HEADER HYDROLASE 28-MAR-19 6R78 TITLE STRUCTURE OF IMP-13 METALLO-BETA-LACTAMASE IN APO FORM (LOOP CLOSED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: IMP-13; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.ZAK,C.SOFTLEY,M.KOLONKO,M.SATTLER,G.M.POPOWICZ REVDAT 4 15-MAY-24 6R78 1 LINK REVDAT 3 03-JUN-20 6R78 1 JRNL REVDAT 2 29-APR-20 6R78 1 JRNL REVDAT 1 01-APR-20 6R78 0 JRNL AUTH C.A.SOFTLEY,K.M.ZAK,M.J.BOSTOCK,R.FINO,R.X.ZHOU,M.KOLONKO, JRNL AUTH 2 R.MEJDI-NITIU,H.MEYER,M.SATTLER,G.M.POPOWICZ JRNL TITL STRUCTURE AND MOLECULAR RECOGNITION MECHANISM OF IMP-13 JRNL TITL 2 METALLO-BETA-LACTAMASE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 64 2020 JRNL REFN ESSN 1098-6596 JRNL PMID 32205343 JRNL DOI 10.1128/AAC.00123-20 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3501 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3194 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4741 ; 1.409 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7406 ; 1.251 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 7.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;33.299 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;14.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;12.837 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3812 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 221 B 4 221 6797 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6R78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 59.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG BUFFER PH 8.0, 25% PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 LYS B 58 CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 GLU B 174 CD OE1 OE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 GLU B 199 CG CD OE1 OE2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 409 O HOH B 452 1.78 REMARK 500 O HOH B 419 O HOH B 446 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 -170.87 -179.20 REMARK 500 ASN A 41 -119.60 61.11 REMARK 500 ASP A 48 143.75 73.46 REMARK 500 PRO A 50 172.99 -51.40 REMARK 500 ASN B 41 -119.70 57.21 REMARK 500 ASP B 48 144.08 71.50 REMARK 500 PRO B 50 175.10 -52.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 42 O REMARK 620 2 THR A 42 OG1 70.1 REMARK 620 3 ASP A 43 OD1 87.5 114.8 REMARK 620 4 GLU A 69 OE2 118.6 129.8 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HIS A 79 ND1 90.9 REMARK 620 3 HIS A 139 NE2 104.8 103.9 REMARK 620 4 HOH A 562 O 129.0 119.8 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 CYS A 158 SG 106.6 REMARK 620 3 HIS A 197 NE2 85.4 107.1 REMARK 620 4 HOH A 562 O 111.3 110.7 131.