HEADER TRANSPORT PROTEIN 30-MAR-19 6R81 TITLE MULTIDRUG RESISTANCE TRANSPORTER BMRA MUTANT E504A BOUND WITH ATP AND TITLE 2 MG SOLVED BY CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID A EXPORT ATP-BINDING/PERMEASE PROTEIN MSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_3307; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43, DELTA-ACRB; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MEMBRANE PROTEIN, ABC TRANSPORTER, MULTIDRUG RESISTANCE, TRANSPORT KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR B.WISEMAN,V.CHAPTAL,V.ZAMPIERI,S.MAGNARD,M.HOGBOM,P.FALSON REVDAT 3 02-FEB-22 6R81 1 JRNL REVDAT 2 19-JAN-22 6R81 1 REMARK REVDAT 1 06-MAY-20 6R81 0 JRNL AUTH V.CHAPTAL,V.ZAMPIERI,B.WISEMAN,C.ORELLE,J.MARTIN,K.A.NGUYEN, JRNL AUTH 2 A.GOBET,M.DI CESARE,S.MAGNARD,W.JAVED,J.EID,A.KILBURG, JRNL AUTH 3 M.PEUCHMAUR,J.MARCOUX,L.MONTICELLI,M.HOGBOM,G.SCHOEHN, JRNL AUTH 4 J.M.JAULT,A.BOUMENDJEL,P.FALSON JRNL TITL SUBSTRATE-BOUND AND SUBSTRATE-FREE OUTWARD-FACING STRUCTURES JRNL TITL 2 OF A MULTIDRUG ABC EXPORTER. JRNL REF SCI ADV V. 8 G9215 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35080979 JRNL DOI 10.1126/SCIADV.ABG9215 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CTFFIND, COOT, UCSF REMARK 3 CHIMERA, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 187.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 128372 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6R81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101551. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MULTIDRUG RESISTANCE REMARK 245 TRANSPORTER FROM BACILLUS REMARK 245 SUBTILIS BOUND WITH ATP AND MG. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : MUTANT E504A REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 3477 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 GLY A 270 REMARK 465 MET A 271 REMARK 465 GLN A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 GLU A 277 REMARK 465 LEU A 278 REMARK 465 MET B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 VAL B 273 REMARK 465 SER B 274 REMARK 465 SER B 275 REMARK 465 GLY B 276 REMARK 465 GLU B 277 REMARK 465 LEU B 278 REMARK 465 THR B 279 REMARK 465 ALA B 280 REMARK 465 GLY B 281 REMARK 465 LYS B 587 REMARK 465 ALA B 588 REMARK 465 GLY B 589 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 422 O2B ATP A 601 1.30 REMARK 500 CB THR A 381 O1A ATP A 601 1.37 REMARK 500 O MET A 478 N7 ATP A 602 1.48 REMARK 500 O GLY B 374 NZ LYS B 380 1.54 REMARK 500 OG1 THR A 381 O1A ATP A 601 1.63 REMARK 500 O MET A 478 C8 ATP A 602 1.73 REMARK 500 O ARG B 432 SG CYS B 436 1.91 REMARK 500 N GLY B 374 CE LYS B 380 1.92 