data_6R7M # _entry.id 6R7M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6R7M pdb_00006r7m 10.2210/pdb6r7m/pdb WWPDB D_1292101538 ? ? EMDB EMD-4628 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-03 2 'Structure model' 1 1 2019-07-17 3 'Structure model' 1 2 2019-07-24 4 'Structure model' 1 3 2019-07-31 5 'Structure model' 1 4 2019-11-27 6 'Structure model' 1 5 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' citation 4 4 'Structure model' citation_author 5 5 'Structure model' pdbx_helical_symmetry 6 5 'Structure model' pdbx_struct_assembly 7 5 'Structure model' pdbx_struct_assembly_gen 8 5 'Structure model' pdbx_struct_assembly_prop 9 5 'Structure model' pdbx_struct_oper_list 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond 12 6 'Structure model' database_2 13 6 'Structure model' em_3d_fitting_list 14 6 'Structure model' pdbx_initial_refinement_model 15 6 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.pdbx_database_id_PubMed' 9 3 'Structure model' '_citation.title' 10 4 'Structure model' '_citation.journal_volume' 11 4 'Structure model' '_citation.page_first' 12 4 'Structure model' '_citation.page_last' 13 4 'Structure model' '_citation_author.identifier_ORCID' 14 6 'Structure model' '_database_2.pdbx_DOI' 15 6 'Structure model' '_database_2.pdbx_database_accession' 16 6 'Structure model' '_em_3d_fitting_list.accession_code' 17 6 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 18 6 'Structure model' '_em_3d_fitting_list.source_name' 19 6 'Structure model' '_em_3d_fitting_list.type' 20 6 'Structure model' '_pdbx_struct_oper_list.name' 21 6 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 22 6 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6R7M _pdbx_database_status.recvd_initial_deposition_date 2019-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4628 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schmidli, C.' 1 0000-0001-6866-897X 'Albiez, S.' 2 0000-0002-0686-8981 'Rima, L.' 3 0000-0002-6349-5771 'Righetto, R.' 4 0000-0003-4247-4303 'Mohammed, I.' 5 0000-0001-8177-1349 'Oliva, P.' 6 0000-0002-0611-7635 'Kovacik, L.' 7 0000-0002-0644-3027 'Stahlberg, H.' 8 0000-0002-1185-4592 'Braun, T.' 9 0000-0002-9148-0200 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 116 _citation.language ? _citation.page_first 15007 _citation.page_last 15012 _citation.title 'Microfluidic protein isolation and sample preparation for high-resolution cryo-EM.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1907214116 _citation.pdbx_database_id_PubMed 31292253 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schmidli, C.' 1 ? primary 'Albiez, S.' 2 ? primary 'Rima, L.' 3 ? primary 'Righetto, R.' 4 ? primary 'Mohammed, I.' 5 ? primary 'Oliva, P.' 6 ? primary 'Kovacik, L.' 7 ? primary 'Stahlberg, H.' 8 0000-0002-1185-4592 primary 'Braun, T.' 9 0000-0002-9148-0200 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Capsid protein' _entity.formula_weight 17091.998 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; _entity_poly.pdbx_seq_one_letter_code_can ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 SER n 1 4 ILE n 1 5 THR n 1 6 THR n 1 7 PRO n 1 8 SER n 1 9 GLN n 1 10 PHE n 1 11 VAL n 1 12 PHE n 1 13 LEU n 1 14 SER n 1 15 SER n 1 16 ALA n 1 17 TRP n 1 18 ALA n 1 19 ASP n 1 20 PRO n 1 21 ILE n 1 22 GLU n 1 23 LEU n 1 24 ILE n 1 25 ASN n 1 26 LEU n 1 27 CYS