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 NE2 REMARK 620 2 HIS B 79 ND1 89.2 REMARK 620 3 HIS B 139 NE2 105.1 105.1 REMARK 620 4 HOH B 409 O 134.4 82.6 120.4 REMARK 620 5 HOH B 452 O 127.2 125.2 102.4 42.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 OD2 REMARK 620 2 CYS B 158 SG 105.7 REMARK 620 3 HIS B 197 NE2 91.4 105.3 REMARK 620 4 HOH B 452 O 109.1 116.3 125.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R73 RELATED DB: PDB DBREF 6R78 A 4 221 UNP G8B4G1 G8B4G1_KLEPN 22 239 DBREF 6R78 B 4 221 UNP G8B4G1 G8B4G1_KLEPN 22 239 SEQADV 6R78 PHE A 22 UNP G8B4G1 LEU 40 CONFLICT SEQADV 6R78 PHE B 22 UNP G8B4G1 LEU 40 CONFLICT SEQRES 1 A 218 LEU PRO ASP LEU LYS ILE GLU LYS LEU GLU GLU GLY VAL SEQRES 2 A 218 PHE VAL HIS THR SER PHE GLU GLU VAL ASN GLY TRP GLY SEQRES 3 A 218 VAL VAL THR LYS HIS GLY LEU VAL VAL LEU VAL ASN THR SEQRES 4 A 218 ASP ALA TYR LEU ILE ASP THR PRO PHE THR ALA THR ASP SEQRES 5 A 218 THR GLU LYS LEU VAL ASN TRP PHE VAL GLU ARG GLY TYR SEQRES 6 A 218 GLU ILE LYS GLY THR ILE SER SER HIS PHE HIS SER ASP SEQRES 7 A 218 SER THR GLY GLY ILE GLU TRP LEU ASN SER GLN SER ILE SEQRES 8 A 218 PRO THR TYR ALA SER GLU LEU THR ASN GLU LEU LEU LYS SEQRES 9 A 218 LYS SER GLY LYS VAL GLN ALA LYS TYR SER PHE SER GLU SEQRES 10 A 218 VAL SER TYR TRP LEU VAL LYS ASN LYS ILE GLU VAL PHE SEQRES 11 A 218 TYR PRO GLY PRO GLY HIS THR GLN ASP ASN LEU VAL VAL SEQRES 12 A 218 TRP LEU PRO GLU SER LYS ILE LEU PHE GLY GLY CYS PHE SEQRES 13 A 218 ILE LYS PRO HIS GLY LEU GLY ASN LEU GLY ASP ALA ASN SEQRES 14 A 218 LEU GLU ALA TRP PRO LYS SER ALA LYS ILE LEU MET SER SEQRES 15 A 218 LYS TYR GLY LYS ALA LYS LEU VAL VAL SER SER HIS SER SEQRES 16 A 218 GLU LYS GLY ASP ALA SER LEU MET LYS ARG THR TRP GLU SEQRES 17 A 218 GLN ALA LEU LYS GLY LEU LYS GLU SER LYS SEQRES 1 B 218 LEU PRO ASP LEU LYS ILE GLU LYS LEU GLU GLU GLY VAL SEQRES 2 B 218 PHE VAL HIS THR SER PHE GLU GLU VAL ASN GLY TRP GLY SEQRES 3 B 218 VAL VAL THR LYS HIS GLY LEU VAL VAL LEU VAL ASN THR SEQRES 4 B 218 ASP ALA TYR LEU ILE ASP THR PRO PHE THR ALA THR ASP SEQRES 5 B 218 THR GLU LYS LEU VAL ASN TRP PHE VAL GLU ARG GLY TYR SEQRES 6 B 218 GLU ILE LYS GLY THR ILE SER SER HIS PHE HIS SER ASP SEQRES 7 B 218 SER THR GLY GLY ILE GLU TRP LEU ASN SER GLN SER ILE SEQRES 8 B 218 PRO THR TYR ALA SER GLU LEU THR ASN GLU LEU LEU LYS SEQRES 9 B 218 LYS SER GLY LYS VAL GLN ALA LYS TYR SER PHE SER GLU SEQRES 10 B 218 VAL SER