HEADER VIRAL PROTEIN 25-MAR-19 6R5W TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING PROTEIN (GP15) OF LISTERIA TITLE 2 PHAGE PSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP15 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA PHAGE PSA; SOURCE 3 ORGANISM_TAXID: 171618; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS LISTERIA, HOMOTRIMERIC, RECEPTOR BINDING PROTEIN, BACTERIOPHAGE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DUNNE,P.ERNST,A.PLUCKTHUN,M.J.LOESSNER,S.KILCHER REVDAT 3 15-MAY-24 6R5W 1 LINK REVDAT 2 06-NOV-19 6R5W 1 JRNL REVDAT 1 30-OCT-19 6R5W 0 JRNL AUTH M.DUNNE,B.RUPF,M.TALA,X.QABRATI,P.ERNST,Y.SHEN,E.SUMRALL, JRNL AUTH 2 L.HEEB,A.PLUCKTHUN,M.J.LOESSNER,S.KILCHER JRNL TITL REPROGRAMMING BACTERIOPHAGE HOST RANGE THROUGH JRNL TITL 2 STRUCTURE-GUIDED DESIGN OF CHIMERIC RECEPTOR BINDING JRNL TITL 3 PROTEINS. JRNL REF CELL REP V. 29 1336 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31665644 JRNL DOI 10.1016/J.CELREP.2019.09.062 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 177095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0200 - 5.2800 1.00 5609 302 0.2019 0.2242 REMARK 3 2 5.2800 - 4.1900 1.00 5593 293 0.1324 0.1513 REMARK 3 3 4.1900 - 3.6600 1.00 5630 300 0.1519 0.1743 REMARK 3 4 3.6600 - 3.3300 1.00 5621 297 0.1697 0.1641 REMARK 3 5 3.3300 - 3.0900 1.00 5634 299 0.1866 0.1903 REMARK 3 6 3.0900 - 2.9100 1.00 5594 294 0.1887 0.2099 REMARK 3 7 2.9100 - 2.7600 1.00 5589 295 0.1935 0.2244 REMARK 3 8 2.7600 - 2.6400 1.00 5592 293 0.1753 0.1881 REMARK 3 9 2.6400 - 2.5400 1.00 5584 297 0.1802 0.2032 REMARK 3 10 2.5400 - 2.4500 1.00 5621 299 0.1892 0.2192 REMARK 3 11 2.4500 - 2.3800 1.00 5630 297 0.1964 0.2401 REMARK 3 12 2.3800 - 2.3100 1.00 5624 295 0.1924 0.2290 REMARK 3 13 2.3100 - 2.2500 1.00 5627 295 0.1990 0.2052 REMARK 3 14 2.2500 - 2.1900 1.00 5574 291 0.1929 0.2447 REMARK 3 15 2.1900 - 2.1400 1.00 5570 293 0.2022 0.2253 REMARK 3 16 2.1400 - 2.1000 1.00 5655 296 0.2119 0.2424 REMARK 3 17 2.1000 - 2.0500 1.00 5611 298 0.2221 0.2589 REMARK 3 18 2.0500 - 2.0200 1.00 5649 295 0.2328 0.2521 REMARK 3 19 2.0200 - 1.9800 1.00 5539 288 0.2312 0.2693 REMARK 3 20 1.9800 - 1.9500 1.00 5651 296 0.2492 0.2798 REMARK 3 21 1.9500 - 1.9100 1.00 5660 296 0.2515 0.2559 REMARK 3 22 1.9100 - 1.8900 1.00 5517 297 0.2662 0.2974 REMARK 3 23 1.8900 - 1.8600 1.00 5677 288 0.2872 0.2989 REMARK 3 24 1.8600 - 1.8300 0.99 5588 298 0.3019 0.3318 REMARK 3 25 1.8300 - 1.8100 1.00 5594 296 0.3236 0.3329 REMARK 3 26 1.8100 - 1.7800 1.00 5629 297 0.3393 0.3444 REMARK 3 27 1.7800 - 1.7600 1.00 5588 297 0.3413 0.3436 REMARK 3 28 1.7600 - 1.7400 1.00 5629 288 0.3282 0.3498 REMARK 3 29 1.7400 - 