n 1 28 THR n 1 29 ASN n 1 30 ALA n 1 31 LEU n 1 32 GLY n 1 33 ASN n 1 34 GLN n 1 35 PHE n 1 36 GLN n 1 37 THR n 1 38 GLN n 1 39 GLN n 1 40 ALA n 1 41 ARG n 1 42 THR n 1 43 VAL n 1 44 VAL n 1 45 GLN n 1 46 ARG n 1 47 GLN n 1 48 PHE n 1 49 SER n 1 50 GLU n 1 51 VAL n 1 52 TRP n 1 53 LYS n 1 54 PRO n 1 55 SER n 1 56 PRO n 1 57 GLN n 1 58 VAL n 1 59 THR n 1 60 VAL n 1 61 ARG n 1 62 PHE n 1 63 PRO n 1 64 ASP n 1 65 SER n 1 66 ASP n 1 67 PHE n 1 68 LYS n 1 69 VAL n 1 70 TYR n 1 71 ARG n 1 72 TYR n 1 73 ASN n 1 74 ALA n 1 75 VAL n 1 76 LEU n 1 77 ASP n 1 78 PRO n 1 79 LEU n 1 80 VAL n 1 81 THR n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 GLY n 1 86 ALA n 1 87 PHE n 1 88 ASP n 1 89 THR n 1 90 ARG n 1 91 ASN n 1 92 ARG n 1 93 ILE n 1 94 ILE n 1 95 GLU n 1 96 VAL n 1 97 GLU n 1 98 ASN n 1 99 GLN n 1 100 ALA n 1 101 ASN n 1 102 PRO n 1 103 THR n 1 104 THR n 1 105 ALA n 1 106 GLU n 1 107 THR n 1 108 LEU n 1 109 ASP n 1 110 ALA n 1 111 THR n 1 112 ARG n 1 113 ARG n 1 114 VAL n 1 115 ASP n 1 116 ASP n 1 117 ALA n 1 118 THR n 1 119 VAL n 1 120 ALA n 1 121 ILE n 1 122 ARG n 1 123 SER n 1 124 ALA n 1 125 ILE n 1 126 ASN n 1 127 ASN n 1 128 LEU n 1 129 ILE n 1 130 VAL n 1 131 GLU n 1 132 LEU n 1 133 ILE n 1 134 ARG n 1 135 GLY n 1 136 THR n 1 137 GLY n 1 138 SER n 1 139 TYR n 1 140 ASN n 1 141 ARG n 1 142 SER n 1 143 SER n 1 144 PHE n 1 145 GLU n 1 146 SER n 1 147 SER n 1 148 SER n 1 149 GLY n 1 150 LEU n 1 151 VAL n 1 152 TRP n 1 153 THR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 153 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Tobacco mosaic virus' _entity_src_nat.pdbx_ncbi_taxonomy_id 12242 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 TYR 2 3 3 TYR TYR A . n A 1 3 SER 3 4 4 SER SER A . n A 1 4 ILE 4 5 5 ILE ILE A . n A 1 5 THR 5 6 6 THR THR A . n A 1 6 THR 6 7 7 THR THR A . n A 1 7 PRO 7 8 8 PRO PRO A . n A 1 8 SER 8 9 9 SER SER A . n A 1 9 GLN 9 10 10 GLN GLN A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 VAL 11 12 12 VAL VAL A . n A 1 12 PHE 12 13 13 PHE PHE A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 SER 14 15 15 SER SER A . n A 1 15 SER 15 16 16 SER SER A . n A 1 16 ALA 16 17 17 ALA ALA A . n A 1 17 TRP 17 18 18 TRP TRP A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 PRO 20 21 21 PRO PRO A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 GLU 22 23 23 GLU GLU A . n A 1 23 LEU 23 24 24 LEU LEU A . n A 1 24 ILE 24 25 25 ILE ILE A . n A 1 25 ASN 25 26 26 ASN ASN A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 CYS 27 28 28 CYS CYS A . n A 1 28 THR 28 29 29 THR THR A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 ALA 30 31 31 ALA ALA A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 ASN 33 34 34 ASN ASN A . n A 1 34 GLN 34 35 35 GLN GLN A . n A 1 35 PHE 35 36 36 PHE PHE A . n A 1 36 GLN 36 37 37 GLN GLN A . n A 1 37 THR 37 38 38 THR THR A . n A 1 38 GLN 38 39 39 GLN GLN A . n A 1 39 GLN 39 40 40 GLN GLN A . n A 1 40 ALA 40 41 41 ALA ALA A . n A 1 41 ARG 41 42 42 ARG ARG A . n A 1 42 THR 42 43 43 THR THR A . n A 1 43 VAL 43 44 44 VAL VAL A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 GLN 45 46 46 GLN GLN A . n A 1 46 ARG 46 47 47 ARG ARG A . n A 1 47 GLN 47 48 48 GLN GLN A . n A 1 48 PHE 48 49 49 PHE PHE A . n A 1 49 SER 49 50 50 SER SER A . n A 1 50 GLU 50 51 51 GLU GLU A . n A 1 51 VAL 51 52 52 VAL VAL A . n A 1 52 TRP 52 53 53 TRP