HEADER HYDROLASE 21-MAR-19 6R3V TITLE CRYSTAL STRUCTURE OF RHOA-GDP-PI IN COMPLEX WITH RHOGAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTPASE ACTIVITING DOMAIN; COMPND 5 SYNONYM: CDC42 GTPASE-ACTIVATING PROTEIN,GTPASE-ACTIVATING PROTEIN COMPND 6 RHOGAP,RHO-RELATED SMALL GTPASE PROTEIN ACTIVATOR,RHO-TYPE GTPASE- COMPND 7 ACTIVATING PROTEIN 1,P50-RHOGAP; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: RHO CDNA CLONE 12,H12; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGAP1, CDC42GAP, RHOGAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX2T; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RHOA, ARH12, ARHA, RHO12; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS SMALL G PROTEIN, GTPASE, GTP HYDROLYSIS, PRODUCT COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIN REVDAT 4 24-JAN-24 6R3V 1 REMARK REVDAT 3 17-JUL-19 6R3V 1 JRNL REVDAT 2 10-JUL-19 6R3V 1 REMARK REVDAT 1 08-MAY-19 6R3V 0 JRNL AUTH R.W.MOLT JR.,E.PELLEGRINI,Y.JIN JRNL TITL A GAP-GTPASE-GDP-PIINTERMEDIATE CRYSTAL STRUCTURE ANALYZED JRNL TITL 2 BY DFT SHOWS GTP HYDROLYSIS INVOLVES SERIAL PROTON JRNL TITL 3 TRANSFERS. JRNL REF CHEMISTRY V. 25 8484 2019 JRNL REFN ISSN 0947-6539 JRNL PMID 31038818 JRNL DOI 10.1002/CHEM.201901627 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2927 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3053 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2925 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4154 ; 1.761 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6724 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 5.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;34.810 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;12.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;22.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3388 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 669 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 2.836 ; 3.670 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 2.836 ; 3.667 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1841 ; 3.848 ; 5.483 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 3.598 ; 4.023 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 RESIDUES 25-33 IN CHAIN B ARE DISORDERED. REMARK 4 REMARK 4 6R3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91732 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: WWPDB ENTRY 1OXT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL AMOUNTS OF RESERVOIR SOLUTION REMARK 280 CONTAINING 18% PEG2000 MME, 100 MM MES, PH 6.0, 10 MM MGCL2, 3 REMARK 280 MM DTT, 3 MM NAN3, 120 MM AMMONIUM SULPHATE AND STOCK SOLUTION REMARK 280 OF THE RHOA/RHOGAP PROTEIN COMPLEX AT 800 MM IN 20 MM TRIS.HCL, REMARK 280 PH 7.4, WITH 2 MM ALCL3, 10 MM MGCL2, AND 20 MM NAF., PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.59500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.03000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.39000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.59500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.03000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.39000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -196 