HEADER MEMBRANE PROTEIN 29-MAR-19 6R7L TITLE RIBOSOME-BOUND SECYEG TRANSLOCON IN A NANODISC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECG; COMPND 3 CHAIN: G; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: SECE,PROTEIN TRANSLOCASE SUBUNIT SECE,PROTEIN TRANSLOCASE COMPND 6 SUBUNIT SECE,PROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 7 CHAIN: E; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 10 CHAIN: Y; COMPND 11 SYNONYM: SECY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562 KEYWDS MONOMERIC TRANSLOCON, NANODISC, INSERTION INTERMEDIATE, MEMBRANE KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.KATER,R.BECKMANN,A.KEDROV REVDAT 5 18-DEC-19 6R7L 1 SCALE REVDAT 4 16-OCT-19 6R7L 1 JRNL REVDAT 3 25-SEP-19 6R7L 1 COMPND REMARK DBREF LINK REVDAT 2 14-AUG-19 6R7L 1 JRNL REVDAT 1 07-AUG-19 6R7L 0 JRNL AUTH L.KATER,B.FRIEG,O.BERNINGHAUSEN,H.GOHLKE,R.BECKMANN,A.KEDROV JRNL TITL PARTIALLY INSERTED NASCENT CHAIN UNZIPS THE LATERAL GATE OF JRNL TITL 2 THE SEC TRANSLOCON. JRNL REF EMBO REP. V. 20 48191 2019 JRNL REFN ESSN 1469-3178 JRNL PMID 31379073 JRNL DOI 10.15252/EMBR.201948191 REMARK 2 REMARK 2 RESOLUTION. 6.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GAUTOMATCH, EM-TOOLS, GCTF, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.000 REMARK 3 NUMBER OF PARTICLES : 112366 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6R7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101423. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STALLED E. COLI RIBOSOME REMARK 245 NASCENT CHAIN COMPLEX (RNC) REMARK 245 BOUND TO THE TRANSLOCON SECYEG REMARK 245 IN A NANODISC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 13098 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2.50 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, E, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL E 119 REMARK 465 SER E 120 REMARK 465 PHE E 121 REMARK 465 ILE E 122 REMARK 465 THR E 123 REMARK 465 GLY E 124 REMARK 465 LEU E 125 REMARK 465 ARG E 126 REMARK 465 PHE E 127 REMARK 465 MET Y 1 REMARK 465 ALA Y 2 REMARK 465 LYS Y 3 REMARK 465 GLN Y 4 REMARK 465 PRO Y 5 REMARK 465 GLY Y 6 REMARK 465 LEU Y 7 REMARK 465 ASP Y 8 REMARK 465 PHE Y 9 REMARK 465 GLN Y 10 REMARK 465 SER Y 11 REMARK 465 ALA Y 12 REMARK 465 LYS Y 13 REMARK 465 GLY Y 14 REMARK 465 GLY Y 15 REMARK 465 LEU Y 16 REMARK 465 GLY Y 17 REMARK 465 PHE Y 38 REMARK 465 ILE Y 39 REMARK 465 PRO Y 40 REMARK 465 ILE Y 41 REMARK 465 PRO Y 42 REMARK 465 GLY Y 297 REMARK 465 THR Y 298 REMARK 465 GLY Y 299 REMARK 465 SER Y 427 REMARK 465 GLN Y 428 REMARK 465 TYR Y 429 REMARK 465 GLU Y 430 REMARK 465 SER Y 431 REMARK 465 ALA Y 432 REMARK 465 LEU Y 433 REMARK 465 LYS Y 434 REMARK 465 LYS Y 435 REMARK 