TRP A . n A 1 53 LYS 53 54 54 LYS LYS A . n A 1 54 PRO 54 55 55 PRO PRO A . n A 1 55 SER 55 56 56 SER SER A . n A 1 56 PRO 56 57 57 PRO PRO A . n A 1 57 GLN 57 58 58 GLN GLN A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 THR 59 60 60 THR THR A . n A 1 60 VAL 60 61 61 VAL VAL A . n A 1 61 ARG 61 62 62 ARG ARG A . n A 1 62 PHE 62 63 63 PHE PHE A . n A 1 63 PRO 63 64 64 PRO PRO A . n A 1 64 ASP 64 65 65 ASP ASP A . n A 1 65 SER 65 66 66 SER SER A . n A 1 66 ASP 66 67 67 ASP ASP A . n A 1 67 PHE 67 68 68 PHE PHE A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 VAL 69 70 70 VAL VAL A . n A 1 70 TYR 70 71 71 TYR TYR A . n A 1 71 ARG 71 72 72 ARG ARG A . n A 1 72 TYR 72 73 73 TYR TYR A . n A 1 73 ASN 73 74 74 ASN ASN A . n A 1 74 ALA 74 75 75 ALA ALA A . n A 1 75 VAL 75 76 76 VAL VAL A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 PRO 78 79 79 PRO PRO A . n A 1 79 LEU 79 80 80 LEU LEU A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 THR 81 82 82 THR THR A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 LEU 84 85 85 LEU LEU A . n A 1 85 GLY 85 86 86 GLY GLY A . n A 1 86 ALA 86 87 87 ALA ALA A . n A 1 87 PHE 87 88 88 PHE PHE A . n A 1 88 ASP 88 89 89 ASP ASP A . n A 1 89 THR 89 90 90 THR THR A . n A 1 90 ARG 90 91 91 ARG ARG A . n A 1 91 ASN 91 92 92 ASN ASN A . n A 1 92 ARG 92 93 93 ARG ARG A . n A 1 93 ILE 93 94 94 ILE ILE A . n A 1 94 ILE 94 95 95 ILE ILE A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 ASN 98 99 99 ASN ASN A . n A 1 99 GLN 99 100 100 GLN GLN A . n A 1 100 ALA 100 101 101 ALA ALA A . n A 1 101 ASN 101 102 102 ASN ASN A . n A 1 102 PRO 102 103 103 PRO PRO A . n A 1 103 THR 103 104 104 THR THR A . n A 1 104 THR 104 105 105 THR THR A . n A 1 105 ALA 105 106 106 ALA ALA A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 THR 107 108 108 THR THR A . n A 1 108 LEU 108 109 109 LEU LEU A . n A 1 109 ASP 109 110 110 ASP ASP A . n A 1 110 ALA 110 111 111 ALA ALA A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 ARG 112 113 113 ARG ARG A . n A 1 113 ARG 113 114 114 ARG ARG A . n A 1 114 VAL 114 115 115 VAL VAL A . n A 1 115 ASP 115 116 116 ASP ASP A . n A 1 116 ASP 116 117 117 ASP ASP A . n A 1 117 ALA 117 118 118 ALA ALA A . n A 1 118 THR 118 119 119 THR THR A . n A 1 119 VAL 119 120 120 VAL VAL A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 ILE 121 122 122 ILE ILE A . n A 1 122 ARG 122 123 123 ARG ARG A . n A 1 123 SER 123 124 124 SER SER A . n A 1 124 ALA 124 125 125 ALA ALA A . n A 1 125 ILE 125 126 126 ILE ILE A . n A 1 126 ASN 126 127 127 ASN ASN A . n A 1 127 ASN 127 128 128 ASN ASN A . n A 1 128 LEU 128 129 129 LEU LEU A . n A 1 129 ILE 129 130 130 ILE ILE A . n A 1 130 VAL 130 131 131 VAL VAL A . n A 1 131 GLU 131 132 132 GLU GLU A . n A 1 132 LEU 132 133 133 LEU LEU A . n A 1 133 ILE 133 134 134 ILE ILE A . n A 1 134 ARG 134 135 135 ARG ARG A . n A 1 135 GLY 135 136 136 GLY GLY A . n A 1 136 THR 136 137 137 THR THR A . n A 1 137 GLY 137 138 138 GLY GLY A . n A 1 138 SER 138 139 139 SER SER A . n A 1 139 TYR 139 140 140 TYR TYR A . n A 1 140 ASN 140 141 141 ASN ASN A . n A 1 141 ARG 141 142 142 ARG ARG A . n A 1 142 SER 142 143 143 SER SER A . n A 1 143 SER 143 144 144 SER SER A . n A 1 144 PHE 144 145 145 PHE PHE A . n A 1 145 GLU 145 146 146 GLU GLU A . n A 1 146 SER 146 147 147 SER SER A . n A 1 147 SER 147 148 148 SER SER A . n A 1 148 SER 148 