REMARK 465 ASP A -195 REMARK 465 PRO A -194 REMARK 465 LEU A -193 REMARK 465 SER A -192 REMARK 465 GLU A -191 REMARK 465 LEU A -190 REMARK 465 GLN A -189 REMARK 465 ASP A -188 REMARK 465 ASP A -187 REMARK 465 LEU A -186 REMARK 465 THR A -185 REMARK 465 LEU A -184 REMARK 465 ASP A -183 REMARK 465 ASP A -182 REMARK 465 THR A -181 REMARK 465 SER A -180 REMARK 465 GLU A -179 REMARK 465 ALA A -178 REMARK 465 LEU A -177 REMARK 465 ASN A -176 REMARK 465 GLN A -175 REMARK 465 LEU A -174 REMARK 465 LYS A -173 REMARK 465 LEU A -172 REMARK 465 ALA A -171 REMARK 465 SER A -170 REMARK 465 ILE A -169 REMARK 465 ASP A -168 REMARK 465 GLU A -167 REMARK 465 LYS A -166 REMARK 465 ASN A -165 REMARK 465 TRP A -164 REMARK 465 PRO A -163 REMARK 465 SER A -162 REMARK 465 ASP A -161 REMARK 465 GLU A -160 REMARK 465 MET A -159 REMARK 465 PRO A -158 REMARK 465 ASP A -157 REMARK 465 PHE A -156 REMARK 465 PRO A -155 REMARK 465 LYS A -154 REMARK 465 SER A -153 REMARK 465 ASP A -152 REMARK 465 ASP A -151 REMARK 465 SER A -150 REMARK 465 LYS A -149 REMARK 465 SER A -148 REMARK 465 SER A -147 REMARK 465 SER A -146 REMARK 465 PRO A -145 REMARK 465 GLU A -144 REMARK 465 LEU A -143 REMARK 465 VAL A -142 REMARK 465 THR A -141 REMARK 465 HIS A -140 REMARK 465 LEU A -139 REMARK 465 LYS A -138 REMARK 465 TRP A -137 REMARK 465 ASP A -136 REMARK 465 ASP A -135 REMARK 465 PRO A -134 REMARK 465 TYR A -133 REMARK 465 TYR A -132 REMARK 465 ASP A -131 REMARK 465 ILE A -130 REMARK 465 ALA A -129 REMARK 465 ARG A -128 REMARK 465 HIS A -127 REMARK 465 GLN A -126 REMARK 465 ILE A -125 REMARK 465 VAL A -124 REMARK 465 GLU A -123 REMARK 465 VAL A -122 REMARK 465 ALA A -121 REMARK 465 GLY A -120 REMARK 465 ASP A -119 REMARK 465 ASP A -118 REMARK 465 LYS A -117 REMARK 465 TYR A -116 REMARK 465 GLY A -115 REMARK 465 ARG A -114 REMARK 465 LYS A -113 REMARK 465 ILE A -112 REMARK 465 ILE A -111 REMARK 465 VAL A -110 REMARK 465 PHE A -109 REMARK 465 SER A -108 REMARK 465 ALA A -107 REMARK 465 CYS A -106 REMARK 465 ARG A -105 REMARK 465 MET A -104 REMARK 465 PRO A -103 REMARK 465 PRO A -102 REMARK 465 SER A -101 REMARK 465 HIS A -100 REMARK 465 GLN A -99 REMARK 465 LEU A -98 REMARK 465 ASP A -97 REMARK 465 HIS A -96 REMARK 465 SER A -95 REMARK 465 LYS A -94 REMARK 465 LEU A -93 REMARK 465 LEU A -92 REMARK 465 GLY A -91 REMARK 465 TYR A -90 REMARK 465 LEU A -89 REMARK 465 LYS A -88 REMARK 465 HIS A -87 REMARK 465 THR A -86 REMARK 465 LEU A -85 REMARK 465 ASP A -84 REMARK 465 GLN A -83 REMARK 465 TYR A -82 REMARK 465 VAL A -81 REMARK 465 GLU A -80 REMARK 465 SER A -79 REMARK 465 ASP A -78 REMARK 465 TYR A -77 REMARK 465 THR A -76 REMARK 465 LEU A -75 REMARK 465 LEU A -74 REMARK 465 TYR A -73 REMARK 465 LEU A -72 REMARK 465 HIS A -71 REMARK 465 HIS A -70 REMARK 465 GLY A -69 REMARK 465 LEU A -68 REMARK 465 THR A -67 REMARK 465 SER A -66 REMARK 465 ASP A -65 REMARK 465 ASN A -64 REMARK 