HEADER LIPID TRANSPORT 22-MAR-19 6R4M TITLE CRYSTAL STRUCTURE OF S. CEREVISIA NIEMANN-PICK TYPE C PROTEIN NPC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLGLYCEROL/PHOSPHATIDYLINOSITOL TRANSFER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PG/PI-TP,NPC2 HOMOLOG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: NPC2, YDL046W, D2699; SOURCE 8 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: DSY-5; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P423_GAL1 KEYWDS VACUOLE, ERGOSTEROL, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.B.L.WINKLER,R.T.KIDMOSE,B.P.PEDERSEN REVDAT 4 29-JUL-20 6R4M 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 16-OCT-19 6R4M 1 JRNL REVDAT 2 02-OCT-19 6R4M 1 JRNL REVDAT 1 25-SEP-19 6R4M 0 JRNL AUTH M.B.L.WINKLER,R.T.KIDMOSE,M.SZOMEK,K.THAYSEN,S.RAWSON, JRNL AUTH 2 S.P.MUENCH,D.WUSTNER,B.P.PEDERSEN JRNL TITL STRUCTURAL INSIGHT INTO EUKARYOTIC STEROL TRANSPORT THROUGH JRNL TITL 2 NIEMANN-PICK TYPE C PROTEINS. JRNL REF CELL V. 179 485 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31543266 JRNL DOI 10.1016/J.CELL.2019.08.038 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4587 - 5.8203 0.99 2641 140 0.2286 0.2439 REMARK 3 2 5.8203 - 4.6213 0.98 2515 133 0.2056 0.2292 REMARK 3 3 4.6213 - 4.0376 0.99 2509 130 0.2086 0.2300 REMARK 3 4 4.0376 - 3.6686 1.00 2496 132 0.2342 0.2609 REMARK 3 5 3.6686 - 3.4058 1.00 2518 135 0.2540 0.3057 REMARK 3 6 3.4058 - 3.2050 1.00 2474 133 0.2686 0.2872 REMARK 3 7 3.2050 - 3.0446 1.00 2492 132 0.3000 0.3739 REMARK 3 8 3.0446 - 2.9121 1.00 2500 132 0.3463 0.3697 REMARK 3 9 2.9121 - 2.8000 0.99 2434 128 0.3645 0.3994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3510 REMARK 3 ANGLE : 1.249 4806 REMARK 3 CHIRALITY : 0.066 564 REMARK 3 PLANARITY : 0.012 638 REMARK 3 DIHEDRAL : 10.975 2163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 24 THROUGH 175) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0279 -87.1423 -4.4215 REMARK 3 T TENSOR REMARK 3 T11: 0.7054 T22: 0.9076 REMARK 3 T33: 0.6581 T12: 0.0344 REMARK 3 T13: 0.0298 T23: 0.1107 REMARK 3 L TENSOR REMARK 3 L11: 3.0649 L22: 3.6595 REMARK 3 L33: 3.2844 L12: -0.5824 REMARK 3 L13: 0.7715 L23: 0.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: 0.0173 S13: 0.1215 REMARK 3 S21: -0.0609 S22: -0.1592 S23: -0.6062 REMARK 3 S31: 0.2268 S32: -0.0099 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 30 THROUGH 175) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3211 -55.9671 0.8897 REMARK 3 T TENSOR REMARK 3 T11: 1.0515 T22: 0.9695 REMARK 3 T33: 0.9472 T12: 0.2311 REMARK 3 T13: -0.1528 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 2.9261 L22: 6.4676 REMARK 3 L33: 3.6324 L12: 0.8233 REMARK 3 L13: 1.1203 L23: -0.7541 REMARK 3 S TENSOR REMARK 3 S11: -0.2940 S12: -0.3900 S13: 0.7603 REMARK 3 S21: -0.1229 S22: -0.0668 S23: 0.5343 REMARK 3 S31: -0.9218 S32: -0.4713 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 31 THROUGH 175) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4530 -65.1767 5.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.9719 T22: 1.1822 REMARK 3 T33: 1.4988 T12: -0.0792 REMARK 3 T13: -0.4530 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.9170 L22: 3.4282 REMARK 3 L33: 2.2606 L12: -0.1739 REMARK 3 L13: -1.3233 L23: -1.1390 REMARK 3 S TENSOR REMARK 3 S11: 0.1724 S12: -0.4740 S13: 0.2711 REMARK 3 S21: 0.2288 S22: -0.1192 S23: -0.8014 REMARK 3 S31: -0.0698 S32: 0.4501 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN B AND RESID 31 THROUGH 172) REMARK 3 ATOM PAIRS NUMBER : 2098 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN C AND RESID 31 THROUGH 172) REMARK 3 ATOM PAIRS NUMBER : 2098 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20180808 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.453 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.23 REMARK 200 R MERGE FOR SHELL (I) : 1.