TYR TRP LEU VAL LYS ASN LYS ILE GLU VAL PHE SEQRES 11 B 218 TYR PRO GLY PRO GLY HIS THR GLN ASP ASN LEU VAL VAL SEQRES 12 B 218 TRP LEU PRO GLU SER LYS ILE LEU PHE GLY GLY CYS PHE SEQRES 13 B 218 ILE LYS PRO HIS GLY LEU GLY ASN LEU GLY ASP ALA ASN SEQRES 14 B 218 LEU GLU ALA TRP PRO LYS SER ALA LYS ILE LEU MET SER SEQRES 15 B 218 LYS TYR GLY LYS ALA LYS LEU VAL VAL SER SER HIS SER SEQRES 16 B 218 GLU LYS GLY ASP ALA SER LEU MET LYS ARG THR TRP GLU SEQRES 17 B 218 GLN ALA LEU LYS GLY LEU LYS GLU SER LYS HET GOL A 401 6 HET PEG A 402 7 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET BME A 406 4 HET ZN A 407 1 HET ZN A 408 1 HET NA A 409 1 HET EDO A 410 4 HET GOL A 411 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET BME B 305 4 HET ZN B 306 1 HET ZN B 307 1 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM BME BETA-MERCAPTOETHANOL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 4 PEG C4 H10 O3 FORMUL 8 BME 2(C2 H6 O S) FORMUL 9 ZN 4(ZN 2+) FORMUL 11 NA NA 1+ FORMUL 12 EDO C2 H6 O2 FORMUL 21 HOH *132(H2 O) HELIX 1 AA1 THR A 52 GLU A 65 1 14 HELIX 2 AA2 HIS A 79 GLY A 84 1 6 HELIX 3 AA3 GLY A 85 GLN A 92 1 8 HELIX 4 AA4 GLU A 100 SER A 109 1 10 HELIX 5 AA5 ALA A 175 GLY A 188 1 14 HELIX 6 AA6 ALA A 203 LYS A 221 1 19 HELIX 7 AA7 THR B 52 GLU B 65 1 14 HELIX 8 AA8 HIS B 79 GLY B 84 1 6 HELIX 9 AA9 GLY B 85 GLN B 92 1 8 HELIX 10 AB1 GLU B 100 SER B 109 1 10 HELIX 11 AB2 ALA B 175 TYR B 187 1 13 HELIX 12 AB3 ALA B 203 SER B 220 1 18 SHEET 1 AA1 7 LYS A 8 GLU A 13 0 SHEET 2 AA1 7 VAL A 16 VAL A 25 -1 O VAL A 18 N GLU A 10 SHEET 3 AA1 7 GLY A 29 VAL A 40 -1 O VAL A 31 N GLU A 23 SHEET 4 AA1 7 ASP A 43 ILE A 47 -1 O ILE A 47 N LEU A 36 SHEET 5 AA1 7 GLU A 69 ILE A 74 1 O ILE A 74 N LEU A 46 SHEET 6 AA1 7 THR A 96 SER A 99 1 O TYR A 97 N THR A 73 SHEET 7 AA1 7 TYR A 116 PHE A 118 1 O TYR A 116 N THR A 96 SHEET 1 AA2 5 SER A 122 VAL A 126 0 SHEET 2 AA2 5 ILE A 130 PHE A 133 -1 O ILE A 130 N VAL A 126 SHEET 3 AA2 5 VAL A 145 LEU A 148 -1 O VAL A 145 N PHE A 133 SHEET 4 AA2 5 ILE A 153 GLY A 157 -1 O PHE A 155 N VAL A 146 SHEET 5 AA2 5 LEU A 192 SER A 195 1 O LEU A 192 N LEU A 154 SHEET 1 AA3 7 LYS B 8 GLU B 13 0 SHEET 2 AA3 7 VAL B 16 VAL B 25 -1 O VAL B 18 N GLU B 10 SHEET 3 AA3 7 GLY B 29 VAL B 40 -1 O VAL B 31 N GLU B 23 SHEET 4 AA3 7 ASP B 43 ILE B 47 -1 O ILE B 47 N LEU B 36 SHEET 5 AA3 7 GLU B 69 ILE B 74 1 O ILE B 74 N LEU B 46 SHEET 6 AA3 7 THR B 96 SER B 99 1 O TYR B 97 N THR B 73 SHEET 7 AA3 7 TYR B 116 PHE B 118 1 O TYR B 116 N THR B 96 SHEET 