465 LYS A -63 REMARK 465 PRO A -62 REMARK 465 SER A -61 REMARK 465 LEU A -60 REMARK 465 SER A -59 REMARK 465 TRP A -58 REMARK 465 LEU A -57 REMARK 465 ARG A -56 REMARK 465 ASP A -55 REMARK 465 ALA A -54 REMARK 465 TYR A -53 REMARK 465 ARG A -52 REMARK 465 GLU A -51 REMARK 465 PHE A -50 REMARK 465 ASP A -49 REMARK 465 ARG A -48 REMARK 465 LYS A -47 REMARK 465 TYR A -46 REMARK 465 LYS A -45 REMARK 465 LYS A -44 REMARK 465 ASN A -43 REMARK 465 ILE A -42 REMARK 465 LYS A -41 REMARK 465 ALA A -40 REMARK 465 LEU A -39 REMARK 465 TYR A -38 REMARK 465 ILE A -37 REMARK 465 VAL A -36 REMARK 465 HIS A -35 REMARK 465 PRO A -34 REMARK 465 THR A -33 REMARK 465 MET A -32 REMARK 465 PHE A -31 REMARK 465 ILE A -30 REMARK 465 LYS A -29 REMARK 465 THR A -28 REMARK 465 LEU A -27 REMARK 465 LEU A -26 REMARK 465 ILE A -25 REMARK 465 LEU A -24 REMARK 465 PHE A -23 REMARK 465 LYS A -22 REMARK 465 PRO A -21 REMARK 465 LEU A -20 REMARK 465 ILE A -19 REMARK 465 SER A -18 REMARK 465 PHE A -17 REMARK 465 LYS A -16 REMARK 465 PHE A -15 REMARK 465 GLY A -14 REMARK 465 GLN A -13 REMARK 465 LYS A -12 REMARK 465 ILE A -11 REMARK 465 PHE A -10 REMARK 465 TYR A -9 REMARK 465 VAL A -8 REMARK 465 ASN A -7 REMARK 465 TYR A -6 REMARK 465 LEU A -5 REMARK 465 SER A -4 REMARK 465 GLU A -3 REMARK 465 LEU A -2 REMARK 465 SER A -1 REMARK 465 GLU A 0 REMARK 465 HIS A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 TYR A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 PHE A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 GLN A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 PRO A 33 REMARK 465 MET A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 SER A 236 REMARK 465 PRO A 237 REMARK 465 ASP A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 GLY A 241 REMARK 465 LEU A 242 REMARK 465 MET B 1 REMARK 465 PHE B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 ASP B 28 REMARK 465 GLN B 29 REMARK 465 PHE B 30 REMARK 465 PRO B 31 REMARK 465 GLU B 32 REMARK 465 VAL B 33 REMARK 465 ARG B 183 REMARK 465 GLY B 184 REMARK 465 LYS B 185 REMARK 465 LYS B 186 REMARK 465 LYS B 187 REMARK 465 SER B 188 REMARK 465 GLY B 189 REMARK 465 CYS B 190 REMARK 465 LEU B 191 REMARK 465 VAL B 192 REMARK 465 LEU B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 LYS A 55 CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 GLU A 149 CD OE1 OE2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 -9.23 80.93 REMARK 500 THR A 134 150.77 78.99 REMARK 500 VAL B 38 -84.89 -97.78 REMARK 500 LYS B 98 -59.72 -122.58 REMARK 500 LYS B 164 -0.04 68.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 THR B 37 OG1 76.6 REMARK 620 3 GDP B 202 O1B 92.0 163.0 REMARK 620 4 PO4 B 204 O3 170.5 95.4 96.9 REMARK 620 5 HOH B 303 O 87.3 85.1 81.8 97.1 REMARK 620 6 HOH B 308 O 84.4 94.0 97.4 91.3 171.