465 ALA Y 436 REMARK 465 ASN Y 437 REMARK 465 LEU Y 438 REMARK 465 LYS Y 439 REMARK 465 GLY Y 440 REMARK 465 TYR Y 441 REMARK 465 GLY Y 442 REMARK 465 ARG Y 443 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU E 60 CG CD1 CD2 REMARK 470 LEU E 61 CG CD1 CD2 REMARK 470 THR E 62 OG1 CG2 REMARK 470 THR E 63 OG1 CG2 REMARK 470 LYS E 64 CG CD CE NZ REMARK 470 LYS E 66 CG CD CE NZ REMARK 470 THR E 68 OG1 CG2 REMARK 470 VAL E 69 CG1 CG2 REMARK 470 PHE E 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG E 73 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 74 CG CD OE1 OE2 REMARK 470 ARG E 76 CG CD NE CZ NH1 NH2 REMARK 470 THR E 77 OG1 CG2 REMARK 470 GLU E 78 CG CD OE1 OE2 REMARK 470 VAL E 79 CG1 CG2 REMARK 470 ARG E 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 81 CG CD CE NZ REMARK 470 VAL E 82 CG1 CG2 REMARK 470 ILE E 83 CG1 CG2 CD1 REMARK 470 TRP E 84 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 84 CZ3 CH2 REMARK 470 PRO E 85 CG CD REMARK 470 THR E 86 OG1 CG2 REMARK 470 ARG E 87 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 88 CG CD OE1 NE2 REMARK 470 GLU E 89 CG CD OE1 OE2 REMARK 470 THR E 90 OG1 CG2 REMARK 470 LEU E 91 CG CD1 CD2 REMARK 470 HIS E 92 CG ND1 CD2 CE1 NE2 REMARK 470 THR E 93 OG1 CG2 REMARK 470 THR E 94 OG1 CG2 REMARK 470 LEU E 95 CG CD1 CD2 REMARK 470 ILE E 96 CG1 CG2 CD1 REMARK 470 VAL E 97 CG1 CG2 REMARK 470 VAL E 100 CG1 CG2 REMARK 470 THR E 101 OG1 CG2 REMARK 470 VAL E 103 CG1 CG2 REMARK 470 MET E 104 CG SD CE REMARK 470 SER E 105 OG REMARK 470 LEU E 106 CG CD1 CD2 REMARK 470 ILE E 107 CG1 CG2 CD1 REMARK 470 LEU E 108 CG CD1 CD2 REMARK 470 TRP E 109 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP E 109 CZ3 CH2 REMARK 470 LEU E 111 CG CD1 CD2 REMARK 470 ASP E 112 CG OD1 OD2 REMARK 470 ILE E 114 CG1 CG2 CD1 REMARK 470 LEU E 115 CG CD1 CD2 REMARK 470 VAL E 116 CG1 CG2 REMARK 470 ARG E 117 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 118 CG CD1 CD2 REMARK 470 GLU Y 18 CG CD OE1 OE2 REMARK 470 LEU Y 19 CG CD1 CD2 REMARK 470 LYS Y 20 CG CD CE NZ REMARK 470 ARG Y 21 CG CD NE CZ NH1 NH2 REMARK 470 ARG Y 22 CG CD NE CZ NH1 NH2 REMARK 470 LEU Y 23 CG CD1 CD2 REMARK 470 LEU Y 24 CG CD1 CD2 REMARK 470 PHE Y 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL Y 26 CG1 CG2 REMARK 470 ILE Y 27 CG1 CG2 CD1 REMARK 470 LEU Y 30 CG CD1 CD2 REMARK 470 ILE Y 31 CG1 CG2 CD1 REMARK 470 VAL Y 32 CG1 CG2 REMARK 470 PHE Y 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG Y 34 CG CD NE CZ NH1 NH2 REMARK 470 ILE Y 35 CG1 CG2 CD1 REMARK 470 SER Y 37 OG REMARK 470 ILE Y 44 CG1 CG2 CD1 REMARK 470 ASP Y 45 CG OD1 OD2 REMARK 470 VAL Y 48 CG1 CG2 REMARK 470 LEU Y 49 CG CD1 CD2 REMARK 470 LYS Y 51 CG CD CE NZ REMARK 470 LEU Y 52 CG