REMARK 500 O ARG A 432 SG CYS A 436 1.93 REMARK 500 O ALA A 71 N PHE A 75 1.96 REMARK 500 NH1 ARG A 475 CD ARG B 475 1.97 REMARK 500 N GLY B 374 NZ LYS B 380 2.02 REMARK 500 O THR B 381 N LEU B 383 2.02 REMARK 500 O ILE A 477 O LEU A 479 2.06 REMARK 500 O SER B 58 N SER B 60 2.07 REMARK 500 CE1 TYR A 350 N6 ATP A 601 2.07 REMARK 500 OH TYR A 350 SD MET B 478 2.07 REMARK 500 O THR B 381 N PHE B 384 2.09 REMARK 500 CZ TYR A 350 N6 ATP A 601 2.10 REMARK 500 CD ARG A 475 NH1 ARG B 475 2.15 REMARK 500 NE2 GLN A 422 PB ATP A 601 2.16 REMARK 500 O LEU A 72 N VAL A 76 2.16 REMARK 500 NE ARG A 475 NH1 ARG B 475 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 476 CA GLY A 476 C -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 75 C - N - CA ANGL. DEV. = -18.0 DEGREES REMARK 500 GLU A 325 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ILE A 477 CG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 MET A 478 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU A 479 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 SER A 480 CB - CA - C ANGL. DEV. = -20.9 DEGREES REMARK 500 GLU B 325 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 THR B 381 OG1 - CB - CG2 ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -50.03 -120.20 REMARK 500 SER A 60 -128.24 62.95 REMARK 500 ASN A 61 -39.59 -36.32 REMARK 500 ALA A 119 75.45 52.98 REMARK 500 LEU A 159 46.82 -99.67 REMARK 500 ILE A 209 -50.91 -123.10 REMARK 500 GLU A 212 38.11 -97.74 REMARK 500 ALA A 218 5.19 -67.44 REMARK 500 SER A 219 -8.47 74.20 REMARK 500 GLU A 325 62.11 36.11 REMARK 500 LEU A 357 136.92 -174.71 REMARK 500 GLU A 359 56.84 36.81 REMARK 500 SER A 392 77.55 51.98 REMARK 500 THR A 430 80.63 55.28 REMARK 500 GLU A 440 -6.03 60.67 REMARK 500 THR A 444 71.07 55.01 REMARK 500 PHE A 460 43.49 -105.49 REMARK 500 PRO A 465 82.39 -68.80 REMARK 500 ASN A 466 88.04 62.58 REMARK 500 GLN A 467 -44.54 -22.71 REMARK 500 GLU A 474 -78.71 -73.87 REMARK 500 ARG A 475 20.60 -76.02 REMARK 500 MET A 478 -71.59 -42.06 REMARK 500 SER A 480 -154.17 -109.45 REMARK 500 ASN A 496 70.40 53.50 REMARK 500 ARG A 536 76.99 60.43 REMARK 500 LEU A 537 -7.82 -53.35 REMARK 500 SER A 538 6.41 -66.95 REMARK 500 ARG A 571 -2.60 63.47 REMARK 500 MET B 59 47.28 -73.71 REMARK 500 SER B 60 -163.50 62.50 REMARK 500 ALA B 119 75.71 52.57 REMARK 500 LEU B 159 46.92 -100.19 REMARK 500 ILE B 209 -50.64 -122.87 REMARK 500 GLU B 212 38.32 -97.11 REMARK 500 ALA B 218 4.54 -67.10 REMARK 500 SER B 219 -8.09 74.29 REMARK 500 GLU B 325 62.32 36.98 REMARK 500 LEU B 357 136.67 -174.91 REMARK 500 GLU B 359 56.67 37.86 REMARK 500 THR B 382 -4.18 -53.97 REMARK 500 SER B 392 77.52 