HEADER HYDROLASE 29-MAR-19 6R7V TITLE TANNERELLA FORSYTHIA PROMIROLYSIN MUTANT E225A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIROLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: EXTRA N-TERMINAL RESIDUES GLYCINE-PROLINE RESULT FROM COMPND 6 THE CLONING STRATEGY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 3 ORGANISM_TAXID: 28112; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPEPTIDASE ZYMOGEN, METZINCIN, PAPPALYSIN FAMILY, TANNERELLA KEYWDS 2 FORSYTHIA, PERIODONTOPATHOGEN, PERIODONTAL DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-BANQUERI,T.GUEVARA,M.KSIAZEK,J.POTEMPA,F.X.GOMIS-RUTH REVDAT 3 24-JAN-24 6R7V 1 LINK REVDAT 2 29-JAN-20 6R7V 1 JRNL REVDAT 1 13-NOV-19 6R7V 0 JRNL AUTH T.GUEVARA,A.RODRIGUEZ-BANQUERI,M.KSIAZEK,J.POTEMPA, JRNL AUTH 2 F.X.GOMIS-RUTH JRNL TITL STRUCTURE-BASED MECHANISM OF CYSTEINE-SWITCH LATENCY AND OF JRNL TITL 2 CATALYSIS BY PAPPALYSIN-FAMILY METALLOPEPTIDASES. JRNL REF IUCRJ V. 7 18 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 31949901 JRNL DOI 10.1107/S2052252519013848 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.KONERU,M.KSIAZEK,I.WALIGORSKA,A.STRACZEK,M.LUKASIK, REMARK 1 AUTH 2 M.MADEJ,I.B.THOGERSEN,J.J.ENGHILD,J.POTEMPA REMARK 1 TITL MIROLYSIN, A LYSARGINASE FROM TANNERELLA FORSYTHIA, REMARK 1 TITL 2 PROTEOLYTICALLY INACTIVATES THE HUMAN CATHELICIDIN, LL-37. REMARK 1 REF BIOL.CHEM. V. 398 395 2017 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 27997347 REMARK 1 DOI 10.1515/HSZ-2016-0267 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 50134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.440 REMARK 3 FREE R VALUE TEST SET COUNT : 722 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 36 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.77 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1393 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3001 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1376 REMARK 3 BIN R VALUE (WORKING SET) : 0.3006 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73100 REMARK 3 B22 (A**2) : -0.26150 REMARK 3 B33 (A**2) : -1.46960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.160 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.060 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.062 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2565 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3492 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1206 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 466 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2565 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 340 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 11 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3293 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.80 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|21 - 56} REMARK 3 ORIGIN FOR THE GROUP (A): 52.0987 31.8864 8.0495 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.1295 REMARK 3 T33: 0.2177 T12: -0.0009 REMARK 3 T13: 0.0481 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.2864 L22: 2.8088 REMARK 3 L33: 2.2778 L12: -0.6914 REMARK 3 L13: -0.9856 L23: 1.1727 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: 