149 149 SER SER A . n A 1 149 GLY 149 150 150 GLY GLY A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 VAL 151 152 152 VAL VAL A . n A 1 152 TRP 152 153 153 TRP TRP A . n A 1 153 THR 153 154 154 THR THR A . n # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6R7M _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6R7M _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6R7M _struct.title 'Tobacco Mosaic Virus (TMV)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6R7M _struct_keywords.text 'tobacco, mosaic, virus, TMV, cryo-EM, cryoWriter, microfluidic' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A348G6U1_9VIRU _struct_ref.pdbx_db_accession A0A348G6U1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT ; _struct_ref.pdbx_align_begin 9 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6R7M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A348G6U1 _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 40-meric 40 2 'helical asymmetric unit' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-40)' A 2 1 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.62864200 0.77769500 0.00000000 -69.28043 -0.77769500 0.62864200 0.00000000 195.91352 0.00000000 0.00000000 1.00000000 -49.35000 3 'helical symmetry operation' ? ? 0.87445000 0.48511500 0.00000000 -61.30589 -0.48511500 0.87445000 0.00000000 104.11829 0.00000000 0.00000000 1.00000000 -47.94000 4 'helical symmetry operation' ? ? 0.99256700 0.12169600 0.00000000 -19.48193 -0.12169600 0.99256700 0.00000000 22.01644 0.00000000 0.00000000 1.00000000 -46.53000 5 'helical symmetry operation' ? ? 0.96574500 -0.25949300 0.00000000 50.08411 0.25949300 0.96574500 0.00000000 -38.40312 0.00000000 0.00000000 1.00000000 -45.12000 6 'helical symmetry operation' ? ? 0.79790000 -0.60279000 0.00000000 137.23385 0.60279000 0.79790000 0.00000000 -68.31764 0.00000000 0.00000000 1.00000000 -43.71000 7 'helical symmetry operation' ? ? 0.51354100 -0.85806500 0.00000000 229.24128 0.85806500 0.51354100 0.00000000 -63.35885 0.00000000 -0.00000000 1.00000000 -42.30000 8 'helical symmetry operation' ? ? 0.15419300 -0.98804100 0.00000000 312.67103 0.98804100 0.15419300 0.00000000 -24.25086 0.00000000 -0.00000000 1.00000000 -40.89000 9 'helical symmetry operation' ? ? -0.22767100 -0.97373800 0.00000000 375.34027 0.97373800 -0.22767100 0.00000000 43.29558 0.00000000 -0.00000000 1.00000000 -39.48000 10 'helical symmetry operation' ? ? -0.57629000 -0.81724500 -0.00000000 408.09775 0.81724500 -0.57629000 0.00000000 129.41704 0.00000000 -0.00000000 1.00000000 -38.07000 11 'helical symmetry operation' ? ? -0.84075600 -0.54141500 -0.00000000 406.16005 0.54141500 -0.84075600 0.00000000 221.53762 0.00000000 -0.00000000 1.00000000 -36.66000 12 'helical symmetry operation' ? ? -0.98245000 -0.18652400 -0.00000000 369.81014 0.18652400 -0.98245000 0.00000000 306.20544 0.00000000 -0.00000000 1.00000000 -35.25000 13 'helical symmetry operation' ? ? -0.98068300 0.19560400 0.00000000 304.35600 -0.19560400 -0.98068300 -0.00000000 371.05690 -0.00000000 0.00000000 1.00000000 -33.84000 14 'helical symmetry operation' ? ? -0.83571200 0.54916900 0.00000000 219.35555 -0.54916900 -0.83571200 -0.00000000 406.62208 -0.00000000 0.00000000 1.00000000 -32.43000 15 'helical symmetry operation' ? ? -0.56870500 0.82254100 0.00000000 127.22099 -0.82254100 -0.56870500 -0.00000000 407.70756 -0.00000000 0.00000000 1.00000000 -31.02000 16 'helical symmetry operation' ? ? -0.21865400 0.97580200 0.00000000 41.40623 -0.97580200 -0.21865400 -0.00000000 374.15485 0.00000000 0.00000000 1.00000000 -29.61000 17 'helical symmetry operation' ? ? 