52.45 REMARK 500 THR B 430 79.95 56.16 REMARK 500 TYR B 437 20.56 -79.89 REMARK 500 GLU B 440 -6.63 61.37 REMARK 500 THR B 444 71.25 55.11 REMARK 500 PHE B 460 43.29 -105.33 REMARK 500 PRO B 465 82.24 -68.10 REMARK 500 ASN B 466 87.49 63.15 REMARK 500 GLN B 467 -44.14 -23.36 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 118 ALA A 119 132.04 REMARK 500 GLU A 323 GLU A 324 -148.07 REMARK 500 GLU A 324 GLU A 325 148.91 REMARK 500 GLU A 335 ASN A 336 -143.52 REMARK 500 SER A 428 GLY A 429 -148.03 REMARK 500 THR A 430 ILE A 431 -141.48 REMARK 500 ASN B 118 ALA B 119 132.39 REMARK 500 GLU B 323 GLU B 324 -148.25 REMARK 500 GLU B 324 GLU B 325 148.31 REMARK 500 GLU B 335 ASN B 336 -143.18 REMARK 500 SER B 428 GLY B 429 -147.89 REMARK 500 THR B 430 ILE B 431 -141.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 58 -15.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 381 OG1 REMARK 620 2 GLN A 422 OE1 70.7 REMARK 620 3 ASP A 503 OD1 105.2 143.3 REMARK 620 4 ASP A 503 OD2 134.7 153.9 48.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 422 OE1 REMARK 620 2 ASP B 503 OD1 142.3 REMARK 620 3 ASP B 503 OD2 154.5 48.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R72 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE TO BE REPORTED IN THE SAME CITATION REMARK 900 RELATED ID: EMD-4749 RELATED DB: EMDB REMARK 900 MULTIDRUG RESISTANCE TRANSPORTER BMRA MUTANT E504A BOUND WITH ATP REMARK 900 AND MG SOLVED BY CRYO-EM DBREF1 6R81 A 1 589 UNP A0A164TVX9_BACIU DBREF2 6R81 A A0A164TVX9 1 589 DBREF1 6R81 B 1 589 UNP A0A164TVX9_BACIU DBREF2 6R81 B A0A164TVX9 1 589 SEQADV 6R81 MET A -9 UNP A0A164TVX INITIATING METHIONINE SEQADV 6R81 SER A -8 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 SER A -7 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 SER A -6 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A -5 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A -4 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A -3 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A -2 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A -1 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS A 0 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 ALA A 504 UNP A0A164TVX GLU 504 ENGINEERED MUTATION SEQADV 6R81 MET B -9 UNP A0A164TVX INITIATING METHIONINE SEQADV 6R81 SER B -8 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 SER B -7 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 SER B -6 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B -5 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B -4 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B -3 