0.1035 S13: 0.1457 REMARK 3 S21: -0.4668 S22: 0.1033 S23: -0.4104 REMARK 3 S31: -0.0799 S32: 0.1326 S33: -0.2407 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|57 - 95} REMARK 3 ORIGIN FOR THE GROUP (A): 27.7924 36.8171 18.4563 REMARK 3 T TENSOR REMARK 3 T11: -0.0946 T22: -0.0553 REMARK 3 T33: -0.0400 T12: -0.0072 REMARK 3 T13: -0.0067 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4331 L22: 1.6834 REMARK 3 L33: 0.6977 L12: 0.3884 REMARK 3 L13: -0.0107 L23: 0.1699 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.0384 S13: 0.0592 REMARK 3 S21: -0.0314 S22: -0.0133 S23: 0.1995 REMARK 3 S31: -0.0008 S32: -0.0751 S33: 0.0460 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|96 - 117} REMARK 3 ORIGIN FOR THE GROUP (A): 42.9107 46.7070 29.5161 REMARK 3 T TENSOR REMARK 3 T11: -0.0043 T22: 0.0216 REMARK 3 T33: -0.0328 T12: 0.0008 REMARK 3 T13: -0.0129 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.3723 L22: 1.8516 REMARK 3 L33: 1.0222 L12: 0.3085 REMARK 3 L13: 0.5675 L23: 0.0036 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.1580 S13: 0.1997 REMARK 3 S21: 0.1498 S22: -0.0255 S23: -0.0360 REMARK 3 S31: -0.0582 S32: 0.0114 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|118 - 234 A|999 - 999} REMARK 3 ORIGIN FOR THE GROUP (A): 31.6731 30.8645 13.3424 REMARK 3 T TENSOR REMARK 3 T11: 0.0140 T22: 0.0198 REMARK 3 T33: 0.0187 T12: -0.0131 REMARK 3 T13: 0.0025 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.7997 L22: 0.7028 REMARK 3 L33: 0.8535 L12: 0.3503 REMARK 3 L13: 0.2857 L23: 0.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0433 S13: -0.0864 REMARK 3 S21: -0.0520 S22: 0.0349 S23: -0.0087 REMARK 3 S31: 0.0840 S32: -0.0516 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|235 - 307 A|997 - 998} REMARK 3 ORIGIN FOR THE GROUP (A): 50.3146 36.0935 25.6427 REMARK 3 T TENSOR REMARK 3 T11: -0.0256 T22: -0.0325 REMARK 3 T33: 0.0317 T12: -0.0077 REMARK 3 T13: -0.0340 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0021 L22: 1.8834 REMARK 3 L33: 1.0395 L12: 0.0921 REMARK 3 L13: 0.3565 L23: -0.2921 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.0311 S13: -0.1273 REMARK 3 S21: 0.1631 S22: -0.0090 S23: -0.2810 REMARK 3 S31: 0.0044 S32: 0.0364 S33: -0.0503 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|308 - 327} REMARK 3 ORIGIN FOR THE GROUP (A): 32.6218 47.6102 4.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.1626 REMARK 3 T33: 0.0950 T12: -0.0559 REMARK 3 T13: -0.0454 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 7.0279 L22: 2.8083 REMARK 3 L33: 2.5085 L12: 1.9704 REMARK 3 L13: 0.1920 L23: -0.6345 REMARK 3 S TENSOR REMARK 3 S11: -0.2521 S12: 0.4669 S13: 0.6900 REMARK 3 S21: -0.3648 S22: 0.1933 S23: 0.1914 REMARK 3 S31: -0.2715 S32: 0.0390 S33: 0.0588 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2816 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 51.