CD1 CD2 REMARK 470 LEU Y 53 CG CD1 CD2 REMARK 470 GLU Y 54 CG CD OE1 OE2 REMARK 470 GLN Y 55 CG CD OE1 NE2 REMARK 470 GLN Y 56 CG CD OE1 NE2 REMARK 470 ARG Y 57 CG CD NE CZ NH1 NH2 REMARK 470 THR Y 59 OG1 CG2 REMARK 470 ILE Y 60 CG1 CG2 CD1 REMARK 470 ILE Y 61 CG1 CG2 CD1 REMARK 470 GLU Y 62 CG CD OE1 OE2 REMARK 470 MET Y 63 CG SD CE REMARK 470 PHE Y 64 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN Y 65 CG OD1 ND2 REMARK 470 MET Y 66 CG SD CE REMARK 470 PHE Y 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER Y 68 OG REMARK 470 LEU Y 72 CG CD1 CD2 REMARK 470 SER Y 73 OG REMARK 470 ARG Y 74 CG CD NE CZ NH1 NH2 REMARK 470 SER Y 76 OG REMARK 470 ILE Y 77 CG1 CG2 CD1 REMARK 470 PHE Y 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU Y 80 CG CD1 CD2 REMARK 470 ILE Y 82 CG1 CG2 CD1 REMARK 470 MET Y 83 CG SD CE REMARK 470 PRO Y 84 CG CD REMARK 470 TYR Y 85 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE Y 86 CG1 CG2 CD1 REMARK 470 SER Y 87 OG REMARK 470 SER Y 89 OG REMARK 470 ILE Y 90 CG1 CG2 CD1 REMARK 470 ILE Y 91 CG1 CG2 CD1 REMARK 470 ILE Y 92 CG1 CG2 CD1 REMARK 470 GLN Y 93 CG CD OE1 NE2 REMARK 470 LEU Y 94 CG CD1 CD2 REMARK 470 LEU Y 95 CG CD1 CD2 REMARK 470 THR Y 96 OG1 CG2 REMARK 470 VAL Y 97 CG1 CG2 REMARK 470 VAL Y 98 CG1 CG2 REMARK 470 HIS Y 99 CG ND1 CD2 CE1 NE2 REMARK 470 PRO Y 100 CG CD REMARK 470 THR Y 101 OG1 CG2 REMARK 470 LEU Y 102 CG CD1 CD2 REMARK 470 GLU Y 104 CG CD OE1 OE2 REMARK 470 ILE Y 105 CG1 CG2 CD1 REMARK 470 LYS Y 106 CG CD CE NZ REMARK 470 LYS Y 107 CG CD CE NZ REMARK 470 GLU Y 108 CG CD OE1 OE2 REMARK 470 GLU Y 110 CG CD OE1 OE2 REMARK 470 SER Y 111 OG REMARK 470 ARG Y 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG Y 114 CG CD NE CZ NH1 NH2 REMARK 470 LYS Y 115 CG CD CE NZ REMARK 470 ILE Y 116 CG1 CG2 CD1 REMARK 470 SER Y 117 OG REMARK 470 GLN Y 118 CG CD OE1 NE2 REMARK 470 TYR Y 119 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR Y 120 OG1 CG2 REMARK 470 ARG Y 121 CG CD NE CZ NH1 NH2 REMARK 470 TYR Y 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR Y 124 OG1 CG2 REMARK 470 LEU Y 125 CG CD1 CD2 REMARK 470 VAL Y 126 CG1 CG2 REMARK 470 LEU Y 127 CG CD1 CD2 REMARK 470 ILE Y 129 CG1 CG2 CD1 REMARK 470 PHE Y 130 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN Y 131 CG CD OE1 NE2 REMARK 470 SER Y 132 OG REMARK 470 ILE Y 133 CG1 CG2 CD1 REMARK 470 ILE Y 135 CG1 CG2 CD1 REMARK 470 THR Y 137 OG1 CG2 REMARK 470 LEU Y 139 CG CD1 CD2 REMARK 470 PRO Y 140 CG CD REMARK 470 ASN Y 141 CG OD1 ND2 REMARK 470 MET Y 142 CG SD CE REMARK 470 PRO Y 143 CG CD REMARK 470 MET Y 145 CG SD CE REMARK 470 GLN Y 146 CG CD OE1 NE2 REMARK 470 LEU Y 148 CG CD1 CD2 REMARK 470 VAL Y 149 CG1 CG2 REMARK 470 ILE Y 150 CG1 CG2 CD1 REMARK 