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B -2 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B -1 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 HIS B 0 UNP A0A164TVX EXPRESSION TAG SEQADV 6R81 ALA B 504 UNP A0A164TVX GLU 504 ENGINEERED MUTATION SEQRES 1 A 599 MET SER SER SER HIS HIS HIS HIS HIS HIS MET PRO THR SEQRES 2 A 599 LYS LYS GLN LYS SER LYS SER LYS LEU LYS PRO PHE PHE SEQRES 3 A 599 ALA LEU VAL ARG ARG THR ASN PRO SER TYR GLY LYS LEU SEQRES 4 A 599 ALA PHE ALA LEU ALA LEU SER VAL VAL THR THR LEU VAL SEQRES 5 A 599 SER LEU LEU ILE PRO LEU LEU THR LYS GLN LEU VAL ASP SEQRES 6 A 599 GLY PHE SER MET SER ASN LEU SER GLY THR GLN ILE GLY SEQRES 7 A 599 LEU ILE ALA LEU VAL PHE PHE VAL GLN ALA GLY LEU SER SEQRES 8 A 599 ALA TYR ALA THR TYR ALA LEU ASN TYR ASN GLY GLN LYS SEQRES 9 A 599 ILE ILE SER GLY LEU ARG GLU LEU LEU TRP LYS LYS LEU SEQRES 10 A 599 ILE LYS LEU PRO VAL SER TYR PHE ASP THR ASN ALA SER SEQRES 11 A 599 GLY GLU THR VAL SER ARG VAL THR ASN ASP THR MET VAL SEQRES 12 A 599 VAL LYS GLU LEU ILE THR THR HIS ILE SER GLY PHE ILE SEQRES 13 A 599 THR GLY ILE ILE SER VAL ILE GLY SER LEU THR ILE LEU SEQRES 14 A 599 PHE ILE MET ASN TRP LYS LEU THR LEU LEU VAL LEU VAL SEQRES 15 A 599 VAL VAL PRO LEU ALA ALA LEU ILE LEU VAL PRO ILE GLY SEQRES 16 A 599 ARG LYS MET PHE SER ILE SER ARG GLU THR GLN ASP GLU SEQRES 17 A 599 THR ALA ARG PHE THR GLY LEU LEU ASN GLN ILE LEU PRO SEQRES 18 A 599 GLU ILE ARG LEU VAL LYS ALA SER ASN ALA GLU ASP VAL SEQRES 19 A 599 GLU TYR GLY ARG GLY LYS MET GLY ILE SER SER LEU PHE SEQRES 20 A 599 LYS LEU GLY VAL ARG GLU ALA LYS VAL GLN SER LEU VAL SEQRES 21 A 599 GLY PRO LEU ILE SER LEU VAL LEU MET ALA ALA LEU VAL SEQRES 22 A 599 ALA VAL ILE GLY TYR GLY GLY MET GLN VAL SER SER GLY SEQRES 23 A 599 GLU LEU THR ALA GLY ALA LEU VAL ALA PHE ILE LEU TYR SEQRES 24 A 599 LEU PHE GLN ILE ILE MET PRO MET GLY GLN ILE THR THR SEQRES 25 A 599 PHE PHE THR GLN LEU GLN LYS SER ILE GLY ALA THR GLU SEQRES 26 A 599 ARG MET ILE GLU ILE LEU ALA GLU GLU GLU GLU ASP THR SEQRES 27 A 599 VAL THR GLY LYS GLN ILE GLU ASN ALA HIS LEU PRO ILE SEQRES 28 A 599 GLN LEU ASP ARG VAL SER PHE GLY TYR LYS PRO ASP GLN SEQRES 29 A 599 LEU ILE LEU LYS GLU VAL SER ALA VAL ILE GLU ALA GLY SEQRES 30 A 599 LYS VAL THR ALA ILE VAL GLY PRO SER GLY GLY GLY LYS SEQRES 31 A 599 THR THR LEU PHE LYS LEU LEU GLU ARG PHE TYR SER PRO SEQRES 32 A 599 THR ALA GLY THR ILE ARG LEU GLY ASP GLU PRO VAL ASP SEQRES 33 A 599 THR TYR SER LEU GLU SER TRP ARG GLU HIS ILE GLY TYR SEQRES 34 A 599 VAL SER GLN GLU SER PRO LEU MET SER GLY THR ILE ARG SEQRES 35 A 599 GLU ASN ILE CYS TYR GLY LEU GLU ARG ASP VAL THR ASP SEQRES 36 