HEADER HYDROLASE 29-MAR-19 6R7W TITLE TANNERELLA FORSYTHIA MATURE MIROLYSIN IN COMPLEX WITH A CLEAVED TITLE 2 PEPTIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIROLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MATURE MIROLYSIN SPANNING SEGMENT R55-S331.; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PUTATIVE LIPOPROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: THE CITRATE MOLECULE MIMICS AN AMINO ACID LEFT BEHIND COMPND 11 AFTER SUBSTRATE CLEAVAGE AND WAS THUS ASSIGNED THE RESIDUE NUMBER -1. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 3 ORGANISM_TAXID: 28112; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA (STRAIN ATCC 43037 / JCM SOURCE 8 10827 / FDC 338); SOURCE 9 ORGANISM_TAXID: 203275; SOURCE 10 STRAIN: ATCC 43037 / JCM 10827 / FDC 338; SOURCE 11 GENE: BFO_2662; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPEPTIDASE ZYMOGEN, METZINCIN, PAPPALYSIN FAMILY, TANNERELLA KEYWDS 2 FORSYTHIA, PERIODONTOPATHOGEN, PERIODONTAL DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-BANQUERI,T.GUEVARA,M.KSIAZEK,J.POTEMPA,F.X.GOMIS-RUTH REVDAT 3 24-JAN-24 6R7W 1 REMARK REVDAT 2 29-JAN-20 6R7W 1 JRNL REVDAT 1 13-NOV-19 6R7W 0 JRNL AUTH T.GUEVARA,A.RODRIGUEZ-BANQUERI,M.KSIAZEK,J.POTEMPA, JRNL AUTH 2 F.X.GOMIS-RUTH JRNL TITL STRUCTURE-BASED MECHANISM OF CYSTEINE-SWITCH LATENCY AND OF JRNL TITL 2 CATALYSIS BY PAPPALYSIN-FAMILY METALLOPEPTIDASES. JRNL REF IUCRJ V. 7 18 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 31949901 JRNL DOI 10.1107/S2052252519013848 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.KONERU,M.KSIAZEK,I.WALIGORSKA,A.STRACZEK,M.LUKASIK, REMARK 1 AUTH 2 M.MADEJ,I.B.THOGERSEN,J.J.ENGHILD,J.POTEMPA REMARK 1 TITL MIROLYSIN, A LYSARGINASE FROM TANNERELLA FORSYTHIA, REMARK 1 TITL 2 PROTEOLYTICALLY INACTIVATES THE HUMAN CATHELICIDIN, LL-37. REMARK 1 REF BIOL.CHEM. V. 398 395 2017 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 27997347 REMARK 1 DOI 10.1515/HSZ-2016-0267 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 41508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.750 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 36 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.54 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1153 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1496 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1133 REMARK 3 BIN R VALUE (WORKING SET) : 0.1491 REMARK 3 BIN FREE R VALUE : 0.1878 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75130 REMARK 3 B22 (A**2) : 1.98800 REMARK 3 B33 (A**2) : -0.23680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.140 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.071 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.061 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2383 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3249 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1115 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 434 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2383 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 317 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3172 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|58 - 95} REMARK 3 ORIGIN FOR THE GROUP (A): -1.4075 1.6111 -17.4249 REMARK 3 T TENSOR REMARK 3 T11: -0.0262 T22: -0.0280 REMARK 3 T33: -0.0000 T12: -0.0050 REMARK 3 T13: -0.0180 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4564 