470 ASN Y 151 CG OD1 ND2 REMARK 470 PRO Y 152 CG CD REMARK 470 PHE Y 154 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE Y 156 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR Y 157 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE Y 158 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR Y 159 OG1 CG2 REMARK 470 VAL Y 161 CG1 CG2 REMARK 470 VAL Y 162 CG1 CG2 REMARK 470 SER Y 163 OG REMARK 470 LEU Y 164 CG CD1 CD2 REMARK 470 VAL Y 165 CG1 CG2 REMARK 470 THR Y 166 OG1 CG2 REMARK 470 THR Y 168 OG1 CG2 REMARK 470 MET Y 169 CG SD CE REMARK 470 PHE Y 170 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU Y 171 CG CD1 CD2 REMARK 470 MET Y 172 CG SD CE REMARK 470 TRP Y 173 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP Y 173 CZ3 CH2 REMARK 470 LEU Y 174 CG CD1 CD2 REMARK 470 GLU Y 176 CG CD OE1 OE2 REMARK 470 GLN Y 177 CG CD OE1 NE2 REMARK 470 ILE Y 178 CG1 CG2 CD1 REMARK 470 THR Y 179 OG1 CG2 REMARK 470 GLU Y 180 CG CD OE1 OE2 REMARK 470 ARG Y 181 CG CD NE CZ NH1 NH2 REMARK 470 ILE Y 183 CG1 CG2 CD1 REMARK 470 ASN Y 185 CG OD1 ND2 REMARK 470 ILE Y 187 CG1 CG2 CD1 REMARK 470 SER Y 188 OG REMARK 470 ILE Y 189 CG1 CG2 CD1 REMARK 470 ILE Y 190 CG1 CG2 CD1 REMARK 470 ILE Y 191 CG1 CG2 CD1 REMARK 470 PHE Y 192 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE Y 195 CG1 CG2 CD1 REMARK 470 VAL Y 196 CG1 CG2 REMARK 470 LEU Y 199 CG CD1 CD2 REMARK 470 PRO Y 200 CG CD REMARK 470 PRO Y 201 CG CD REMARK 470 ILE Y 203 CG1 CG2 CD1 REMARK 470 HIS Y 205 CG ND1 CD2 CE1 NE2 REMARK 470 THR Y 206 OG1 CG2 REMARK 470 ILE Y 207 CG1 CG2 CD1 REMARK 470 GLU Y 208 CG CD OE1 OE2 REMARK 470 GLN Y 209 CG CD OE1 NE2 REMARK 470 ARG Y 211 CG CD NE CZ NH1 NH2 REMARK 470 GLN Y 212 CG CD OE1 NE2 REMARK 470 ASP Y 214 CG OD1 OD2 REMARK 470 LEU Y 215 CG CD1 CD2 REMARK 470 HIS Y 216 CG ND1 CD2 CE1 NE2 REMARK 470 PHE Y 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU Y 218 CG CD1 CD2 REMARK 470 VAL Y 219 CG1 CG2 REMARK 470 LEU Y 220 CG CD1 CD2 REMARK 470 LEU Y 221 CG CD1 CD2 REMARK 470 LEU Y 222 CG CD1 CD2 REMARK 470 VAL Y 223 CG1 CG2 REMARK 470 VAL Y 225 CG1 CG2 REMARK 470 LEU Y 226 CG CD1 CD2 REMARK 470 VAL Y 227 CG1 CG2 REMARK 470 PHE Y 228 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL Y 230 CG1 CG2 REMARK 470 THR Y 231 OG1 CG2 REMARK 470 PHE Y 232 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE Y 233 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL Y 234 CG1 CG2 REMARK 470 VAL Y 235 CG1 CG2 REMARK 470 PHE Y 236 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL Y 237 CG1 CG2 REMARK 470 GLU Y 238 CG CD OE1 OE2 REMARK 470 ARG Y 239 CG CD NE CZ NH1 NH2 REMARK 470 GLN Y 241 CG CD OE1 NE2 REMARK 470 ARG Y 242 CG CD NE CZ NH1 NH2 REMARK 470 ARG Y 243 CG CD NE