1.7200 1.00 5552 296 0.3403 0.3488 REMARK 3 30 1.7200 - 1.7000 1.00 5602 296 0.3471 0.3801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3880 REMARK 3 ANGLE : 1.231 5278 REMARK 3 CHIRALITY : 0.078 635 REMARK 3 PLANARITY : 0.009 677 REMARK 3 DIHEDRAL : 12.761 2304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 203 THROUGH 228 OR REMARK 3 RESID 230 THROUGH 256 OR RESID 258 OR REMARK 3 RESID 260 THROUGH 324 OR RESID 326 REMARK 3 THROUGH 370)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 203 THROUGH 228 OR REMARK 3 RESID 230 THROUGH 256 OR RESID 258 OR REMARK 3 RESID 260 THROUGH 324 OR RESID 326 REMARK 3 THROUGH 370)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 203 THROUGH 228 OR REMARK 3 RESID 230 THROUGH 256 OR RESID 258 OR REMARK 3 RESID 260 THROUGH 324 OR RESID 326 REMARK 3 THROUGH 370)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 203 THROUGH 228 OR REMARK 3 RESID 230 THROUGH 256 OR RESID 258 OR REMARK 3 RESID 260 THROUGH 324 OR RESID 326 REMARK 3 THROUGH 370)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07093 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE, PH 4.6, 30% (V/V) REMARK 280 PEG 400, AND 0.1 M CADMIUM CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.45333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.90667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.90667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.45333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 614 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 201 REMARK 465 PRO A 202 REMARK 465 ASN B 201 REMARK 465 PRO B 202 REMARK 465 VAL B 371 REMARK 465 THR B 372 REMARK 465 THR B 373 REMARK 465 ASN C 201 REMARK 465 PRO C 202 REMARK 465 THR C 372 REMARK 465 THR C 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 652 O HOH C 625 1.78 REMARK 500 O HOH A 627 O HOH B 615 1.85 REMARK 500 O HOH B 503 O HOH B 631 1.86 REMARK 500 O HOH A 508 O HOH A 621 2.03 REMARK 500 O HOH C 638 O HOH C 642 2.12 REMARK 500 OG1 THR B 228 O HOH B 501 2.12 REMARK 500 O HOH B 519 O HOH B 642 2.13 REMARK 500 O HOH B 595 O HOH B 636 2.16 REMARK 500 OD1 ASN B 216 O HOH B 502 2.16 REMARK 500 O HOH B 604 O HOH B 660 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 605 4465 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 370 CG GLU A 370 CD -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 HIS A 221 NE2 89.4 REMARK 620 3 HIS B 214 NE2 88.7 86.5 REMARK 620 4 HIS B 221 NE2 175.4 93.8 94.8 REMARK 620 5 HIS C 214 NE2 99.2 171.3 94.7 77.6 REMARK 620 6 HIS C 221 NE2 85.7 92.9 174.4 90.9 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 405 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 226 OD1 REMARK 620 2 ASP A 226 OD2 52.6 REMARK 620 3 HOH A 643 O 97.2 125.5 REMARK 620 4 HOH C 613 O 146.4 95.4 94.6 REMARK 620 5 HOH C 617 O 92.2 109.9 116.1 110.