0.16332600 0.98657200 0.00000000 -25.55763 -0.98657200 0.16332600 -0.00000000 310.86348 0.00000000 0.00000000 1.00000000 -28.20000 18 'helical symmetry operation' ? ? 0.52145600 0.85327800 0.00000000 -63.89221 -0.85327800 0.52145600 -0.00000000 227.07555 0.00000000 0.00000000 1.00000000 -26.79000 19 'helical symmetry operation' ? ? 0.80344100 0.59538400 0.00000000 -67.99970 -0.59538400 0.80344100 0.00000000 135.02619 0.00000000 0.00000000 1.00000000 -25.38000 20 'helical symmetry operation' ? ? 0.96810400 0.25054900 0.00000000 -37.28032 -0.25054900 0.96810400 0.00000000 48.15688 0.00000000 0.00000000 1.00000000 -23.97000 21 'helical symmetry operation' ? ? 0.99139900 -0.13087200 0.00000000 23.78015 0.13087200 0.99139900 0.00000000 -20.84729 0.00000000 0.00000000 1.00000000 -22.56000 22 'helical symmetry operation' ? ? 0.86992600 -0.49318300 0.00000000 106.26536 0.49318300 0.86992600 0.00000000 -61.91001 0.00000000 0.00000000 1.00000000 -21.15000 23 'helical symmetry operation' ? ? 0.62142100 -0.78347700 0.00000000 198.13043 0.78347700 0.62142100 0.00000000 -69.03509 0.00000000 0.00000000 1.00000000 -19.74000 24 'helical symmetry operation' ? ? 0.28217400 -0.95936300 0.00000000 285.96076 0.95936300 0.28217400 0.00000000 -41.18210 0.00000000 -0.00000000 1.00000000 -18.33000 25 'helical symmetry operation' ? ? -0.09827800 -0.99515900 0.00000000 356.93096 0.99515900 -0.09827800 0.00000000 17.58173 0.00000000 -0.00000000 1.00000000 -16.92000 26 'helical symmetry operation' ? ? -0.46437800 -0.88563700 0.00000000 400.67761 0.88563700 -0.46437800 0.00000000 98.67543 0.00000000 -0.00000000 1.00000000 -15.51000 27 'helical symmetry operation' ? ? -0.76266800 -0.64679000 -0.00000000 410.81261 0.64679000 -0.76266800 0.00000000 190.25729 0.00000000 -0.00000000 1.00000000 -14.10000 28 'helical symmetry operation' ? ? -0.94959000 -0.31349500 -0.00000000 385.85600 0.31349500 -0.94959000 0.00000000 278.95411 0.00000000 -0.00000000 1.00000000 -12.69000 29 'helical symmetry operation' ? ? -0.99784700 0.06557700 0.00000000 329.45207 -0.06557700 -0.99784700 -0.00000000 351.81393 -0.00000000 0.00000000 1.00000000 -11.28000 30 'helical symmetry operation' ? ? -0.90039500 0.43507400 0.00000000 249.83719 -0.43507400 -0.90039500 -0.00000000 398.19741 -0.00000000 0.00000000 1.00000000 -9.87000 31 'helical symmetry operation' ? ? -0.67146200 0.74103900 0.00000000 158.63711 -0.74103900 -0.67146200 -0.00000000 411.33142 -0.00000000 0.00000000 1.00000000 -8.46000 32 'helical symmetry operation' ? ? -0.34447900 0.93879400 0.00000000 69.16931 -0.93879400 -0.34447900 -0.00000000 389.29806 0.00000000 0.00000000 1.00000000 -7.05000 33 'helical symmetry operation' ? ? 0.03280600 0.99946200 0.00000000 -5.50170 -0.99946200 0.03280600 -0.00000000 335.31475 0.00000000 0.00000000 1.00000000 -5.64000 34 'helical symmetry operation' ? ? 0.40530100 0.91418300 0.00000000 -54.47209 -0.91418300 0.40530100 -0.00000000 257.26440 0.00000000 0.00000000 1.00000000 -4.23000 35 'helical symmetry operation' ? ? 0.71861200 0.69541100 0.00000000 -70.59096 -0.69541100 0.71861200 0.00000000 166.54428 0.00000000 0.00000000 1.00000000 -2.82000 36 'helical symmetry operation' ? ? 