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUMCITRATE DIBASIC, PEG 3350, PH REMARK 280 5.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.05333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.54000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.56667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 6.51333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PHE A 13 REMARK 465 LEU A 14 REMARK 465 TYR A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 ILE A 24 REMARK 465 GLY A 25 REMARK 465 ILE A 26 REMARK 465 PHE A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 29 REMARK 465 LEU A 30 REMARK 465 ARG A 173 REMARK 465 LEU A 174 REMARK 465 VAL A 175 REMARK 465 PRO A 176 REMARK 465 ARG A 177 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 SER A 184 REMARK 465 GLY A 185 REMARK 465 GLY A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 GLY A 190 REMARK 465 GLY A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 PHE B 9 REMARK 465 ALA B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 PHE B 13 REMARK 465 LEU B 14 REMARK 465 TYR B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 VAL B 19 REMARK 465 ASN B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 VAL B 23 REMARK 465 ILE B 24 REMARK 465 GLY B 25 REMARK 465 ILE B 26 REMARK 465 PHE B 27 REMARK 465 ASN B 28 REMARK 465 ALA B 29 REMARK 465 ARG B 173 REMARK 465 LEU B 174 REMARK 465 VAL B 175 REMARK 465 PRO B 176 REMARK 465 ARG B 177 REMARK 465 GLY B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 GLY B 181 REMARK 465 GLY B 182 REMARK 465 GLY B 183 REMARK 465 SER B 184 REMARK 465 GLY B 185 REMARK 465 GLY B 186 REMARK 465 GLY B 187 REMARK 465 GLY B 188 REMARK 465 SER B 189 REMARK 465 GLY B 190 REMARK 465 GLY B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 HIS C 3 REMARK 465 SER C 4 REMARK 465 LEU C 5 REMARK 465 LYS C 6 REMARK 465 ALA C 7 REMARK 465 LEU C 8 REMARK 465 PHE C 9 REMARK 465 ALA C 10 REMARK 465 LEU C 11 REMARK 465 LEU C 12 REMARK 465 PHE C 13 REMARK 465 LEU C 14 REMARK 465 TYR C 15 REMARK 465 THR C 16 REMARK 465 ALA C 17 REMARK 465 ALA C 18 REMARK 465 VAL C 19 REMARK 465 ASN C 20 REMARK 465 ALA C 21 REMARK 465 GLY C 22 REMARK 465 VAL C 23 REMARK 465 LEU C 174 REMARK 465 VAL C 175 REMARK 465 PRO C 176 REMARK 465 ARG C 177 REMARK 465 GLY C 178 REMARK 465 SER C 179 REMARK 465 GLY C 180 REMARK 465 GLY C 181 REMARK 465 GLY C 182 REMARK 465 GLY C 183 REMARK 465 SER C 184 REMARK 465 GLY C 185 REMARK 465 GLY C 186 REMARK 465 GLY C 187 REMARK 465 GLY C 188 REMARK 465 SER C 189 REMARK 465 GLY C 190 REMARK 465 GLY C 191 REMARK 465 HIS C 192 REMARK 465 HIS C 193 REMARK 465 HIS C 194 REMARK 465 HIS C 195 REMARK 465 HIS C 196 REMARK 465 HIS C 197 REMARK 465 HIS C 198 REMARK 465 HIS C 199 REMARK 465 HIS C 200 REMARK 465 HIS C 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 119 N LYS C 133 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 157 OE2 GLU C 41 1556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 121 54.38 -100.96 REMARK 500 ILE C 26 22.87 -27.88 REMARK 500 PHE C 27 146.49 -36.01 REMARK 500 LEU C 121 44.05 35.54 REMARK 500 PRO C 124 93.41 -69.