CZ NH1 NH2 REMARK 470 ILE Y 244 CG1 CG2 CD1 REMARK 470 VAL Y 245 CG1 CG2 REMARK 470 VAL Y 246 CG1 CG2 REMARK 470 ASN Y 247 CG OD1 ND2 REMARK 470 TYR Y 248 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS Y 250 CG CD CE NZ REMARK 470 ARG Y 251 CG CD NE CZ NH1 NH2 REMARK 470 GLN Y 252 CG CD OE1 NE2 REMARK 470 GLN Y 253 CG CD OE1 NE2 REMARK 470 ARG Y 255 CG CD NE CZ NH1 NH2 REMARK 470 ARG Y 256 CG CD NE CZ NH1 NH2 REMARK 470 VAL Y 257 CG1 CG2 REMARK 470 TYR Y 258 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN Y 261 CG CD OE1 NE2 REMARK 470 SER Y 262 OG REMARK 470 THR Y 263 OG1 CG2 REMARK 470 HIS Y 264 CG ND1 CD2 CE1 NE2 REMARK 470 LEU Y 265 CG CD1 CD2 REMARK 470 PRO Y 266 CG CD REMARK 470 LEU Y 267 CG CD1 CD2 REMARK 470 LYS Y 268 CG CD CE NZ REMARK 470 VAL Y 269 CG1 CG2 REMARK 470 ASN Y 270 CG OD1 ND2 REMARK 470 MET Y 271 CG SD CE REMARK 470 VAL Y 274 CG1 CG2 REMARK 470 ILE Y 275 CG1 CG2 CD1 REMARK 470 PRO Y 276 CG CD REMARK 470 ILE Y 278 CG1 CG2 CD1 REMARK 470 PHE Y 279 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER Y 281 OG REMARK 470 SER Y 282 OG REMARK 470 ILE Y 283 CG1 CG2 CD1 REMARK 470 ILE Y 284 CG1 CG2 CD1 REMARK 470 LEU Y 285 CG CD1 CD2 REMARK 470 PHE Y 286 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO Y 287 CG CD REMARK 470 THR Y 289 OG1 CG2 REMARK 470 ILE Y 290 CG1 CG2 CD1 REMARK 470 SER Y 292 OG REMARK 470 TRP Y 293 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP Y 293 CZ3 CH2 REMARK 470 PHE Y 294 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP Y 300 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP Y 300 CZ3 CH2 REMARK 470 ASN Y 301 CG OD1 ND2 REMARK 470 TRP Y 302 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP Y 302 CZ3 CH2 REMARK 470 LEU Y 303 CG CD1 CD2 REMARK 470 THR Y 304 OG1 CG2 REMARK 470 THR Y 305 OG1 CG2 REMARK 470 ILE Y 306 CG1 CG2 CD1 REMARK 470 SER Y 307 OG REMARK 470 LEU Y 308 CG CD1 CD2 REMARK 470 TYR Y 309 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU Y 310 CG CD1 CD2 REMARK 470 GLN Y 311 CG CD OE1 NE2 REMARK 470 PRO Y 312 CG CD REMARK 470 GLN Y 314 CG CD OE1 NE2 REMARK 470 PRO Y 315 CG CD REMARK 470 LEU Y 316 CG CD1 CD2 REMARK 470 TYR Y 317 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL Y 318 CG1 CG2 REMARK 470 LEU Y 319 CG CD1 CD2 REMARK 470 LEU Y 320 CG CD1 CD2 REMARK 470 TYR Y 321 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER Y 323 OG REMARK 470 ILE Y 325 CG1 CG2 CD1 REMARK 470 ILE Y 326 CG1 CG2 CD1 REMARK 470 PHE Y 327 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE Y 328 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS Y 329 SG REMARK 470 PHE Y 330 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE Y 331 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR Y 332 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR Y 333 OG1 CG2 REMARK 470 LEU Y 335 CG CD1 CD2 REMARK 470 VAL Y 336 CG1 CG2 REMARK 470 PHE Y 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN Y 338 CG OD1 ND2 REMARK 470 PRO Y 339 CG CD REMARK 470 ARG Y 340 CG CD NE CZ NH1 NH2 REMARK 470 GLU Y 341 CG CD OE1 OE2 REMARK 470 THR Y 342 OG1 CG2 REMARK 470 ASP Y 344 CG OD1 OD2 REMARK 470 ASN Y 345 CG OD1 ND2 REMARK 470 LEU Y 346 CG CD1 CD2 REMARK 470 LYS Y 347 CG CD CE NZ REMARK 470 LYS Y 348 CG CD CE NZ REMARK 470 SER Y 349 OG REMARK 470 PHE Y 352 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL Y 353 CG1 CG2 REMARK 470 PRO Y 354 CG CD REMARK 470 ILE Y 356 CG1 CG2 CD1 REMARK 470 ARG Y 357 CG CD NE CZ NH1 NH2 REMARK 470 PRO Y 358 CG CD REMARK 470 GLU Y 360 CG CD OE1 OE2 REMARK 470 GLN Y 361 CG CD OE1 NE2 REMARK 470 THR Y 362 OG1 CG2 REMARK 470 LYS Y 364 CG CD CE NZ REMARK 470 TYR Y 365 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE Y 366 CG1 CG2 CD1 REMARK 470 ASP Y 367 CG OD1 OD2 REMARK 470 LYS Y 368 CG CD CE NZ REMARK 470 VAL Y 369 CG1 CG2 REMARK 470 MET Y 370 CG SD CE REMARK 470 THR Y 371 OG1 CG2 REMARK 470 ARG Y 372 CG CD NE CZ NH1 NH2 REMARK 470 LEU Y 373 CG CD1 CD2 REMARK 470 THR Y 374 OG1 CG2 REMARK 470 LEU Y 375 CG CD1 CD2 REMARK 470 VAL Y 376 CG1 CG2 REMARK 470 LEU Y 379 CG CD1 CD2 REMARK 470 TYR Y 380 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE Y 381 CG1 CG2 CD1 REMARK 470 THR Y 382 OG1 CG2 REMARK 470 PHE Y 383 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE Y 384 CG1 CG2 CD1 REMARK 470 CYS Y 385 SG REMARK 470 LEU Y 386 CG CD1 CD2 REMARK 470 ILE Y 387 CG1 CG2 CD1 REMARK 470 PRO Y 388 CG CD REMARK 470 GLU Y 389 CG CD OE1 OE2 REMARK 470 PHE Y 390 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET Y 391 CG SD CE REMARK 470 ARG Y 392 CG CD NE CZ NH1 NH2 REMARK 470 ASP Y 393 CG OD1 OD2 REMARK 470 MET Y 395 CG SD CE REMARK 470 LYS Y 396 CG CD CE NZ REMARK 470 VAL Y 397 CG1 CG2 REMARK 470 PRO Y 398 CG CD REMARK 470 PHE Y 399 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR Y 400 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE Y 401 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR Y 404 OG1 CG2 REMARK 470 SER Y 405 OG REMARK 470 LEU Y 406 CG CD1 CD2 REMARK 470 LEU Y 407 CG CD1 CD2 REMARK 470 ILE Y 408 CG1 CG2 CD1 REMARK 470 VAL Y 409 CG1 CG2 REMARK 470 VAL Y 410 CG1 CG2 REMARK 470 VAL Y 411 CG1 CG2 REMARK 470 VAL Y 412 CG1 CG2 REMARK 470 ILE Y 413 CG1 CG2 CD1 REMARK 470 MET Y 414 CG SD CE REMARK 470 ASP Y 415 CG OD1 OD2 REMARK 470 PHE Y 416 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET Y 417 CG SD CE REMARK 470 GLN Y 419 CG CD OE1 NE2 REMARK 470 VAL Y 420 CG1 CG2 REMARK 470 GLN Y 421 CG CD