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 317 OD1 REMARK 620 2 ASP A 317 OD2 53.0 REMARK 620 3 HOH A 629 O 91.4 84.9 REMARK 620 4 HOH A 632 O 150.0 97.5 90.5 REMARK 620 5 HOH A 641 O 99.0 151.8 94.0 110.7 REMARK 620 6 HOH C 608 O 88.6 88.1 171.2 85.1 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 336 OE1 REMARK 620 2 HOH A 561 O 85.7 REMARK 620 3 GLN B 336 OE1 83.7 110.1 REMARK 620 4 HOH B 571 O 164.1 83.5 89.2 REMARK 620 5 GLN C 336 OE1 86.0 163.7 82.8 107.2 REMARK 620 6 HOH C 507 O 107.0 85.9 161.7 83.7 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 406 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 370 OE1 REMARK 620 2 GLU A 370 OE2 52.6 REMARK 620 3 HOH B 505 O 96.3 108.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 523 O REMARK 620 2 HOH A 636 O 70.1 REMARK 620 3 GLU C 255 OE2 115.7 112.4 REMARK 620 4 HOH C 566 O 103.1 135.1 110.3 REMARK 620 5 HOH C 583 O 169.5 99.4 67.7 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 219 OD2 REMARK 620 2 ASP B 317 OD2 89.2 REMARK 620 3 HOH B 507 O 91.7 2.7 REMARK 620 4 HOH B 544 O 90.6 2.9 1.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 565 O REMARK 620 2 HOH B 609 O 108.5 REMARK 620 3 ASP C 226 OD1 121.0 79.1 REMARK 620 4 HOH C 527 O 116.2 132.2 64.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 629 O REMARK 620 2 ASP C 317 OD1 88.7 REMARK 620 3 ASP C 317 OD2 87.1 52.2 REMARK 620 4 HOH C 612 O 173.6 92.6 88.8 REMARK 620 5 HOH C 621 O 83.4 148.2 96.5 92.2 REMARK 620 6 HOH C 626 O 91.5 98.2 150.4 94.5 112.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 404 DBREF 6R5W A 201 373 UNP Q8W5Z4 Q8W5Z4_9CAUD 201 373 DBREF 6R5W B 201 373 UNP Q8W5Z4 Q8W5Z4_9CAUD 201 373 DBREF 6R5W C 201 373 UNP Q8W5Z4 Q8W5Z4_9CAUD 201 373 SEQRES 1 A 173 ASN PRO ALA GLN PHE ALA GLN LYS THR VAL LEU ASP GLU SEQRES 2 A 173 HIS VAL ASN ASP ALA ASP ILE HIS VAL THR ALA THR ASP SEQRES 3 A 173 LYS THR ASN TRP ASN ALA LYS GLU THR VAL GLU GLY ALA SEQRES 4 A 173 GLN ALA LYS ALA ASP LYS ALA LEU ALA ASP ALA LYS ALA SEQRES 5 A 173 PHE PHE GLU LEU SER SER SER VAL GLN SER VAL THR LEU SEQRES 6 A 173 THR PRO LYS ASN GLY PHE VAL ALA SER GLN PRO LEU ILE SEQRES 7 A 173 ALA ARG TYR ILE LYS PHE GLY ASN ARG PHE LEU VAL ILE SEQRES 8 A 173 VAL SER GLY ILE VAL GLY LYS GLY THR GLY SER GLY THR SEQRES 9 A 173 GLY ILE CYS ALA THR LEU PRO THR PHE LEU ALA PRO ASP SEQRES 10 A 173 ALA SER TRP ASN LYS LEU TYR SER ALA ALA GLN GLN SER SEQRES 11 A 173 THR ALA ALA SER ASN GLN ALA ASN ILE TYR LEU SER VAL SEQRES 12 A 173 SER ALA ASP ILE ASN ILE