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 205 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE GAP MOTIF FROM RESIDUE 198 TO 439 IS USED FOR REMARK 999 CRYSTALLISATION. DBREF 6R3V A -196 242 UNP Q07960 RHG01_HUMAN 1 439 DBREF 6R3V B 1 193 UNP P61586 RHOA_HUMAN 1 193 SEQRES 1 A 439 MET ASP PRO LEU SER GLU LEU GLN ASP ASP LEU THR LEU SEQRES 2 A 439 ASP ASP THR SER GLU ALA LEU ASN GLN LEU LYS LEU ALA SEQRES 3 A 439 SER ILE ASP GLU LYS ASN TRP PRO SER ASP GLU MET PRO SEQRES 4 A 439 ASP PHE PRO LYS SER ASP ASP SER LYS SER SER SER PRO SEQRES 5 A 439 GLU LEU VAL THR HIS LEU LYS TRP ASP ASP PRO TYR TYR SEQRES 6 A 439 ASP ILE ALA ARG HIS GLN ILE VAL GLU VAL ALA GLY ASP SEQRES 7 A 439 ASP LYS TYR GLY ARG LYS ILE ILE VAL PHE SER ALA CYS SEQRES 8 A 439 ARG MET PRO PRO SER HIS GLN LEU ASP HIS SER LYS LEU SEQRES 9 A 439 LEU GLY TYR LEU LYS HIS THR LEU ASP GLN TYR VAL GLU SEQRES 10 A 439 SER ASP TYR THR LEU LEU TYR LEU HIS HIS GLY LEU THR SEQRES 11 A 439 SER ASP ASN LYS PRO SER LEU SER TRP LEU ARG ASP ALA SEQRES 12 A 439 TYR ARG GLU PHE ASP ARG LYS TYR LYS LYS ASN ILE LYS SEQRES 13 A 439 ALA LEU TYR ILE VAL HIS PRO THR MET PHE ILE LYS THR SEQRES 14 A 439 LEU LEU ILE LEU PHE LYS PRO LEU ILE SER PHE LYS PHE SEQRES 15 A 439 GLY GLN LYS ILE PHE TYR VAL ASN TYR LEU SER GLU LEU SEQRES 16 A 439 SER GLU HIS VAL LYS LEU GLU GLN LEU GLY ILE PRO ARG SEQRES 17 A 439 GLN VAL LEU LYS TYR ASP ASP PHE LEU LYS SER THR GLN SEQRES 18 A 439 LYS SER PRO ALA THR ALA PRO LYS PRO MET PRO PRO ARG SEQRES 19 A 439 PRO PRO LEU PRO ASN GLN GLN PHE GLY VAL SER LEU GLN SEQRES 20 A 439 HIS LEU GLN GLU LYS ASN PRO GLU GLN GLU PRO ILE PRO SEQRES 21 A 439 ILE VAL LEU ARG GLU THR VAL ALA TYR LEU GLN ALA HIS SEQRES 22 A 439 ALA LEU THR THR GLU GLY ILE PHE ARG ARG SER ALA ASN SEQRES 23 A 439 THR GLN VAL VAL ARG GLU VAL GLN GLN LYS TYR ASN MET SEQRES 24 A 439 GLY LEU PRO VAL ASP PHE ASP GLN TYR ASN GLU LEU HIS SEQRES 25 A 439 LEU PRO ALA VAL ILE LEU LYS THR PHE LEU ARG GLU LEU SEQRES 26 A 439 PRO GLU PRO LEU LEU THR PHE ASP LEU TYR PRO HIS VAL SEQRES 27 A 439 VAL GLY PHE LEU ASN ILE ASP GLU SER GLN ARG VAL PRO SEQRES 28 A 439 ALA THR LEU GLN VAL LEU GLN THR LEU PRO GLU GLU ASN SEQRES 29 A 439 TYR GLN VAL LEU ARG PHE LEU THR ALA PHE LEU VAL GLN SEQRES 30 A 439 ILE SER ALA HIS SER ASP GLN ASN LYS MET THR ASN THR SEQRES 31 A 439 ASN LEU ALA VAL VAL PHE GLY PRO ASN LEU LEU TRP ALA SEQRES 32 A 439 LYS ASP ALA ALA ILE THR LEU LYS ALA ILE ASN PRO ILE SEQRES 33 A 439 ASN THR PHE THR LYS PHE LEU LEU ASP HIS GLN GLY GLU SEQRES 34 A 439 LEU PHE PRO SER PRO ASP PRO SER GLY LEU SEQRES 1 B 193 MET ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP SEQRES 2 B 193 GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL PHE SER SEQRES 3 B 193 LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE SEQRES 4 B 193 GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN SEQRES 5 B 193 VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 B 193 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP SEQRES 7 B 193 VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER SEQRES 8 B 193 LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS SEQRES 9 B 193 HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN SEQRES 10 B 193 LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU SEQRES 11 B 193 LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU SEQRES 12 B 193 GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR SEQRES 13 B 193 MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU SEQRES 14 B 193 VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN ALA ARG SEQRES 15 B 193 ARG GLY LYS LYS LYS SER GLY CYS LEU VAL LEU HET PO4 A 301 5 HET MES B 201 12 HET GDP B 202 28 HET MG B 203 1 HET PO4 B 204 5 HET DTT B 205 8 HETNAM PO4 PHOSPHATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MES C6 H13 N O4 S FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 MG MG 2+ FORMUL 8 DTT C4 H10 O2 S2 FORMUL 9 HOH *254(H2 O) HELIX 1 AA1 SER A 48 ASN A 56 1 9 HELIX 2 AA2 PRO A 63 ALA A 77 1 15 HELIX 3 AA3 ASN A 89 MET A 102 1 14 HELIX 4 AA4 ASP A 107 TYR A 111 5 5 HELIX 5 AA5 LEU A 114 LEU A 128 1 15 HELIX 6 AA6 THR A 134 ASP A 136 5 3 HELIX 7 AA7 LEU A 137 GLY A 143 1 7 HELIX 8 AA8 PHE A 144 ILE A 147 5 4 HELIX 9 AA9 ASP A 148 SER A 150 5 3 HELIX 10 AB1 GLN A 151 GLN A 161 1 11 HELIX 11 AB2 PRO A 164 HIS A 184 1 21 HELIX 12 AB3 HIS A 184 LYS A 189 1 6 HELIX 13 AB4 THR A 191 LEU A 204 1 14 HELIX 14 AB5 ASP A 208 ALA A 215 1 8 HELIX 15 AB6 ALA A 215 HIS A 229 1 15 HELIX 16 AB7 HIS A 229 PHE A 234 1 6 HELIX 17 AB8 GLY B 17 VAL B 24 1 8 HELIX 18 AB9 GLN B 63 ASP B 67 5 5 HELIX 19 AC1 LEU B 69 TYR B 74 5 6 HELIX 20 AC2 SER B 88 LYS B 98 1 11 HELIX 21 AC3 LYS B 98 CYS B 107 1 10 HELIX 22 AC4 LYS B 118 ARG B 122 5 5 HELIX 23 AC5 ASP B 124 LYS B 133 1 10 HELIX 24 AC6 LYS B 140 GLY B 152 1 13 HELIX 25 AC7 GLY B 166 GLN B 180 1 15 SHEET 1 AA1 6 GLU B 40 VAL B 48 0 SHEET 2 AA1 6 LYS B 51 ASP B 59 -1 O LEU B 55 N ALA B 44 SHEET 3 AA1 6 ILE B 4 GLY B 12 1 N LEU B 8 O ALA B 56 SHEET 4 AA1 6 VAL B 79 SER B 85 1 O CYS B 83 N VAL B 11 SHEET 5 AA1 6 ILE B 112 ASN B 117 1 O ILE B 113 N ILE B 80 SHEET 6 AA1 6 GLY B 155 GLU B 158 1 O GLY B 155 N LEU B 114 LINK SG CYS B 107 S1 DTT B 205 1555 1555 2.16 LINK OG1 THR B 19 MG MG B 203 1555 1555 2.08 LINK OG1 THR B 37 MG MG B 203 1555 1555 2.07 LINK O1B GDP B 202 MG MG B 203 1555 1555 1.95 LINK MG MG B 203 O3 PO4 B 204 1555 1555 1.95 LINK MG MG B 203 O HOH B 303 1555 1555 2.22 LINK MG MG B 203 O HOH B 308 1555 1555 2.06 SITE 1 AC1 4 ARG A 67 GLU A 68 HOH A 402 HOH A 452 SITE 1 AC2 5 ALA B 148 ASN B 149 ALA B 153 GLY B 155 SITE 2 AC2 5 TYR B 156 SITE 1 AC3 22 ARG A 85 ALA B 15 CYS B 16 GLY B 17 SITE 2 AC3 22 LYS B 18 THR B 19 CYS B 20 TYR B 34 SITE 3 AC3 22 LYS B 118 ASP B 120 LEU B 121 SER B 160 SITE 4 AC3 22 ALA B 161 LYS B 162 MG B 203 PO4 B 204 SITE 5 AC3 22 HOH B 303 HOH B 305 HOH B 308 HOH B 335 SITE 6 AC3 22 HOH B 370 HOH B 390 SITE 1 AC4 6 THR B 19 THR B 37 GDP B 202 PO4 B 204 SITE 2 AC4 6 HOH B 303 HOH B 308 SITE 1 AC5 10 ARG A 85 ALA B 15 LYS B 18 THR B 37 SITE 2 AC5 10 ALA B 61 GLY B 62 GLN B 63 GDP B 202 SITE 3 AC5 10 MG B 203 HOH B 308 SITE 1 AC6 6 TYR B 74 PHE B 106 CYS B 107 VAL B 110 SITE 2 AC6 6 HOH B 301 HOH B 399 CRYST1 114.060 122.780 67.190 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014883 0.00000