OE1 NE2 REMARK 470 THR Y 422 OG1 CG2 REMARK 470 LEU Y 423 CG CD1 CD2 REMARK 470 MET Y 424 CG SD CE REMARK 470 MET Y 425 CG SD CE REMARK 470 SER Y 426 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER Y 292 CB SER Y 307 1.49 REMARK 500 CA SER Y 292 CB SER Y 307 2.02 REMARK 500 C GLU Y 62 CB PHE Y 399 2.02 REMARK 500 N MET Y 63 CB PHE Y 399 2.11 REMARK 500 O HIS Y 99 N LEU Y 102 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Y 45 103.38 -50.99 REMARK 500 GLN Y 56 -175.64 -61.75 REMARK 500 ARG Y 57 -14.89 74.90 REMARK 500 ALA Y 75 70.99 38.89 REMARK 500 HIS Y 99 76.04 59.98 REMARK 500 ILE Y 135 -73.11 -54.69 REMARK 500 PRO Y 140 -129.67 -49.58 REMARK 500 PRO Y 143 10.33 -64.20 REMARK 500 GLU Y 180 -66.49 -95.71 REMARK 500 ARG Y 239 -72.59 -61.43 REMARK 500 GLN Y 241 -90.10 -98.05 REMARK 500 ARG Y 242 110.78 179.26 REMARK 500 ARG Y 256 44.53 -90.49 REMARK 500 VAL Y 269 -160.20 -57.76 REMARK 500 ASN Y 270 132.43 -22.52 REMARK 500 ALA Y 272 70.74 -52.69 REMARK 500 VAL Y 274 104.36 -59.62 REMARK 500 LEU Y 310 51.02 -56.42 REMARK 500 PRO Y 312 49.81 -80.89 REMARK 500 LYS Y 396 19.63 109.90 REMARK 500 PRO Y 398 -105.45 -131.39 REMARK 500 TYR Y 400 -112.64 -83.95 REMARK 500 PHE Y 401 97.59 -56.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-4743 RELATED DB: EMDB REMARK 900 RBIBOSOME-BOUND SECYEG TRANSLOCON IN A NANODISC DBREF 6R7L G 49 70 PDB 6R7L 6R7L 49 70 DBREF 6R7L E 1 41 PDB 6R7L 6R7L 1 41 DBREF1 6R7L E 60 127 UNP A0A377BMD6_ECOLX DBREF2 6R7L E A0A377BMD6 38 105 DBREF 6R7L Y 1 443 UNP P0AGA2 SECY_ECOLI 1 443 SEQRES 1 G 22 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 G 22 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 E 107 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 E 107 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 E 107 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 E 107 LEU LEU THR THR LYS GLY LYS ALA THR VAL ALA PHE ALA SEQRES 5 E 107 ARG GLU ALA ARG THR GLU VAL ARG LYS VAL ILE TRP PRO SEQRES 6 E 107 THR ARG GLN GLU THR LEU HIS THR THR LEU ILE VAL ALA SEQRES 7 E 107 ALA VAL THR ALA VAL MET SER LEU ILE LEU TRP GLY LEU SEQRES 8 E 107 ASP GLY ILE LEU VAL ARG LEU VAL SER PHE ILE THR GLY SEQRES 9 E 107 LEU ARG PHE SEQRES 1 Y 443 MET ALA LYS GLN PRO GLY LEU ASP PHE GLN SER ALA LYS SEQRES 2 Y 443 GLY GLY LEU GLY GLU LEU LYS ARG ARG LEU LEU PHE VAL SEQRES 3 Y 443 ILE GLY ALA LEU ILE VAL PHE ARG ILE GLY SER PHE ILE SEQRES 4 Y 443 PRO ILE PRO GLY ILE ASP ALA ALA VAL LEU ALA LYS LEU SEQRES 5 Y 443 LEU GLU GLN GLN ARG GLY THR ILE ILE GLU MET PHE ASN SEQRES 6 Y 443 MET PHE SER GLY GLY ALA LEU SER ARG ALA SER ILE PHE SEQRES 7 Y 443 ALA LEU GLY ILE MET PRO TYR ILE SER ALA SER ILE ILE SEQRES 8 Y 443 ILE GLN LEU LEU THR VAL VAL HIS