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 25 ILE C 26 -140.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 6R4M A 1 173 UNP Q12408 NPC2_YEAST 1 173 DBREF 6R4M B 1 173 UNP Q12408 NPC2_YEAST 1 173 DBREF 6R4M C 1 173 UNP Q12408 NPC2_YEAST 1 173 SEQADV 6R4M LEU A 174 UNP Q12408 EXPRESSION TAG SEQADV 6R4M VAL A 175 UNP Q12408 EXPRESSION TAG SEQADV 6R4M PRO A 176 UNP Q12408 EXPRESSION TAG SEQADV 6R4M ARG A 177 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 178 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER A 179 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 180 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 181 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 182 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 183 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER A 184 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 185 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 186 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 187 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 188 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER A 189 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 190 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY A 191 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 192 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 193 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 194 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 195 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 196 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 197 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 198 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 199 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 200 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS A 201 UNP Q12408 EXPRESSION TAG SEQADV 6R4M LEU B 174 UNP Q12408 EXPRESSION TAG SEQADV 6R4M VAL B 175 UNP Q12408 EXPRESSION TAG SEQADV 6R4M PRO B 176 UNP Q12408 EXPRESSION TAG SEQADV 6R4M ARG B 177 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 178 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER B 179 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 180 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 181 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 182 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 183 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER B 184 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 185 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 186 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 187 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 188 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER B 189 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 190 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY B 191 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 192 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 193 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 194 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 195 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 196 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 197 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 198 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 199 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 200 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS B 201 UNP Q12408 EXPRESSION TAG