L22: 0.6500 REMARK 3 L33: 0.7431 L12: -0.1838 REMARK 3 L13: 0.2489 L23: -0.2497 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.0275 S13: 0.0201 REMARK 3 S21: 0.0963 S22: -0.0197 S23: -0.0998 REMARK 3 S31: -0.0986 S32: 0.0708 S33: 0.0533 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|96 - 117} REMARK 3 ORIGIN FOR THE GROUP (A): -9.4175 12.5728 -33.6086 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: -0.0042 REMARK 3 T33: 0.0028 T12: -0.0222 REMARK 3 T13: -0.0044 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.4316 REMARK 3 L33: 1.5975 L12: -0.3663 REMARK 3 L13: -0.3091 L23: -0.6479 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.0645 S13: 0.0194 REMARK 3 S21: -0.0588 S22: 0.0099 S23: -0.1094 REMARK 3 S31: -0.1081 S32: -0.0022 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|118 - 234 A|999 - 999} REMARK 3 ORIGIN FOR THE GROUP (A): -8.8183 -2.1844 -13.4177 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: -0.0242 REMARK 3 T33: -0.0121 T12: 0.0028 REMARK 3 T13: -0.0070 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.3992 L22: 0.4004 REMARK 3 L33: 0.9050 L12: 0.0237 REMARK 3 L13: 0.2451 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.0503 S13: -0.0173 REMARK 3 S21: 0.0689 S22: 0.0063 S23: -0.0276 REMARK 3 S31: -0.0368 S32: -0.0184 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|235 - 307 A|997 - 998} REMARK 3 ORIGIN FOR THE GROUP (A): -20.4769 4.2224 -32.3335 REMARK 3 T TENSOR REMARK 3 T11: -0.0038 T22: -0.0085 REMARK 3 T33: -0.0052 T12: -0.0005 REMARK 3 T13: 0.0032 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6098 L22: 0.5549 REMARK 3 L33: 0.7129 L12: -0.1623 REMARK 3 L13: 0.1204 L23: -0.0760 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0261 S13: -0.0213 REMARK 3 S21: -0.0313 S22: 0.0195 S23: 0.0347 REMARK 3 S31: -0.0257 S32: -0.0769 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|308 - 327} REMARK 3 ORIGIN FOR THE GROUP (A): -9.8470 15.7649 -7.3134 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: -0.0482 REMARK 3 T33: -0.0494 T12: 0.0302 REMARK 3 T13: -0.0417 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 4.2688 L22: 1.8175 REMARK 3 L33: 2.2832 L12: -0.9847 REMARK 3 L13: 0.2285 L23: -0.5268 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: -0.3594 S13: 0.3004 REMARK 3 S21: 0.2496 S22: 0.0365 S23: -0.0972 REMARK 3 S31: -0.4080 S32: -0.0910 S33: 0.0847 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|1 - 14} REMARK 3 ORIGIN FOR THE GROUP (A): -13.6020 -17.8897 -30.4762 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: -0.0407 REMARK 3 T33: 0.0243 T12: -0.0454 REMARK 3 T13: 0.0144 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 1.8742 L22: 10.5852 REMARK 3 L33: 2.3191 L12: -0.9024 REMARK 3 L13: -1.2781 L23: 2.4458 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: 0.1608 S13: -0.3795 REMARK 3 S21: -0.4562 S22: -0.1076 S23: -0.0551 REMARK 3 S31: 0.1187 S32: -0.2424 S33: 0.1870 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|-1 - -1} REMARK 3 ORIGIN FOR THE GROUP (A): -18.8111 -5.1651 -20.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.0120 T22: 0.0074 REMARK 3 T33: 0.0091 T12: -0.0136 REMARK 3 T13: 0.0051 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6748 L22: 0.7460 REMARK 3 L33: 0.6369 L12: -3.7861 REMARK 3 L13: 0.5678 L23: -1.5328 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.4765 S13: -0.0143 REMARK 3 S21: 0.1543 S22: 0.0088 S23: -0.0747 REMARK 3 S31: 0.5015 S32: -0.0221 S33: 0.0136 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 54.