PRO THR LEU ALA GLU SEQRES 9 Y 443 ILE LYS LYS GLU GLY GLU SER GLY ARG ARG LYS ILE SER SEQRES 10 Y 443 GLN TYR THR ARG TYR GLY THR LEU VAL LEU ALA ILE PHE SEQRES 11 Y 443 GLN SER ILE GLY ILE ALA THR GLY LEU PRO ASN MET PRO SEQRES 12 Y 443 GLY MET GLN GLY LEU VAL ILE ASN PRO GLY PHE ALA PHE SEQRES 13 Y 443 TYR PHE THR ALA VAL VAL SER LEU VAL THR GLY THR MET SEQRES 14 Y 443 PHE LEU MET TRP LEU GLY GLU GLN ILE THR GLU ARG GLY SEQRES 15 Y 443 ILE GLY ASN GLY ILE SER ILE ILE ILE PHE ALA GLY ILE SEQRES 16 Y 443 VAL ALA GLY LEU PRO PRO ALA ILE ALA HIS THR ILE GLU SEQRES 17 Y 443 GLN ALA ARG GLN GLY ASP LEU HIS PHE LEU VAL LEU LEU SEQRES 18 Y 443 LEU VAL ALA VAL LEU VAL PHE ALA VAL THR PHE PHE VAL SEQRES 19 Y 443 VAL PHE VAL GLU ARG GLY GLN ARG ARG ILE VAL VAL ASN SEQRES 20 Y 443 TYR ALA LYS ARG GLN GLN GLY ARG ARG VAL TYR ALA ALA SEQRES 21 Y 443 GLN SER THR HIS LEU PRO LEU LYS VAL ASN MET ALA GLY SEQRES 22 Y 443 VAL ILE PRO ALA ILE PHE ALA SER SER ILE ILE LEU PHE SEQRES 23 Y 443 PRO ALA THR ILE ALA SER TRP PHE GLY GLY GLY THR GLY SEQRES 24 Y 443 TRP ASN TRP LEU THR THR ILE SER LEU TYR LEU GLN PRO SEQRES 25 Y 443 GLY GLN PRO LEU TYR VAL LEU LEU TYR ALA SER ALA ILE SEQRES 26 Y 443 ILE PHE PHE CYS PHE PHE TYR THR ALA LEU VAL PHE ASN SEQRES 27 Y 443 PRO ARG GLU THR ALA ASP ASN LEU LYS LYS SER GLY ALA SEQRES 28 Y 443 PHE VAL PRO GLY ILE ARG PRO GLY GLU GLN THR ALA LYS SEQRES 29 Y 443 TYR ILE ASP LYS VAL MET THR ARG LEU THR LEU VAL GLY SEQRES 30 Y 443 ALA LEU TYR ILE THR PHE ILE CYS LEU ILE PRO GLU PHE SEQRES 31 Y 443 MET ARG ASP ALA MET LYS VAL PRO PHE TYR PHE GLY GLY SEQRES 32 Y 443 THR SER LEU LEU ILE VAL VAL VAL VAL ILE MET ASP PHE SEQRES 33 Y 443 MET ALA GLN VAL GLN THR LEU MET MET SER SER GLN TYR SEQRES 34 Y 443 GLU SER ALA LEU LYS LYS ALA ASN LEU LYS GLY TYR GLY SEQRES 35 Y 443 ARG HELIX 1 AA1 UNK G 49 UNK G 70 1 22 HELIX 2 AA2 UNK E 2 UNK E 18 1 17 HELIX 3 AA3 UNK E 22 UNK E 39 1 18 HELIX 4 AA4 LEU E 61 ARG E 80 1 20 HELIX 5 AA5 THR E 86 LEU E 118 1 33 HELIX 6 AA6 LEU Y 19 SER Y 37 1 19 HELIX 7 AA7 ASP Y 45 LEU Y 53 1 9 HELIX 8 AA8 GLY Y 58 SER Y 68 1 11 HELIX 9 AA9 ILE Y 82 VAL Y 98 1 17 HELIX 10 AB1 HIS Y 99 LYS Y 107 1 9 HELIX 11 AB2 GLY Y 112 LEU Y 139 1 28 HELIX 12 AB3 GLY Y 153 THR Y 179 1 27 HELIX 13 AB4 GLY Y 186 ALA Y 197 1 12 HELIX 14 AB5 GLY Y 198 GLN Y 209 1 12 HELIX 15 AB6 HIS Y 216 GLY Y 240 1 25 HELIX 16 AB7 VAL Y 274 ALA Y 291 1 18 HELIX 17 AB8 ASN Y 301 LEU Y 310 1 10 HELIX 18 AB9 GLN Y 314 PHE Y 337 1 24 HELIX 19 AC1 ASN Y 338 GLY Y 350 1 13 HELIX 20 AC2 GLY Y 359 LYS Y 396 1 38 HELIX 21 AC3 THR Y 404 SER Y 426 1 23 SHEET 1 AA1 2 ARG Y 243 ALA Y 249 0 SHEET 2 AA1 2 ALA Y 260 PRO Y 266 -1 O GLN Y 261 N TYR Y 248 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000