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6R7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROMIROLYSIN CRYSTALS WERE OBTAINED AT REMARK 280 20 DEGREES FROM DROPS CONTAINING 200 NL OF PROTEIN SOLUTION AT REMARK 280 0.6 MG/ML IN 5 MM TRIS-HCL PH 8.0, 50 MM SODIUM CHLORIDE AND 100 REMARK 280 NL OF RESERVOIR SOLUTION, WHICH COMPRISED 25% PEG 1500, 0.1 M REMARK 280 MIB BUFFER (MALONIC ACID, IMIDAZOLE AND BORIC ACID AT A 2:3:3 REMARK 280 MOLAR RATIO), PH 6.0., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 328 REMARK 465 SER A 329 REMARK 465 PHE A 330 REMARK 465 SER A 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 54 48.99 -144.78 REMARK 500 SER A 56 37.31 -93.37 REMARK 500 ASN A 164 100.35 -12.40 REMARK 500 ASP A 179 -65.45 -101.98 REMARK 500 ASP A 209 -146.24 56.51 REMARK 500 TYR A 216 64.54 -114.20 REMARK 500 ASP A 231 6.67 82.42 REMARK 500 ASN A 293 12.53 -165.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 HIS A 224 NE2 118.4 REMARK 620 3 HIS A 228 NE2 109.8 100.4 REMARK 620 4 HIS A 234 NE2 117.2 107.5 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 236 O REMARK 620 2 ASP A 239 OD1 83.3 REMARK 620 3 ASP A 239 OD2 91.3 54.0 REMARK 620 4 SER A 242 O 172.5 90.1 82.0 REMARK 620 5 GLN A 255 O 88.2 153.0 152.2 99.3 REMARK 620 6 GLY A 256 O 94.1 79.4 132.0 88.1 75.8 REMARK 620 7 HOH A 562 O 87.5 130.3 77.6 94.1 74.5 150.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 247 OD1 REMARK 620 2 ILE A 249 O 90.7 REMARK 620 3 THR A 252 O 143.4 91.8 REMARK 620 4 THR A 252 OG1 73.7 74.5 71.8 REMARK 620 5 HOH A 594 O 85.9 149.8 74.1 75.7 REMARK 620 6 HOH A 601 O 76.5 70.6 138.1 133.3 136.7 REMARK 620 7 HOH A 642 O 144.5 93.2 71.8 141.0 106.9 71.6 REMARK 620 8 HOH A 722 O 77.1 137.9 121.8 136.3 70.3 67.4 76.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R7U RELATED DB: PDB REMARK 900 SELENOMETHIONE VARIANT OF THE PRESENT ENTRY. DBREF1 6R7V A 20 331 UNP A0A0F7IPS1_TANFO DBREF2 6R7V A A0A0F7IPS1 20 331 SEQADV 6R7V GLY A 18 UNP A0A0F7IPS EXPRESSION TAG SEQADV 6R7V PRO A 19 UNP A0A0F7IPS EXPRESSION TAG SEQADV 6R7V ALA A 225 UNP A0A0F7IPS GLU 225 ENGINEERED MUTATION SEQRES 1 A 314 GLY PRO GLN ARG THR CYS GLY SER GLU LEU ASN MET GLU SEQRES 2 A 314 GLN ILE ARG ARG THR GLU PRO LEU LYS TYR GLN ARG ILE SEQRES 3 A 314 THR ASP TRP GLU ASN GLN ILE LYS LEU HIS SER ARG SER SEQRES 4 A 314 VAL PRO SER SER THR ILE LEU ILE PRO VAL VAL VAL HIS SEQRES 5 A 314 VAL VAL TYR ASN ASN SER ALA GLN ASN ILE SER ASP ALA SEQRES 6 A 314 GLN ILE ILE SER GLN ILE GLN VAL LEU ASN GLU ASP PHE SEQRES 7 A 314 ARG ARG MET ASN ALA ASP GLN ALA ASN THR PRO SER ALA SEQRES 8 A 314 PHE ALA ASN LEU ALA GLY ASN ALA ASN ILE GLU PHE LYS SEQRES 9 A 314 LEU ALA ARG ARG ASP PRO ASN GLY ASN THR THR ASN GLY SEQRES 10 A 314 ILE THR ARG THR SER THR SER THR GLU THR PHE SER MET SEQRES 11 A 314 GLU MET ASP ASN VAL LYS PHE SER ASN LEU GLY GLY ASN SEQRES 12 A 314 ASN ALA TRP ASN THR ARG ARG TYR LEU ASN ILE TRP VAL SEQRES 13 A 314 CYS ASN LEU GLY ASP ASP LEU LEU GLY TYR ALA GLN PHE SEQRES 14 A 314 PRO PHE GLU PHE GLN THR LYS PRO ASN THR ASP GLY VAL SEQRES 15 A 314 VAL ILE HIS TYR LYS HIS PHE GLY ARG ASP GLY SER ALA SEQRES 16 A 314 GLU SER PRO TYR ASP LYS GLY ARG THR ALA THR HIS ALA SEQRES 17 A 314 VAL GLY HIS TRP LEU ASP LEU ARG HIS ILE TRP GLY ASP SEQRES 18 A 314 ASP GLY GLY SER CYS SER GLY THR ASP ASN ILE ALA ASP SEQRES 19 A 314 THR PRO ASN GLN GLY GLY TYR ASN GLU GLY CYS PRO SER SEQRES 20 A 314 PHE PRO LYS THR ASP HIS CYS THR ASN THR SER PRO GLY SEQRES 21 A 314 VAL MET PHE MET ASN TYR MET ASP TYR THR TYR