VAL GLY VAL GLY SER VAL ASP SEQRES 13 A 173 VAL ASN THR GLY LEU ASP GLY ILE ILE TYR LEU THR LYS SEQRES 14 A 173 GLU VAL THR THR SEQRES 1 B 173 ASN PRO ALA GLN PHE ALA GLN LYS THR VAL LEU ASP GLU SEQRES 2 B 173 HIS VAL ASN ASP ALA ASP ILE HIS VAL THR ALA THR ASP SEQRES 3 B 173 LYS THR ASN TRP ASN ALA LYS GLU THR VAL GLU GLY ALA SEQRES 4 B 173 GLN ALA LYS ALA ASP LYS ALA LEU ALA ASP ALA LYS ALA SEQRES 5 B 173 PHE PHE GLU LEU SER SER SER VAL GLN SER VAL THR LEU SEQRES 6 B 173 THR PRO LYS ASN GLY PHE VAL ALA SER GLN PRO LEU ILE SEQRES 7 B 173 ALA ARG TYR ILE LYS PHE GLY ASN ARG PHE LEU VAL ILE SEQRES 8 B 173 VAL SER GLY ILE VAL GLY LYS GLY THR GLY SER GLY THR SEQRES 9 B 173 GLY ILE CYS ALA THR LEU PRO THR PHE LEU ALA PRO ASP SEQRES 10 B 173 ALA SER TRP ASN LYS LEU TYR SER ALA ALA GLN GLN SER SEQRES 11 B 173 THR ALA ALA SER ASN GLN ALA ASN ILE TYR LEU SER VAL SEQRES 12 B 173 SER ALA ASP ILE ASN ILE VAL GLY VAL GLY SER VAL ASP SEQRES 13 B 173 VAL ASN THR GLY LEU ASP GLY ILE ILE TYR LEU THR LYS SEQRES 14 B 173 GLU VAL THR THR SEQRES 1 C 173 ASN PRO ALA GLN PHE ALA GLN LYS THR VAL LEU ASP GLU SEQRES 2 C 173 HIS VAL ASN ASP ALA ASP ILE HIS VAL THR ALA THR ASP SEQRES 3 C 173 LYS THR ASN TRP ASN ALA LYS GLU THR VAL GLU GLY ALA SEQRES 4 C 173 GLN ALA LYS ALA ASP LYS ALA LEU ALA ASP ALA LYS ALA SEQRES 5 C 173 PHE PHE GLU LEU SER SER SER VAL GLN SER VAL THR LEU SEQRES 6 C 173 THR PRO LYS ASN GLY PHE VAL ALA SER GLN PRO LEU ILE SEQRES 7 C 173 ALA ARG TYR ILE LYS PHE GLY ASN ARG PHE LEU VAL ILE SEQRES 8 C 173 VAL SER GLY ILE VAL GLY LYS GLY THR GLY SER GLY THR SEQRES 9 C 173 GLY ILE CYS ALA THR LEU PRO THR PHE LEU ALA PRO ASP SEQRES 10 C 173 ALA SER TRP ASN LYS LEU TYR SER ALA ALA GLN GLN SER SEQRES 11 C 173 THR ALA ALA SER ASN GLN ALA ASN ILE TYR LEU SER VAL SEQRES 12 C 173 SER ALA ASP ILE ASN ILE VAL GLY VAL GLY SER VAL ASP SEQRES 13 C 173 VAL ASN THR GLY LEU ASP GLY ILE ILE TYR LEU THR LYS SEQRES 14 C 173 GLU VAL THR THR HET 1PE A 401 38 HET CD A 402 1 HET CD A 403 1 HET CD A 404 1 HET CD A 405 1 HET CD A 406 1 HET ACT B 401 7 HET 1PE B 402 38 HET CD B 403 1 HET ACT C 401 7 HET CD C 402 1 HET CD C 403 1 HET CD C 404 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CD CADMIUM ION HETNAM ACT ACETATE ION HETSYN 1PE PEG400 FORMUL 4 1PE 2(C10 H22 O6) FORMUL 5 CD 9(CD 2+) FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 17 HOH *493(H2 O) HELIX 1 AA1 GLN A 207 ASN A 216 1 10 HELIX 2 AA2 ASP A 217 HIS A 221 5 5 HELIX 3 AA3 THR A 223 ALA A 232 1 10 HELIX 4 AA4 THR A 235 SER A 258 1 24 HELIX 5 AA5 PRO A 311 ALA A 315 5 5 HELIX 6 AA6 GLN B 207 ASN B 216 1 10 HELIX 7 AA7 ASP B 217 HIS B 221 5 5 HELIX 8 AA8 THR B 223 ALA B 232 1 10 HELIX 9 AA9 