A 599 ALA GLU ILE GLU LYS ALA ALA GLU MET ALA TYR ALA LEU SEQRES 37 A 599 ASN PHE ILE LYS GLU LEU PRO ASN GLN PHE ASP THR GLU SEQRES 38 A 599 VAL GLY GLU ARG GLY ILE MET LEU SER GLY GLY GLN ARG SEQRES 39 A 599 GLN ARG ILE ALA ILE ALA ARG ALA LEU LEU ARG ASN PRO SEQRES 40 A 599 SER ILE LEU MET LEU ASP ALA ALA THR SER SER LEU ASP SEQRES 41 A 599 SER GLN SER GLU LYS SER VAL GLN GLN ALA LEU GLU VAL SEQRES 42 A 599 LEU MET GLU GLY ARG THR THR ILE VAL ILE ALA HIS ARG SEQRES 43 A 599 LEU SER THR VAL VAL ASP ALA ASP GLN LEU LEU PHE VAL SEQRES 44 A 599 GLU LYS GLY GLU ILE THR GLY ARG GLY THR HIS HIS GLU SEQRES 45 A 599 LEU MET ALA SER HIS GLY LEU TYR ARG ASP PHE ALA GLU SEQRES 46 A 599 GLN GLN LEU LYS MET ASN ALA ASP LEU GLU ASN LYS ALA SEQRES 47 A 599 GLY SEQRES 1 B 599 MET SER SER SER HIS HIS HIS HIS HIS HIS MET PRO THR SEQRES 2 B 599 LYS LYS GLN LYS SER LYS SER LYS LEU LYS PRO PHE PHE SEQRES 3 B 599 ALA LEU VAL ARG ARG THR ASN PRO SER TYR GLY LYS LEU SEQRES 4 B 599 ALA PHE ALA LEU ALA LEU SER VAL VAL THR THR LEU VAL SEQRES 5 B 599 SER LEU LEU ILE PRO LEU LEU THR LYS GLN LEU VAL ASP SEQRES 6 B 599 GLY PHE SER MET SER ASN LEU SER GLY THR GLN ILE GLY SEQRES 7 B 599 LEU ILE ALA LEU VAL PHE PHE VAL GLN ALA GLY LEU SER SEQRES 8 B 599 ALA TYR ALA THR TYR ALA LEU ASN TYR ASN GLY GLN LYS SEQRES 9 B 599 ILE ILE SER GLY LEU ARG GLU LEU LEU TRP LYS LYS LEU SEQRES 10 B 599 ILE LYS LEU PRO VAL SER TYR PHE ASP THR ASN ALA SER SEQRES 11 B 599 GLY GLU THR VAL SER ARG VAL THR ASN ASP THR MET VAL SEQRES 12 B 599 VAL LYS GLU LEU ILE THR THR HIS ILE SER GLY PHE ILE SEQRES 13 B 599 THR GLY ILE ILE SER VAL ILE GLY SER LEU THR ILE LEU SEQRES 14 B 599 PHE ILE MET ASN TRP LYS LEU THR LEU LEU VAL LEU VAL SEQRES 15 B 599 VAL VAL PRO LEU ALA ALA LEU ILE LEU VAL PRO ILE GLY SEQRES 16 B 599 ARG LYS MET PHE SER ILE SER ARG GLU THR GLN ASP GLU SEQRES 17 B 599 THR ALA ARG PHE THR GLY LEU LEU ASN GLN ILE LEU PRO SEQRES 18 B 599 GLU ILE ARG LEU VAL LYS ALA SER ASN ALA GLU ASP VAL SEQRES 19 B 599 GLU TYR GLY ARG GLY LYS MET GLY ILE SER SER LEU PHE SEQRES 20 B 599 LYS LEU GLY VAL ARG GLU ALA LYS VAL GLN SER LEU VAL SEQRES 21 B 599 GLY PRO LEU ILE SER LEU VAL LEU MET ALA ALA LEU VAL SEQRES 22 B 599 ALA VAL ILE GLY TYR GLY GLY MET GLN VAL SER SER GLY SEQRES 23 B 599 GLU LEU THR ALA GLY ALA LEU VAL ALA PHE ILE LEU TYR SEQRES 24 B 599 LEU PHE GLN ILE ILE MET PRO MET GLY GLN ILE THR THR SEQRES 25 B 599 PHE PHE THR GLN LEU GLN LYS SER ILE GLY ALA THR GLU SEQRES 26 B 599 ARG MET ILE GLU ILE LEU ALA GLU GLU GLU GLU ASP THR SEQRES 27 B 599 VAL THR GLY LYS GLN ILE GLU ASN ALA HIS LEU PRO ILE SEQRES 28 B 599 GLN LEU ASP ARG VAL SER PHE GLY TYR LYS