE SER TRP TRP PRO ALA MET VAL VAL SER TRP SEQRES 14 B 274 LYS ALA THR SER LYS ARG GLN ALA MET SER GLY MET ARG SEQRES 15 B 274 TRP VAL GLN TRP PHE GLY ASP GLY LYS PHE SER GLU VAL SEQRES 16 B 274 SER ALA ASP LYS LEU VAL ALA LEU GLY LEU PHE SER GLN SEQRES 17 B 274 HIS PHE ASN LEU ALA THR PHE ASN LYS LEU VAL SER TYR SEQRES 18 B 274 ARG LYS ALA MET TYR HIS ALA LEU GLU LYS ALA ARG VAL SEQRES 19 B 274 ARG ALA GLY LYS THR PHE PRO SER SER PRO GLY ASP SER SEQRES 20 B 274 LEU GLU ASP GLN LEU LYS PRO MET LEU GLU TRP ALA HIS SEQRES 21 B 274 GLY GLY PHE LYS PRO THR GLY ILE GLU GLY LEU LYS PRO SEQRES 22 B 274 ASN HET 96H A 501 13 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 B 501 5 HET SO4 B 502 5 HETNAM 96H TRIISOPROPANOLAMINE HETNAM SO4 SULFATE ION FORMUL 3 96H C9 H21 N O3 FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *115(H2 O) HELIX 1 AA1 SER A 245 THR A 249 5 5 HELIX 2 AA2 LEU A 282 PHE A 287 1 6 HELIX 3 AA3 ASN A 288 LEU A 295 1 8 HELIX 4 AA4 LEU A 295 GLY A 314 1 20 HELIX 5 AA5 LEU A 325 GLY A 338 1 14 HELIX 6 AA6 THR A 343 LYS A 349 5 7 HELIX 7 AA7 SER B 245 THR B 249 5 5 HELIX 8 AA8 LEU B 282 PHE B 287 1 6 HELIX 9 AA9 ASN B 288 LEU B 295 1 8 HELIX 10 AB1 LEU B 295 GLY B 314 1 20 HELIX 11 AB2 GLU B 326 HIS B 337 1 12 HELIX 12 AB3 THR B 343 LYS B 349 5 7 SHEET 1 AA1 5 PHE A 269 SER A 273 0 SHEET 2 AA1 5 MET A 258 TRP A 263 -1 N ARG A 259 O VAL A 272 SHEET 3 AA1 5 TRP A 238 VAL A 244 -1 N MET A 242 O GLN A 262 SHEET 4 AA1 5 LEU A 228 LYS A 232 -1 N GLY A 231 O TRP A 239 SHEET 5 AA1 5 LEU A 277 ALA A 279 -1 O VAL A 278 N TRP A 230 SHEET 1 AA2 5 PHE B 269 SER B 273 0 SHEET 2 AA2 5 MET B 258 TRP B 263 -1 N ARG B 259 O VAL B 272 SHEET 3 AA2 5 TRP B 239 VAL B 244 -1 N MET B 242 O GLN B 262 SHEET 4 AA2 5 LEU B 228 GLY B 231 -1 N VAL B 229 O ALA B 241 SHEET 5 AA2 5 LEU B 277 ALA B 279 -1 O VAL B 278 N TRP B 230 CISPEP 1 LYS A 341 PRO A 342 0 9.42 CISPEP 2 LYS B 341 PRO B 342 0 2.95 SITE 1 AC1 6 PHE A 236 TRP A 239 TRP A 263 ASP A 266 SITE 2 AC1 6 HOH A 638 HOH A 652 SITE 1 AC2 3 ARG A 312 PRO A 350 ASN A 351 SITE 1 AC3 6 LYS A 251 ARG A 252 HOH A 609 HOH A 629 SITE 2 AC3 6 HOH A 636 HIS B 304 SITE 1 AC4 3 LYS A 234 LYS A 276 ARG B 310 SITE 1 AC5 3 LYS A 300 LYS B 251 ARG B 252 SITE 1 AC6 4 LYS B 308 ARG B 312 PRO B 350 ASN B 351 CRYST1 74.257 74.257 158.187 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013467 0.007775 0.000000 0.00000 SCALE2 0.000000 0.015550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006322 0.00000