THR B 235 SER B 258 1 24 HELIX 10 AB1 PRO B 311 ALA B 315 5 5 HELIX 11 AB2 GLN C 207 ASN C 216 1 10 HELIX 12 AB3 ASP C 217 HIS C 221 5 5 HELIX 13 AB4 THR C 223 ALA C 232 1 10 HELIX 14 AB5 THR C 235 SER C 258 1 24 HELIX 15 AB6 PRO C 311 ALA C 315 5 5 SHEET 1 AA1 4 GLN A 261 LEU A 265 0 SHEET 2 AA1 4 VAL A 272 PHE A 284 -1 O LEU A 277 N LEU A 265 SHEET 3 AA1 4 ARG A 287 GLY A 297 -1 O ILE A 291 N ARG A 280 SHEET 4 AA1 4 THR A 359 GLY A 360 -1 O THR A 359 N VAL A 296 SHEET 1 AA2 4 GLN A 261 LEU A 265 0 SHEET 2 AA2 4 VAL A 272 PHE A 284 -1 O LEU A 277 N LEU A 265 SHEET 3 AA2 4 ARG A 287 GLY A 297 -1 O ILE A 291 N ARG A 280 SHEET 4 AA2 4 ILE A 365 LEU A 367 -1 O TYR A 366 N VAL A 290 SHEET 1 AA3 4 GLY A 305 THR A 309 0 SHEET 2 AA3 4 ASP A 346 VAL A 352 -1 O ILE A 349 N GLY A 305 SHEET 3 AA3 4 GLN A 336 LEU A 341 -1 N TYR A 340 O ASN A 348 SHEET 4 AA3 4 LYS A 322 ALA A 327 -1 N TYR A 324 O ILE A 339 SHEET 1 AA4 4 GLN B 261 THR B 264 0 SHEET 2 AA4 4 VAL B 272 PHE B 284 -1 O TYR B 281 N GLN B 261 SHEET 3 AA4 4 ARG B 287 GLY B 297 -1 O ARG B 287 N PHE B 284 SHEET 4 AA4 4 THR B 359 GLY B 360 -1 O THR B 359 N VAL B 296 SHEET 1 AA5 4 GLN B 261 THR B 264 0 SHEET 2 AA5 4 VAL B 272 PHE B 284 -1 O TYR B 281 N GLN B 261 SHEET 3 AA5 4 ARG B 287 GLY B 297 -1 O ARG B 287 N PHE B 284 SHEET 4 AA5 4 ILE B 365 LEU B 367 -1 O TYR B 366 N VAL B 290 SHEET 1 AA6 4 GLY B 305 ILE B 306 0 SHEET 2 AA6 4 ILE B 347 VAL B 352 -1 O ILE B 349 N GLY B 305 SHEET 3 AA6 4 GLN B 336 LEU B 341 -1 N TYR B 340 O ASN B 348 SHEET 4 AA6 4 LYS B 322 ALA B 327 -1 N ALA B 326 O ALA B 337 SHEET 1 AA7 4 GLN C 261 THR C 264 0 SHEET 2 AA7 4 VAL C 272 PHE C 284 -1 O ALA C 279 N VAL C 263 SHEET 3 AA7 4 ARG C 287 GLY C 297 -1 O ILE C 291 N ARG C 280 SHEET 4 AA7 4 THR C 359 GLY C 360 -1 O THR C 359 N VAL C 296 SHEET 1 AA8 4 GLN C 261 THR C 264 0 SHEET 2 AA8 4 VAL C 272 PHE C 284 -1 O ALA C 279 N VAL C 263 SHEET 3 AA8 4 ARG C 287 GLY C 297 -1 O ILE C 291 N ARG C 280 SHEET 4 AA8 4 ILE C 365 LEU C 367 -1 O TYR C 366 N VAL C 290 SHEET 1 AA9 4 GLY C 305 THR C 309 0 SHEET 2 AA9 4 ASP C 346 VAL C 352 -1 O ILE C 347 N ALA C 308 SHEET 3 AA9 4 GLN C 336 LEU C 341 -1 N TYR C 340 O ASN C 348 SHEET 4 AA9 4 LYS C 322 ALA C 327 -1 N LYS C 322 O LEU C 341 LINK NE2 HIS A 214 CD CD A 403 1555 1555 2.50 LINK NE2 HIS A 221 CD CD A 403 1555 1555 2.41 LINK OD1 ASP A 226 CD CD A 405 1555 1555 2.58 LINK OD2 ASP A 226 CD CD A 405 1555 1555 2.26 LINK OD1 ASP A 317 CD CD A 404 1555 1555 2.49 LINK OD2 ASP A 317 CD CD A 404 1555 1555 2.36 LINK OE1 GLN A 336 CD CD A 402 1555 1555 2.31 LINK OE1 GLU A 370 CD CD A 406 1555 1555 2.63 LINK OE2 GLU A 370 CD CD A 406 1555 1555 2.47 LINK CD CD A 402 O HOH A 561 1555 1555 2.34 