PRO ASP GLN SEQRES 29 B 599 LEU ILE LEU LYS GLU VAL SER ALA VAL ILE GLU ALA GLY SEQRES 30 B 599 LYS VAL THR ALA ILE VAL GLY PRO SER GLY GLY GLY LYS SEQRES 31 B 599 THR THR LEU PHE LYS LEU LEU GLU ARG PHE TYR SER PRO SEQRES 32 B 599 THR ALA GLY THR ILE ARG LEU GLY ASP GLU PRO VAL ASP SEQRES 33 B 599 THR TYR SER LEU GLU SER TRP ARG GLU HIS ILE GLY TYR SEQRES 34 B 599 VAL SER GLN GLU SER PRO LEU MET SER GLY THR ILE ARG SEQRES 35 B 599 GLU ASN ILE CYS TYR GLY LEU GLU ARG ASP VAL THR ASP SEQRES 36 B 599 ALA GLU ILE GLU LYS ALA ALA GLU MET ALA TYR ALA LEU SEQRES 37 B 599 ASN PHE ILE LYS GLU LEU PRO ASN GLN PHE ASP THR GLU SEQRES 38 B 599 VAL GLY GLU ARG GLY ILE MET LEU SER GLY GLY GLN ARG SEQRES 39 B 599 GLN ARG ILE ALA ILE ALA ARG ALA LEU LEU ARG ASN PRO SEQRES 40 B 599 SER ILE LEU MET LEU ASP ALA ALA THR SER SER LEU ASP SEQRES 41 B 599 SER GLN SER GLU LYS SER VAL GLN GLN ALA LEU GLU VAL SEQRES 42 B 599 LEU MET GLU GLY ARG THR THR ILE VAL ILE ALA HIS ARG SEQRES 43 B 599 LEU SER THR VAL VAL ASP ALA ASP GLN LEU LEU PHE VAL SEQRES 44 B 599 GLU LYS GLY GLU ILE THR GLY ARG GLY THR HIS HIS GLU SEQRES 45 B 599 LEU MET ALA SER HIS GLY LEU TYR ARG ASP PHE ALA GLU SEQRES 46 B 599 GLN GLN LEU LYS MET ASN ALA ASP LEU GLU ASN LYS ALA SEQRES 47 B 599 GLY HET ATP A 601 31 HET ATP A 602 31 HET MG A 603 1 HET MG B 601 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 MG 2(MG 2+) HELIX 1 AA1 LEU A 12 ARG A 21 1 10 HELIX 2 AA2 PRO A 24 PHE A 57 1 34 HELIX 3 AA3 SER A 60 GLY A 79 1 20 HELIX 4 AA4 GLY A 79 LYS A 109 1 31 HELIX 5 AA5 PRO A 111 ASP A 116 1 6 HELIX 6 AA6 ALA A 119 VAL A 124 1 6 HELIX 7 AA7 VAL A 124 LEU A 159 1 36 HELIX 8 AA8 LEU A 166 LEU A 171 1 6 HELIX 9 AA9 VAL A 172 GLN A 196 1 25 HELIX 10 AB1 GLU A 198 GLN A 208 1 11 HELIX 11 AB2 ILE A 209 PRO A 211 5 3 HELIX 12 AB3 GLU A 212 LYS A 217 1 6 HELIX 13 AB4 ALA A 221 SER A 234 1 14 HELIX 14 AB5 PHE A 237 LEU A 239 5 3 HELIX 15 AB6 GLY A 240 GLY A 269 1 30 HELIX 16 AB7 ALA A 280 PHE A 291 1 12 HELIX 17 AB8 ILE A 293 ILE A 320 1 28 HELIX 18 AB9 GLY A 379 GLU A 388 1 10 HELIX 19 AC1 ASP A 406 TYR A 408 5 3 HELIX 20 AC2 THR A 430 ASN A 434 5 5 HELIX 21 AC3 GLU A 447 MET A 454 1 8 HELIX 22 AC4 GLY A 481 ASN A 496 1 16 HELIX 23 AC5 ASP A 510 MET A 525 1 16 HELIX 24 AC6 ARG A 536 VAL A 540 5 5 HELIX 25 AC7 THR A 559 HIS A 567 1 9 HELIX 26 AC8 ASP A 572 LYS A 579 1 8 HELIX 27 AC9 ALA A 582 GLY A 589 1 8 HELIX 28 AD1 LEU B 12 ARG B 21 1 10 HELIX 29 AD2 PRO B 24 SER B 58 1 35 HELIX 30 AD3 MET B 59 GLY B 79 1 21 HELIX 31 AD4 GLY B 79 LYS B 109 1 31 HELIX 32 AD5 PRO B 111 ASP B 116 1 6 HELIX 33 AD6 ALA B 119 VAL B 124 1 6 HELIX 34 AD7 VAL B 124 LEU B 159 1 36 HELIX 