0.92698800 0.37509200 0.00000000 -51.50457 -0.37509200 0.92698800 0.00000000 76.40181 0.00000000 0.00000000 1.00000000 -1.41000 37 'helical symmetry operation' ? ? 0.92698800 -0.37509200 0.00000000 76.40181 0.37509200 0.92698800 0.00000000 -51.50457 0.00000000 0.00000000 1.00000000 1.41000 38 'helical symmetry operation' ? ? 0.71861200 -0.69541100 0.00000000 166.54428 0.69541100 0.71861200 0.00000000 -70.59096 0.00000000 0.00000000 1.00000000 2.82000 39 'helical symmetry operation' ? ? 0.40530100 -0.91418300 0.00000000 257.26440 0.91418300 0.40530100 0.00000000 -54.47209 0.00000000 -0.00000000 1.00000000 4.23000 40 'helical symmetry operation' ? ? 0.03280600 -0.99946200 0.00000000 335.31475 0.99946200 0.03280600 0.00000000 -5.50170 0.00000000 -0.00000000 1.00000000 5.64000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 6 ? SER A 14 ? THR A 7 SER A 15 5 ? 9 HELX_P HELX_P2 AA2 ASP A 19 ? LEU A 31 ? ASP A 20 LEU A 32 1 ? 13 HELX_P HELX_P3 AA3 THR A 37 ? VAL A 51 ? THR A 38 VAL A 52 1 ? 15 HELX_P HELX_P4 AA4 VAL A 75 ? PHE A 87 ? VAL A 76 PHE A 88 1 ? 13 HELX_P HELX_P5 AA5 ASN A 91 ? VAL A 96 ? ASN A 92 VAL A 97 1 ? 6 HELX_P HELX_P6 AA6 THR A 103 ? GLY A 135 ? THR A 104 GLY A 136 1 ? 33 HELX_P HELX_P7 AA7 ASN A 140 ? GLY A 149 ? ASN A 141 GLY A 150 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 17 ? ALA A 18 ? TRP A 18 ALA A 19 AA1 2 LYS A 68 ? TYR A 70 ? LYS A 69 TYR A 71 AA1 3 SER A 138 ? TYR A 139 ? SER A 139 TYR A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 18 ? N ALA A 19 O VAL A 69 ? O VAL A 70 AA1 2 3 N LYS A 68 ? N LYS A 69 O TYR A 139 ? O TYR A 140 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 56 ? ? -92.31 -64.61 2 1 ASN A 102 ? ? 59.58 82.08 # _pdbx_helical_symmetry.entry_id 6R7M _pdbx_helical_symmetry.number_of_operations 40 _pdbx_helical_symmetry.rotation_per_n_subunits 22.03 _pdbx_helical_symmetry.rise_per_n_subunits 1.41 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.entry_id 6R7M _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 6I5A _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 6I5A # _em_3d_reconstruction.entry_id 6R7M _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 52776 _em_3d_reconstruction.resolution 1.92 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Tobacco mosaic virus' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6R7M _em_image_scans.id 1 _em_image_scans.dimension_height 7420 _em_image_scans.dimension_width 7676 _em_image_scans.frames_per_image 30 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 0-30 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6R7M _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details CryoWriter _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6R7M _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6R7M _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 PHE N N N N 206 PHE CA C N S 207 PHE C C N N 208 PHE O O N N 209 PHE CB C N N 210 PHE CG C Y N 211 PHE CD1 C Y N 212 PHE CD2 C Y N 213 PHE CE1 C Y N 214 PHE CE2 C Y N 215 PHE CZ C Y N 216 PHE OXT O N N 217 PHE H H N N 218 PHE H2 H N N 219 PHE HA H N N 220 PHE HB2 H N N 221 PHE HB3 H N N 222 PHE HD1 H N N 223 PHE HD2 H N N 224 PHE HE1 H N N 225 PHE HE2 H N N 226 PHE HZ H N N 227 PHE HXT H N N 228 PRO N N N N 229 PRO CA C N S 230 PRO C C N N 231 PRO O O N N 232 PRO CB C N N 233 