1 AA4 5 SER B 122 VAL B 126 0 SHEET 2 AA4 5 ILE B 130 PHE B 133 -1 O ILE B 130 N VAL B 126 SHEET 3 AA4 5 VAL B 145 LEU B 148 -1 O VAL B 145 N PHE B 133 SHEET 4 AA4 5 ILE B 153 GLY B 157 -1 O PHE B 155 N VAL B 146 SHEET 5 AA4 5 LEU B 192 SER B 195 1 O LEU B 192 N LEU B 154 LINK O THR A 42 NA NA A 409 1555 1555 3.10 LINK OG1 THR A 42 NA NA A 409 1555 1555 2.49 LINK OD1 ASP A 43 NA NA A 409 1555 1555 2.55 LINK OE2 GLU A 69 NA NA A 409 1555 1555 2.86 LINK NE2 HIS A 77 ZN ZN A 407 1555 1555 2.14 LINK ND1 HIS A 79 ZN ZN A 407 1555 1555 2.01 LINK OD2 ASP A 81 ZN ZN A 408 1555 1555 2.07 LINK NE2 HIS A 139 ZN ZN A 407 1555 1555 1.99 LINK SG CYS A 158 ZN ZN A 408 1555 1555 2.30 LINK NE2 HIS A 197 ZN ZN A 408 1555 1555 2.14 LINK ZN ZN A 407 O HOH A 562 1555 1555 2.02 LINK ZN ZN A 408 O HOH A 562 1555 1555 2.05 LINK NE2 HIS B 77 ZN ZN B 307 1555 1555 2.15 LINK ND1 HIS B 79 ZN ZN B 307 1555 1555 2.00 LINK OD2 ASP B 81 ZN ZN B 306 1555 1555 2.07 LINK NE2 HIS B 139 ZN ZN B 307 1555 1555 1.98 LINK SG CYS B 158 ZN ZN B 306 1555 1555 2.36 LINK NE2 HIS B 197 ZN ZN B 306 1555 1555 2.04 LINK ZN ZN B 306 O HOH B 452 1555 1555 1.86 LINK ZN ZN B 307 O HOH B 409 1555 1555 2.56 LINK ZN ZN B 307 O HOH B 452 1555 1555 2.26 SITE 1 AC1 8 GLU A 14 GLY A 15 VAL A 16 LEU A 39 SITE 2 AC1 8 GLU A 150 SER A 151 HOH A 515 HOH A 516 SITE 1 AC2 2 TYR A 134 HOH A 527 SITE 1 AC3 2 ASP A 6 LEU A 7 SITE 1 AC4 8 SER A 99 GLU A 100 LEU A 101 SER A 119 SITE 2 AC4 8 GLU A 120 TYR A 134 HOH A 519 HOH A 523 SITE 1 AC5 2 HIS A 34 LYS A 200 SITE 1 AC6 5 HIS A 77 HIS A 79 HIS A 139 ZN A 408 SITE 2 AC6 5 HOH A 562 SITE 1 AC7 6 ASP A 81 CYS A 158 HIS A 197 ZN A 407 SITE 2 AC7 6 GOL A 411 HOH A 562 SITE 1 AC8 3 THR A 42 ASP A 43 GLU A 69 SITE 1 AC9 7 THR A 49 THR A 73 ILE A 74 SER A 75 SITE 2 AC9 7 ILE A 86 THR A 96 TYR A 97 SITE 1 AD1 5 HIS A 139 LYS A 161 ASN A 167 HIS A 197 SITE 2 AD1 5 ZN A 408 SITE 1 AD2 5 SER B 99 GLU B 100 LEU B 101 HOH B 411 SITE 2 AD2 5 HOH B 443 SITE 1 AD3 4 VAL B 25 ASN B 167 HOH B 409 HOH B 428 SITE 1 AD4 2 PHE B 17 TYR B 68 SITE 1 AD5 3 GLU B 199 LYS B 200 HOH B 406 SITE 1 AD6 4 LEU B 39 LEU B 148 SER B 151 HOH B 421 SITE 1 AD7 6 ASP B 81 CYS B 158 HIS B 197 ZN B 307 SITE 2 AD7 6 HOH B 444 HOH B 452 SITE 1 AD8 6 HIS B 77 HIS B 79 HIS B 139 ZN B 306 SITE 2 AD8 6 HOH B 409 HOH B 452 CRYST1 60.790 73.120 64.210 90.00 112.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016450 0.000000 0.006871 0.00000 SCALE2 0.000000 0.013676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016878 0.00000