35 AD8 LEU B 166 LEU B 171 1 6 HELIX 36 AD9 VAL B 172 GLN B 196 1 25 HELIX 37 AE1 GLU B 198 GLN B 208 1 11 HELIX 38 AE2 ILE B 209 PRO B 211 5 3 HELIX 39 AE3 GLU B 212 LYS B 217 1 6 HELIX 40 AE4 ALA B 221 SER B 234 1 14 HELIX 41 AE5 PHE B 237 LEU B 239 5 3 HELIX 42 AE6 GLY B 240 GLY B 269 1 30 HELIX 43 AE7 LEU B 283 PHE B 291 1 9 HELIX 44 AE8 ILE B 293 ILE B 320 1 28 HELIX 45 AE9 LYS B 380 GLU B 388 1 9 HELIX 46 AF1 ASP B 406 TYR B 408 5 3 HELIX 47 AF2 THR B 430 ASN B 434 5 5 HELIX 48 AF3 GLU B 447 MET B 454 1 8 HELIX 49 AF4 GLY B 481 LEU B 493 1 13 HELIX 50 AF5 ASP B 510 MET B 525 1 16 HELIX 51 AF6 ARG B 536 VAL B 540 5 5 HELIX 52 AF7 THR B 559 HIS B 567 1 9 HELIX 53 AF8 ASP B 572 LYS B 579 1 8 HELIX 54 AF9 ASN B 581 GLU B 585 5 5 SHEET 1 AA1 4 VAL A 360 ILE A 364 0 SHEET 2 AA1 4 ILE A 341 SER A 347 -1 N ILE A 341 O ILE A 364 SHEET 3 AA1 4 ALA A 395 LEU A 400 -1 O ARG A 399 N GLN A 342 SHEET 4 AA1 4 GLU A 403 PRO A 404 -1 O GLU A 403 N LEU A 400 SHEET 1 AA2 5 LEU A 500 LEU A 502 0 SHEET 2 AA2 5 THR A 530 ILE A 533 1 O ILE A 533 N LEU A 502 SHEET 3 AA2 5 VAL A 369 VAL A 373 1 N THR A 370 O THR A 530 SHEET 4 AA2 5 GLN A 545 GLU A 550 1 O LEU A 547 N VAL A 373 SHEET 5 AA2 5 GLU A 553 ILE A 554 -1 O GLU A 553 N GLU A 550 SHEET 1 AA3 4 VAL B 360 ILE B 364 0 SHEET 2 AA3 4 ILE B 341 SER B 347 -1 N ILE B 341 O ILE B 364 SHEET 3 AA3 4 ALA B 395 LEU B 400 -1 O ARG B 399 N GLN B 342 SHEET 4 AA3 4 GLU B 403 PRO B 404 -1 O GLU B 403 N LEU B 400 SHEET 1 AA4 5 LEU B 500 LEU B 502 0 SHEET 2 AA4 5 THR B 530 ILE B 533 1 O ILE B 533 N LEU B 502 SHEET 3 AA4 5 VAL B 369 VAL B 373 1 N THR B 370 O THR B 530 SHEET 4 AA4 5 GLN B 545 GLU B 550 1 O LEU B 547 N VAL B 373 SHEET 5 AA4 5 GLU B 553 ILE B 554 -1 O GLU B 553 N GLU B 550 LINK OG1 THR A 381 MG MG A 603 1555 1555 2.13 LINK OE1 GLN A 422 MG MG A 603 1555 1555 2.04 LINK OD1 ASP A 503 MG MG A 603 1555 1555 2.89 LINK OD2 ASP A 503 MG MG A 603 1555 1555 2.16 LINK OE1 GLN B 422 MG MG B 601 1555 1555 2.04 LINK OD1 ASP B 503 MG MG B 601 1555 1555 2.91 LINK OD2 ASP B 503 MG MG B 601 1555 1555 2.15 SITE 1 AC1 14 TYR A 350 ILE A 356 PRO A 375 SER A 376 SITE 2 AC1 14 GLY A 377 GLY A 378 LYS A 380 THR A 381 SITE 3 AC1 14 THR A 382 GLN A 422 MG A 603 MET B 478 SITE 4 AC1 14 SER B 480 GLY B 482 SITE 1 AC2 17 ILE A 477 MET A 478 LEU A 479 SER A 480 SITE 2 AC2 17 GLY A 481 GLY A 482 TYR B 350 ILE B 356 SITE 3 AC2 17 PRO B 375 SER B 376 GLY B 377 GLY B 378 SITE 4 AC2 17 GLY B 379 LYS B 380 THR B 381 THR B 382 SITE 5 AC2 17 GLN B 422 SITE 1 AC3 4 THR A 381 GLN A 422 ASP A 503 ATP A 601 SITE 1 AC4 3 THR B 381 GLN B 422 ASP B 503 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000