PRO CG C N N 234 PRO CD C N N 235 PRO OXT O N N 236 PRO H H N N 237 PRO HA H N N 238 PRO HB2 H N N 239 PRO HB3 H N N 240 PRO HG2 H N N 241 PRO HG3 H N N 242 PRO HD2 H N N 243 PRO HD3 H N N 244 PRO HXT H N N 245 SER N N N N 246 SER CA C N S 247 SER C C N N 248 SER O O N N 249 SER CB C N N 250 SER OG O N N 251 SER OXT O N N 252 SER H H N N 253 SER H2 H N N 254 SER HA H N N 255 SER HB2 H N N 256 SER HB3 H N N 257 SER HG H N N 258 SER HXT H N N 259 THR N N N N 260 THR CA C N S 261 THR C C N N 262 THR O O N N 263 THR CB C N R 264 THR OG1 O N N 265 THR CG2 C N N 266 THR OXT O N N 267 THR H H N N 268 THR H2 H N N 269 THR HA H N N 270 THR HB H N N 271 THR HG1 H N N 272 THR HG21 H N N 273 THR HG22 H N N 274 THR HG23 H N N 275 THR HXT H N N 276 TRP N N N N 277 TRP CA C N S 278 TRP C C N N 279 TRP O O N N 280 TRP CB C N N 281 TRP CG C Y N 282 TRP CD1 C Y N 283 TRP CD2 C Y N 284 TRP NE1 N Y N 285 TRP CE2 C Y N 286 TRP CE3 C Y N 287 TRP CZ2 C Y N 288 TRP CZ3 C Y N 289 TRP CH2 C Y N 290 TRP OXT O N N 291 TRP H H N N 292 TRP H2 H N N 293 TRP HA H N N 294 TRP HB2 H N N 295 TRP HB3 H N N 296 TRP HD1 H N N 297 TRP HE1 H N N 298 TRP HE3 H N N 299 TRP HZ2 H N N 300 TRP HZ3 H N N 301 TRP HH2 H N N 302 TRP HXT H N N 303 TYR N N N N 304 TYR CA C N S 305 TYR C C N N 306 TYR O O N N 307 TYR CB C N N 308 TYR CG C Y N 309 TYR CD1 C Y N 310 TYR CD2 C Y N 311 TYR CE1 C Y N 312 TYR CE2 C Y N 313 TYR CZ C Y N 314 TYR OH O N N 315 TYR OXT O N N 316 TYR H H N N 317 TYR H2 H N N 318 TYR HA H N N 319 TYR HB2 H N N 320 TYR HB3 H N N 321 TYR HD1 H N N 322 TYR HD2 H N N 323 TYR HE1 H N N 324 TYR HE2 H N N 325 TYR HH H N N 326 TYR HXT H N N 327 VAL N N N N 328 VAL CA C N S 329 VAL C C N N 330 VAL O O N N 331 VAL CB C N N 332 VAL CG1 C N N 333 VAL CG2 C N N 334 VAL OXT O N N 335 VAL H H N N 336 VAL H2 H N N 337 VAL HA H N N 338 VAL HB H N N 339 VAL HG11 H N N 340 VAL HG12 H N N 341 VAL HG13 H N N 342 VAL HG21 H N N 343 VAL HG22 H N N 344 VAL HG23 H N N 345 VAL HXT H N N 346 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 PHE N CA sing N N 195 PHE N H sing N N 196 PHE N H2 sing N N 197 PHE CA C sing N N 198 PHE CA CB sing N N 199 PHE CA HA sing N N 200 PHE C O doub N N 201 PHE C OXT sing N N 202 PHE CB CG sing N N 203 PHE CB HB2 sing N N 204 PHE CB HB3 sing N N 205 PHE CG CD1 doub Y N 206 PHE CG CD2 sing Y N 207 PHE CD1 CE1 sing Y N 208 PHE CD1 HD1 sing N N 209 PHE CD2 CE2 doub Y N 210 PHE CD2 HD2 sing N N 211 PHE CE1 CZ doub Y N 212 PHE CE1 HE1 sing N N 213 PHE CE2 CZ sing Y N 214 PHE CE2 HE2 sing N N 215 PHE CZ HZ sing N N 216 PHE OXT HXT sing N N 217 PRO N CA sing N N 218 PRO N CD sing N N 219 PRO N H sing N N 220 PRO CA C sing N N 221 PRO CA CB sing N N 222 PRO CA HA sing N N 223 PRO C O doub N N 224 PRO C OXT sing N N 225 PRO CB CG sing N N 226 PRO CB HB2 sing N N 227 PRO CB HB3 sing N N 228 PRO CG CD sing N N 229 PRO CG HG2 sing N N 230 PRO CG HG3 sing N N 231 PRO CD HD2 sing N N 232 PRO CD HD3 sing N N 233 PRO OXT HXT sing N N 234 SER N CA sing N N 235 SER N H sing N N 236 SER N H2 sing N N 237 SER CA C sing N N 238 SER CA CB sing N N 239 SER CA HA sing N N 240 SER C O doub N N 241 SER C OXT sing N N 242 SER CB OG sing N N 243 SER CB HB2 sing N N 244 SER CB HB3 sing N N 245 SER OG HG sing N N 246 SER OXT HXT sing N N 247 THR N CA sing N N 248 THR N H sing N N 249 THR N H2 sing N N 250 THR CA C sing N N 251 THR CA CB sing N N 252 THR CA