LINK CD CD A 402 OE1 GLN B 336 1555 1555 2.36 LINK CD CD A 402 O HOH B 571 1555 1555 2.42 LINK CD CD A 402 OE1 GLN C 336 1555 1555 2.32 LINK CD CD A 402 O HOH C 507 1555 1555 2.55 LINK CD CD A 403 NE2 HIS B 214 1555 1555 2.48 LINK CD CD A 403 NE2 HIS B 221 1555 1555 2.39 LINK CD CD A 403 NE2 HIS C 214 1555 1555 2.45 LINK CD CD A 403 NE2 HIS C 221 1555 1555 2.51 LINK CD CD A 404 O HOH A 629 1555 1555 2.67 LINK CD CD A 404 O HOH A 632 1555 1555 2.54 LINK CD CD A 404 O HOH A 641 1555 1555 2.43 LINK CD CD A 404 O HOH C 608 1555 1555 2.56 LINK CD CD A 405 O HOH A 643 1555 1555 2.42 LINK CD CD A 405 O HOH C 613 1555 1555 2.53 LINK CD CD A 405 O HOH C 617 1555 1555 2.44 LINK CD CD A 406 O HOH B 505 1555 3454 2.59 LINK O HOH A 523 CD CD C 404 1555 1555 2.44 LINK O HOH A 636 CD CD C 404 1555 1555 2.59 LINK OD2 ASP B 219 CD CD B 403 1555 6455 2.69 LINK OD2 ASP B 317 CD CD B 403 1555 1555 2.47 LINK CD CD B 403 O HOH B 507 1555 1555 2.54 LINK CD CD B 403 O HOH B 544 1555 6445 2.43 LINK O HOH B 565 CD CD C 403 1555 1555 2.45 LINK O HOH B 609 CD CD C 403 1555 1555 2.54 LINK O HOH B 629 CD CD C 402 1555 1555 2.49 LINK OD1 ASP C 226 CD CD C 403 1555 1555 2.45 LINK OE2 GLU C 255 CD CD C 404 1555 1555 2.70 LINK OD1 ASP C 317 CD CD C 402 1555 1555 2.46 LINK OD2 ASP C 317 CD CD C 402 1555 1555 2.53 LINK CD CD C 402 O HOH C 612 1555 1555 2.57 LINK CD CD C 402 O HOH C 621 1555 1555 2.35 LINK CD CD C 402 O HOH C 626 1555 1555 2.52 LINK CD CD C 403 O HOH C 527 1555 1555 2.58 LINK CD CD C 404 O HOH C 566 1555 1555 2.61 LINK CD CD C 404 O HOH C 583 1555 1555 2.58 SITE 1 AC1 9 LYS A 298 TRP A 320 ASP A 356 HOH A 575 SITE 2 AC1 9 HOH A 604 SER C 274 GLN C 275 GLN C 329 SITE 3 AC1 9 ASN C 358 SITE 1 AC2 6 GLN A 336 HOH A 561 GLN B 336 HOH B 571 SITE 2 AC2 6 GLN C 336 HOH C 507 SITE 1 AC3 6 HIS A 214 HIS A 221 HIS B 214 HIS B 221 SITE 2 AC3 6 HIS C 214 HIS C 221 SITE 1 AC4 5 ASP A 317 HOH A 629 HOH A 632 HOH A 641 SITE 2 AC4 5 HOH C 608 SITE 1 AC5 4 ASP A 226 HOH A 643 HOH C 613 HOH C 617 SITE 1 AC6 3 GLU A 370 HOH B 505 HOH C 602 SITE 1 AC7 2 THR B 300 HOH B 533 SITE 1 AC8 5 GLU A 255 THR B 209 GLU B 213 HOH B 503 SITE 2 AC8 5 HOH B 631 SITE 1 AC9 6 ASP B 219 ASP B 317 HOH B 507 HOH B 544 SITE 2 AC9 6 HOH B 624 HOH B 625 SITE 1 AD1 1 PHE C 313 SITE 1 AD2 5 HOH B 629 ASP C 317 HOH C 612 HOH C 621 SITE 2 AD2 5 HOH C 626 SITE 1 AD3 4 HOH B 565 HOH B 609 ASP C 226 HOH C 527 SITE 1 AD4 6 HOH A 523 HOH A 636 GLU C 255 HOH C 531 SITE 2 AD4 6 HOH C 566 HOH C 583 CRYST1 134.700 134.700 79.360 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007424 0.004286 0.000000 0.00000 SCALE2 0.000000 0.008572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012601 0.00000