SEQADV 6R4M LEU C 174 UNP Q12408 EXPRESSION TAG SEQADV 6R4M VAL C 175 UNP Q12408 EXPRESSION TAG SEQADV 6R4M PRO C 176 UNP Q12408 EXPRESSION TAG SEQADV 6R4M ARG C 177 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 178 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER C 179 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 180 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 181 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 182 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 183 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER C 184 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 185 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 186 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 187 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 188 UNP Q12408 EXPRESSION TAG SEQADV 6R4M SER C 189 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 190 UNP Q12408 EXPRESSION TAG SEQADV 6R4M GLY C 191 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 192 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 193 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 194 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 195 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 196 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 197 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 198 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 199 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 200 UNP Q12408 EXPRESSION TAG SEQADV 6R4M HIS C 201 UNP Q12408 EXPRESSION TAG SEQRES 1 A 201 MET THR HIS SER LEU LYS ALA LEU PHE ALA LEU LEU PHE SEQRES 2 A 201 LEU TYR THR ALA ALA VAL ASN ALA GLY VAL ILE GLY ILE SEQRES 3 A 201 PHE ASN ALA LEU PRO PRO PRO ASN THR LYS PRO ILE ASN SEQRES 4 A 201 GLY GLU SER PRO LEU TYR GLN CYS ASP ILE LEU ASP LYS SEQRES 5 A 201 GLN LEU VAL GLU ILE LYS GLU VAL ASN LEU ASP PRO ASN SEQRES 6 A 201 PRO PRO VAL ARG GLY GLU ASN LEU THR ILE SER ALA ASN SEQRES 7 A 201 GLY GLU VAL PHE GLU THR ILE GLU GLU GLY ALA TYR ILE SEQRES 8 A 201 ASP VAL GLU VAL ARG LEU GLY TYR ILE ARG LEU LEU SER SEQRES 9 A 201 GLN THR PHE ASP LEU CYS GLU THR LEU GLU ASP ASN ASP SEQRES 10 A 201 ILE GLU GLY LEU SER CYS PRO ILE GLU PRO GLY GLU TYR SEQRES 11 A 201 ASN ILE LYS LYS ILE VAL GLU ILE PRO GLY GLU VAL PRO SEQRES 12 A 201 PRO GLY LYS TYR VAL VAL VAL ALA ARG ALA TYR THR GLU SEQRES 13 A 201 LYS ASP ASP LEU ILE THR CYS LEU THR GLY GLU VAL ILE SEQRES 14 A 201 PHE PRO PRO ARG LEU VAL PRO ARG GLY SER GLY GLY GLY SEQRES 15 A 201 GLY SER GLY GLY GLY GLY SER GLY GLY HIS HIS HIS HIS SEQRES 16 A 201 HIS HIS HIS HIS HIS HIS SEQRES 1 B 201 MET THR HIS SER LEU LYS ALA LEU PHE ALA LEU LEU PHE SEQRES 2 B 201 LEU TYR THR ALA ALA VAL ASN ALA GLY VAL ILE GLY ILE SEQRES 3 B 201 PHE ASN ALA LEU PRO PRO PRO ASN THR LYS PRO ILE ASN SEQRES 4 B 201 GLY GLU SER PRO LEU TYR GLN CYS ASP ILE LEU ASP LYS SEQRES 5 B 201 GLN LEU VAL GLU ILE LYS GLU VAL ASN LEU ASP PRO ASN SEQRES 6 B 201 PRO PRO VAL ARG GLY GLU ASN LEU THR ILE SER ALA ASN SEQRES 7 B 201 GLY GLU VAL PHE GLU THR ILE GLU GLU GLY ALA TYR ILE SEQRES 8 B 201 ASP VAL GLU VAL ARG LEU GLY TYR ILE ARG LEU LEU SER SEQRES 9 B 201 GLN THR PHE ASP LEU CYS GLU THR LEU GLU ASP ASN ASP SEQRES 10 B 201 ILE GLU GLY LEU SER CYS PRO ILE GLU PRO GLY GLU TYR SEQRES 11 B 201 ASN ILE LYS LYS ILE VAL GLU ILE PRO GLY GLU VAL PRO SEQRES 12 B 201 PRO GLY LYS TYR VAL VAL VAL ALA ARG ALA TYR THR GLU SEQRES 13 B 201 LYS ASP ASP LEU ILE THR CYS LEU THR GLY GLU VAL ILE SEQRES 14 