ASP ALA SEQRES 22 A 314 CYS MET ASN LEU PHE THR LYS GLY GLN VAL GLU ARG MET SEQRES 23 A 314 ARG SER LEU PHE ASP THR GLN THR GLY ILE ARG ARG GLU SEQRES 24 A 314 MET GLN ILE TYR ALA ASN GLU LEU THR ASN PRO LEU SER SEQRES 25 A 314 PHE SER HET CA A 401 1 HET CA A 402 1 HET ZN A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 ZN ZN 2+ FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *274(H2 O) HELIX 1 AA1 ASN A 28 GLU A 36 1 9 HELIX 2 AA2 GLU A 36 ILE A 50 1 15 HELIX 3 AA3 SER A 80 PHE A 95 1 16 HELIX 4 AA4 ASN A 99 THR A 105 5 7 HELIX 5 AA5 PRO A 106 ASN A 111 1 6 HELIX 6 AA6 ASP A 150 GLY A 158 5 9 HELIX 7 AA7 PHE A 186 PHE A 190 5 5 HELIX 8 AA8 LYS A 193 ASP A 197 5 5 HELIX 9 AA9 LYS A 204 PHE A 206 5 3 HELIX 10 AB1 GLY A 219 LEU A 230 1 12 HELIX 11 AB2 ASP A 289 MET A 292 5 4 HELIX 12 AB3 THR A 296 LEU A 306 1 11 HELIX 13 AB4 ARG A 315 TYR A 320 1 6 HELIX 14 AB5 TYR A 320 THR A 325 1 6 SHEET 1 AA1 3 ILE A 118 LEU A 122 0 SHEET 2 AA1 3 ILE A 62 TYR A 72 1 N ILE A 62 O GLU A 119 SHEET 3 AA1 3 ILE A 135 SER A 139 1 O THR A 136 N VAL A 68 SHEET 1 AA2 5 ILE A 118 LEU A 122 0 SHEET 2 AA2 5 ILE A 62 TYR A 72 1 N ILE A 62 O GLU A 119 SHEET 3 AA2 5 LEU A 169 CYS A 174 1 O LEU A 169 N PRO A 65 SHEET 4 AA2 5 VAL A 199 HIS A 202 1 O ILE A 201 N TRP A 172 SHEET 5 AA2 5 GLY A 182 ALA A 184 -1 N TYR A 183 O VAL A 200 SHEET 1 AA3 2 GLU A 260 GLY A 261 0 SHEET 2 AA3 2 TYR A 286 THR A 287 1 O TYR A 286 N GLY A 261 SSBOND 1 CYS A 243 CYS A 271 1555 1555 2.03 SSBOND 2 CYS A 262 CYS A 291 1555 1555 2.03 LINK SG CYS A 23 ZN ZN A 403 1555 1555 2.22 LINK NE2 HIS A 224 ZN ZN A 403 1555 1555 2.02 LINK NE2 HIS A 228 ZN ZN A 403 1555 1555 2.04 LINK NE2 HIS A 234 ZN ZN A 403 1555 1555 2.03 LINK O TRP A 236 CA CA A 401 1555 1555 2.29 LINK OD1 ASP A 239 CA CA A 401 1555 1555 2.44 LINK OD2 ASP A 239 CA CA A 401 1555 1555 2.35 LINK O SER A 242 CA CA A 401 1555 1555 2.30 LINK OD1 ASP A 247 CA CA A 402 1555 1555 2.40 LINK O ILE A 249 CA CA A 402 1555 1555 2.41 LINK O THR A 252 CA CA A 402 1555 1555 2.46 LINK OG1 THR A 252 CA CA A 402 1555 1555 2.52 LINK O GLN A 255 CA CA A 401 1555 1555 2.39 LINK O GLY A 256 CA CA A 401 1555 1555 2.38 LINK CA CA A 401 O HOH A 562 1555 1555 2.38 LINK CA CA A 402 O HOH A 594 1555 1555 2.48 LINK CA CA A 402 O HOH A 601 1555 1555 2.55 LINK CA CA A 402 O HOH A 642 1555 1555 2.37 LINK CA CA A 402 O HOH A 722 1555 1555 2.56 CISPEP 1 SER A 214 PRO A 215 0 9.12 CISPEP 2 PHE A 265 PRO A 266 0 -7.69 CISPEP 3 SER A 275 PRO A 276 0 12.85 SITE 1 AC1 6 TRP A 236 ASP A 239 SER A 242 GLN A 255 SITE 2 AC1 6 GLY A 256 HOH A 562 SITE 1 AC2 7 ASP A 247 ILE A 249 THR A 252 HOH A 594 SITE 2 AC2 7 HOH A 601 HOH A 642 HOH A 722 SITE 1 AC3 4 CYS A 23 HIS A 224 HIS A 228 HIS A 234 SITE 1 AC4 10 ARG A 55 PRO A 127 ASN A 164 ARG A 167 SITE 2 AC4 10 GLU A 260 GLY A 261 CYS A 262 PRO A 263 SITE 3 AC4 10 HOH A 511 HOH A 613 SITE 1 AC5 7 ASN A 164 THR A 165 ARG A 166 PRO A 194 SITE 2 AC5 7 ASN A 195 ALA A 290 HOH A 618 SITE 1 AC6 7 SER A 59 GLN A 255 GLY A 256 GLY A 257 SITE 2 AC6 7 TYR A 258 ASN A 259 ASP A 269 SITE 1 AC7 6 TRP A 46 GLU A 47 PHE A 188 ASP A 231 SITE 2 AC7 6 ARG A 233 HOH A 621 CRYST1 47.330 67.250 79.640 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012557 0.00000