HA sing N N 253 THR C O doub N N 254 THR C OXT sing N N 255 THR CB OG1 sing N N 256 THR CB CG2 sing N N 257 THR CB HB sing N N 258 THR OG1 HG1 sing N N 259 THR CG2 HG21 sing N N 260 THR CG2 HG22 sing N N 261 THR CG2 HG23 sing N N 262 THR OXT HXT sing N N 263 TRP N CA sing N N 264 TRP N H sing N N 265 TRP N H2 sing N N 266 TRP CA C sing N N 267 TRP CA CB sing N N 268 TRP CA HA sing N N 269 TRP C O doub N N 270 TRP C OXT sing N N 271 TRP CB CG sing N N 272 TRP CB HB2 sing N N 273 TRP CB HB3 sing N N 274 TRP CG CD1 doub Y N 275 TRP CG CD2 sing Y N 276 TRP CD1 NE1 sing Y N 277 TRP CD1 HD1 sing N N 278 TRP CD2 CE2 doub Y N 279 TRP CD2 CE3 sing Y N 280 TRP NE1 CE2 sing Y N 281 TRP NE1 HE1 sing N N 282 TRP CE2 CZ2 sing Y N 283 TRP CE3 CZ3 doub Y N 284 TRP CE3 HE3 sing N N 285 TRP CZ2 CH2 doub Y N 286 TRP CZ2 HZ2 sing N N 287 TRP CZ3 CH2 sing Y N 288 TRP CZ3 HZ3 sing N N 289 TRP CH2 HH2 sing N N 290 TRP OXT HXT sing N N 291 TYR N CA sing N N 292 TYR N H sing N N 293 TYR N H2 sing N N 294 TYR CA C sing N N 295 TYR CA CB sing N N 296 TYR CA HA sing N N 297 TYR C O doub N N 298 TYR C OXT sing N N 299 TYR CB CG sing N N 300 TYR CB HB2 sing N N 301 TYR CB HB3 sing N N 302 TYR CG CD1 doub Y N 303 TYR CG CD2 sing Y N 304 TYR CD1 CE1 sing Y N 305 TYR CD1 HD1 sing N N 306 TYR CD2 CE2 doub Y N 307 TYR CD2 HD2 sing N N 308 TYR CE1 CZ doub Y N 309 TYR CE1 HE1 sing N N 310 TYR CE2 CZ sing Y N 311 TYR CE2 HE2 sing N N 312 TYR CZ OH sing N N 313 TYR OH HH sing N N 314 TYR OXT HXT sing N N 315 VAL N CA sing N N 316 VAL N H sing N N 317 VAL N H2 sing N N 318 VAL CA C sing N N 319 VAL CA CB sing N N 320 VAL CA HA sing N N 321 VAL C O doub N N 322 VAL C OXT sing N N 323 VAL CB CG1 sing N N 324 VAL CB CG2 sing N N 325 VAL CB HB sing N N 326 VAL CG1 HG11 sing N N 327 VAL CG1 HG12 sing N N 328 VAL CG1 HG13 sing N N 329 VAL CG2 HG21 sing N N 330 VAL CG2 HG22 sing N N 331 VAL CG2 HG23 sing N N 332 VAL OXT HXT sing N N 333 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 39.5 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 12242 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Tobacco mosaic virus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 22.03 _em_helical_entity.axial_rise_per_subunit 1.41 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 72 _em_image_recording.average_exposure_time 6 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 523 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 2676 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' beta RELION 3 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM 3.6 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' 1.13.1 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION beta RELION 3 1 ? ? 12 RECONSTRUCTION beta RELION 3 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.14 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 4097 _em_virus_natural_host.organism 'Nicotiana tabacum' _em_virus_natural_host.strain ? # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter 180 _em_virus_shell.name CP _em_virus_shell.triangulation ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swiss National Science Foundation' Switzerland 200021_162521 1 'Swiss National Science Foundation' Switzerland 205320_166164 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6I5A # _atom_sites.entry_id 6R7M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_