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6R7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF THE MIROLYSIN PRODUCT REMARK 280 COMPLEX WERE OBTAINED AT AN OD280 OF 19.7 IN 5 MM TRIS-HCL PH REMARK 280 8.0, 50 MM SODIUM CHLORIDE, 5 MM CALCIUM CHLORIDE AT 4 DEGREES REMARK 280 FROM DROPS CONTAINING 200 NL OF PROTEIN SOLUTION AND 100 NL OF REMARK 280 RESERVOIR SOLUTION, WHICH COMPRISED 40% ETHANOL, 5% PEG 1000, REMARK 280 0.1 M PHOSPHATE-CITRATE BUFFER, PH 4.2., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.30500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 55 REMARK 465 SER A 56 REMARK 465 VAL A 57 REMARK 465 LEU A 328 REMARK 465 SER A 329 REMARK 465 PHE A 330 REMARK 465 SER A 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 164 96.97 -11.60 REMARK 500 ASP A 178 -118.46 46.95 REMARK 500 ASP A 209 -143.05 53.80 REMARK 500 TYR A 216 65.96 -116.89 REMARK 500 ASN A 293 14.00 -153.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 836 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HIS A 228 NE2 99.1 REMARK 620 3 HIS A 234 NE2 110.9 105.6 REMARK 620 4 CIT A 406 O5 112.4 120.8 107.7 REMARK 620 5 CIT A 406 O6 163.2 80.1 85.3 55.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 236 O REMARK 620 2 ASP A 239 OD1 83.2 REMARK 620 3 ASP A 239 OD2 91.5 53.5 REMARK 620 4 SER A 242 O 170.6 90.5 79.2 REMARK 620 5 GLN A 255 O 86.5 152.2 152.9 102.1 REMARK 620 6 GLY A 256 O 95.3 78.8 130.5 90.2 76.6 REMARK 620 7 HOH A 507 O 86.2 129.1 77.3 92.4 75.6 152.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 247 OD1 REMARK 620 2 ILE A 249 O 90.3 REMARK 620 3 THR A 252 O 142.5 90.7 REMARK 620 4 THR A 252 OG1 73.2 73.1 71.4 REMARK 620 5 HOH A 621 O 84.3 147.0 74.9 74.2 REMARK 620 6 HOH A 655 O 147.3 95.4 69.7 139.1 106.6 REMARK 620 7 HOH A 673 O 74.1 70.6 140.5 130.1 137.4 77.6 REMARK 620 8 HOH A 749 O 77.9 138.8 122.2 136.8 71.6 76.7 68.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R7U RELATED DB: PDB REMARK 900 SELENOMETHIONINE VARIANT OF THE MIROLYSIN ZYMOGEN REMARK 900 RELATED ID: 6R7V RELATED DB: PDB REMARK 900 MIROLYSIN ZYMOGEN DBREF1 6R7W A 55 331 UNP A0A0F7IPS1_TANFO DBREF2 6R7W A A0A0F7IPS1 55 331 DBREF 6R7W B 1 14 UNP G8ULV2 G8ULV2_TANFA 110 123 SEQRES 1 A 277 ARG SER VAL PRO SER SER THR ILE LEU ILE PRO VAL VAL SEQRES 2 A 277 VAL HIS VAL VAL TYR ASN ASN SER ALA GLN ASN ILE SER SEQRES 3 A 277 ASP ALA GLN ILE ILE SER GLN ILE GLN VAL LEU ASN GLU SEQRES 4 A 277 ASP PHE ARG ARG MET ASN ALA ASP GLN ALA ASN THR PRO SEQRES 5 A 277 SER ALA PHE ALA ASN LEU ALA GLY ASN ALA ASN ILE GLU SEQRES 6 A 277 PHE LYS LEU ALA ARG ARG ASP PRO ASN GLY ASN THR THR SEQRES 7 A 277 ASN GLY ILE THR ARG THR SER THR SER THR GLU THR PHE SEQRES 8 A 277 SER MET GLU MET ASP ASN VAL LYS PHE SER ASN LEU GLY SEQRES 9 A 277 GLY ASN ASN ALA TRP ASN THR ARG ARG TYR LEU ASN ILE SEQRES 10 A 277 TRP VAL CYS ASN LEU GLY ASP ASP LEU LEU GLY TYR ALA SEQRES 11 A 277 GLN PHE PRO PHE GLU PHE GLN THR LYS PRO ASN THR ASP SEQRES 12 A 277 GLY VAL VAL ILE HIS TYR LYS HIS PHE GLY ARG ASP GLY SEQRES 13 A 277 SER ALA GLU SER PRO TYR ASP LYS GLY ARG THR ALA THR SEQRES 14 A 277 HIS GLU VAL GLY HIS TRP LEU ASP LEU ARG HIS ILE TRP SEQRES 15 A 277 GLY ASP ASP GLY GLY SER CYS SER GLY THR ASP ASN ILE SEQRES 16 A 277 ALA ASP