B 201 PHE PRO PRO ARG LEU VAL PRO ARG GLY SER GLY GLY GLY SEQRES 15 B 201 GLY SER GLY GLY GLY GLY SER GLY GLY HIS HIS HIS HIS SEQRES 16 B 201 HIS HIS HIS HIS HIS HIS SEQRES 1 C 201 MET THR HIS SER LEU LYS ALA LEU PHE ALA LEU LEU PHE SEQRES 2 C 201 LEU TYR THR ALA ALA VAL ASN ALA GLY VAL ILE GLY ILE SEQRES 3 C 201 PHE ASN ALA LEU PRO PRO PRO ASN THR LYS PRO ILE ASN SEQRES 4 C 201 GLY GLU SER PRO LEU TYR GLN CYS ASP ILE LEU ASP LYS SEQRES 5 C 201 GLN LEU VAL GLU ILE LYS GLU VAL ASN LEU ASP PRO ASN SEQRES 6 C 201 PRO PRO VAL ARG GLY GLU ASN LEU THR ILE SER ALA ASN SEQRES 7 C 201 GLY GLU VAL PHE GLU THR ILE GLU GLU GLY ALA TYR ILE SEQRES 8 C 201 ASP VAL GLU VAL ARG LEU GLY TYR ILE ARG LEU LEU SER SEQRES 9 C 201 GLN THR PHE ASP LEU CYS GLU THR LEU GLU ASP ASN ASP SEQRES 10 C 201 ILE GLU GLY LEU SER CYS PRO ILE GLU PRO GLY GLU TYR SEQRES 11 C 201 ASN ILE LYS LYS ILE VAL GLU ILE PRO GLY GLU VAL PRO SEQRES 12 C 201 PRO GLY LYS TYR VAL VAL VAL ALA ARG ALA TYR THR GLU SEQRES 13 C 201 LYS ASP ASP LEU ILE THR CYS LEU THR GLY GLU VAL ILE SEQRES 14 C 201 PHE PRO PRO ARG LEU VAL PRO ARG GLY SER GLY GLY GLY SEQRES 15 C 201 GLY SER GLY GLY GLY GLY SER GLY GLY HIS HIS HIS HIS SEQRES 16 C 201 HIS HIS HIS HIS HIS HIS HET NAG A 301 14 HET NAG B 301 14 HET NAG C 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 4 NAG 3(C8 H15 N O6) HELIX 1 AA1 LEU A 109 ASN A 116 1 8 HELIX 2 AA2 LEU B 109 ASN B 116 1 8 HELIX 3 AA3 LEU C 109 ASN C 116 1 8 SHEET 1 AA1 6 THR A 35 PRO A 37 0 SHEET 2 AA1 6 TYR A 45 CYS A 47 -1 O GLN A 46 N LYS A 36 SHEET 3 AA1 6 LEU A 160 PHE A 170 -1 O THR A 165 N TYR A 45 SHEET 4 AA1 6 GLY A 145 TYR A 154 -1 N ALA A 153 O ILE A 161 SHEET 5 AA1 6 TYR A 90 LEU A 97 -1 N ASP A 92 O ARG A 152 SHEET 6 AA1 6 ILE A 100 ASP A 108 -1 O GLN A 105 N VAL A 93 SHEET 1 AA2 3 VAL A 55 LEU A 62 0 SHEET 2 AA2 3 ASN A 72 VAL A 81 -1 O SER A 76 N ASN A 61 SHEET 3 AA2 3 GLY A 128 GLU A 137 -1 O VAL A 136 N LEU A 73 SHEET 1 AA3 6 LYS B 36 PRO B 37 0 SHEET 2 AA3 6 TYR B 45 GLN B 46 -1 O GLN B 46 N LYS B 36 SHEET 3 AA3 6 LEU B 160 PHE B 170 -1 O THR B 165 N TYR B 45 SHEET 4 AA3 6 GLY B 145 TYR B 154 -1 N ALA B 153 O ILE B 161 SHEET 5 AA3 6 TYR B 90 LEU B 97 -1 N ASP B 92 O ARG B 152 SHEET 6 AA3 6 ILE B 100 ASP B 108 -1 O ILE B 100 N LEU B 97 SHEET 1 AA4 3 VAL B 55 LEU B 62 0 SHEET 2 AA4 3 ASN B 72 VAL B 81 -1 O SER B 76 N ASN B 61 SHEET 3 AA4 3 GLY B 128 GLU B 137 -1 O TYR B 130 N GLY B 79 SHEET 1 AA5 6 THR C 35 PRO C 37 0 SHEET 2 AA5 6 TYR C 45 CYS C 47 -1 O GLN C 46 N LYS C 36 SHEET 3 AA5 6 LEU C 160 PHE C 170 -1 O THR C 165 N TYR C 45 SHEET 4 AA5 6 GLY C 145 TYR C 154 -1 N ALA C 153 O ILE C 161 SHEET 5 AA5 6 TYR C 90 LEU C 97 -1 N ASP C 92 O ARG C 152 SHEET 6 AA5 6 ILE C 100 ASP C 108 -1 O LEU C 103 N VAL C 95 SHEET 1 AA6 3 VAL C 55 LEU C 62 0 SHEET 2 AA6 3 ASN C 72 VAL C 81 -1 O SER C 76 N ASN C 61 SHEET 3 AA6 3 GLY C 128 GLU C 137 -1 O LYS C 134 N ILE C 75 SSBOND 1 CYS A 47 CYS A 163 1555 1555 2.04 SSBOND 2 CYS A 110 CYS A 123 1555 1555 2.03 SSBOND 3 CYS B 47 CYS B 163 1555 1555 2.04 SSBOND 4 CYS B 110 CYS B 123 1555 1555 2.02 SSBOND 5 CYS C 47 CYS C 163 1555 1555 2.03 SSBOND 6 CYS C 110 CYS C 123 1555 1555 2.00 LINK ND2 ASN A 72 C1 NAG A 301 1555 1555 1.47 LINK ND2 ASN B 72 C1 NAG B 301 1555 1555 1.46 LINK ND2 ASN C 72 C1 NAG C 301 1555 1555 1.45 CRYST1 205.320 205.320 39.080 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004870 0.002812 0.000000 0.00000 SCALE2 0.000000 0.005624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025589 0.00000