THR PRO ASN GLN GLY GLY TYR ASN GLU GLY CYS SEQRES 17 A 277 PRO SER PHE PRO LYS THR ASP HIS CYS THR ASN THR SER SEQRES 18 A 277 PRO GLY VAL MET PHE MET ASN TYR MET ASP TYR THR TYR SEQRES 19 A 277 ASP ALA CYS MET ASN LEU PHE THR LYS GLY GLN VAL GLU SEQRES 20 A 277 ARG MET ARG SER LEU PHE ASP THR GLN THR GLY ILE ARG SEQRES 21 A 277 ARG GLU MET GLN ILE TYR ALA ASN GLU LEU THR ASN PRO SEQRES 22 A 277 LEU SER PHE SER SEQRES 1 B 14 LYS ARG ASP PRO VAL TYR PHE ILE LYS LEU SER THR ILE SEQRES 2 B 14 LYS HET CA A 401 1 HET CA A 402 1 HET ZN A 403 1 HET EOH A 404 3 HET EOH A 405 3 HET CIT A 406 13 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM EOH ETHANOL HETNAM CIT CITRIC ACID FORMUL 3 CA 2(CA 2+) FORMUL 5 ZN ZN 2+ FORMUL 6 EOH 2(C2 H6 O) FORMUL 8 CIT C6 H8 O7 FORMUL 9 HOH *348(H2 O) HELIX 1 AA1 ASN A 74 ASN A 78 5 5 HELIX 2 AA2 SER A 80 ARG A 96 1 17 HELIX 3 AA3 ASN A 99 THR A 105 5 7 HELIX 4 AA4 PRO A 106 ASN A 111 1 6 HELIX 5 AA5 ASP A 150 GLY A 158 5 9 HELIX 6 AA6 PHE A 186 PHE A 190 5 5 HELIX 7 AA7 LYS A 193 ASP A 197 5 5 HELIX 8 AA8 LYS A 204 PHE A 206 5 3 HELIX 9 AA9 GLY A 219 LEU A 230 1 12 HELIX 10 AB1 TYR A 288 MET A 292 5 5 HELIX 11 AB2 THR A 296 LEU A 306 1 11 HELIX 12 AB3 GLU A 316 ASN A 326 1 11 HELIX 13 AB4 PHE B 7 THR B 12 1 6 SHEET 1 AA1 3 ILE A 118 LEU A 122 0 SHEET 2 AA1 3 ILE A 62 TYR A 72 1 N ILE A 62 O GLU A 119 SHEET 3 AA1 3 ILE A 135 SER A 139 1 O THR A 136 N VAL A 70 SHEET 1 AA2 5 ILE A 118 LEU A 122 0 SHEET 2 AA2 5 ILE A 62 TYR A 72 1 N ILE A 62 O GLU A 119 SHEET 3 AA2 5 LEU A 169 CYS A 174 1 O LEU A 169 N PRO A 65 SHEET 4 AA2 5 VAL A 199 HIS A 202 1 O ILE A 201 N TRP A 172 SHEET 5 AA2 5 GLY A 182 ALA A 184 -1 N TYR A 183 O VAL A 200 SSBOND 1 CYS A 243 CYS A 271 1555 1555 2.06 SSBOND 2 CYS A 262 CYS A 291 1555 1555 2.03 LINK NE2 HIS A 224 ZN ZN A 403 1555 1555 2.03 LINK NE2 HIS A 228 ZN ZN A 403 1555 1555 2.00 LINK NE2 HIS A 234 ZN ZN A 403 1555 1555 2.03 LINK O TRP A 236 CA CA A 401 1555 1555 2.34 LINK OD1 ASP A 239 CA CA A 401 1555 1555 2.45 LINK OD2 ASP A 239 CA CA A 401 1555 1555 2.39 LINK O SER A 242 CA CA A 401 1555 1555 2.33 LINK OD1 ASP A 247 CA CA A 402 1555 1555 2.39 LINK O ILE A 249 CA CA A 402 1555 1555 2.41 LINK O THR A 252 CA CA A 402 1555 1555 2.47 LINK OG1 THR A 252 CA CA A 402 1555 1555 2.54 LINK O GLN A 255 CA CA A 401 1555 1555 2.39 LINK O GLY A 256 CA CA A 401 1555 1555 2.40 LINK CA CA A 401 O HOH A 507 1555 1555 2.41 LINK CA CA A 402 O HOH A 621 1555 1555 2.49 LINK CA CA A 402 O HOH A 655 1555 1555 2.44 LINK CA CA A 402 O HOH A 673 1555 1555 2.51 LINK CA CA A 402 O HOH A 749 1555 1555 2.53 LINK ZN ZN A 403 O5 CIT A 406 1555 1555 1.93 LINK ZN ZN A 403 O6 CIT A 406 1555 1555 2.63 CISPEP 1 SER A 214 PRO A 215 0 7.58 CISPEP 2 PHE A 265 PRO A 266 0 -1.61 CISPEP 3 SER A 275 PRO A 276 0 13.56 SITE 1 AC1 6 TRP A 236 ASP A 239 SER A 242 GLN A 255 SITE 2 AC1 6 GLY A 256 HOH A 507 SITE 1 AC2 7 ASP A 247 ILE A 249 THR A 252 HOH A 621 SITE 2 AC2 7 HOH A 655 HOH A 673 HOH A 749 SITE 1 AC3 4 HIS A 224 HIS A 228 HIS A 234 CIT A 406 SITE 1 AC4 5 THR A 144 PHE A 145 ASP A 251 HOH A 595 SITE 2 AC4 5 HOH A 700 SITE 1 AC5 4 ASP A 209 LYS A 218 CYS A 243 HOH A 704 SITE 1 AC6 14 GLY A 182 TYR A 183 ALA A 184 HIS A 224 SITE 2 AC6 14 GLU A 225 HIS A 228 HIS A 234 TYR A 286 SITE 3 AC6 14 ZN A 403 HOH A 520 HOH A 559 HOH A 620 SITE 4 AC6 14 LYS B 1 ARG B 2 CRYST1 40.610 66.490 96.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000