HEADER RIBOSOMAL PROTEIN 01-APR-19 6R8D OBSLTE 16-DEC-20 6R8D 7AFQ TITLE SOLUTION STRUCTURE OF RIBOSOME-BINDING FACTOR A (RBFA) UNDER TITLE 2 PHYSIOLOGICAL CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER SP. EC-NT1; SOURCE 3 ORGANISM_TAXID: 2163603; SOURCE 4 GENE: RBFA, DBP23_09200; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSOME ASSEMBLY FACTOR, RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SCHEDLBAUER,B.OCHOA LIZARRALDE,R.CAPUNI,I.ITURRIOZ,P.FUCINI, AUTHOR 2 S.CONNELL REVDAT 2 16-DEC-20 6R8D 1 OBSLTE JRNL REVDAT 1 03-JUN-20 6R8D 0 JRNL AUTH A.SCHEDLBAUER,B.OCHOA LIZARRALDE,R.CAPUNI,I.ITURRIOZ, JRNL AUTH 2 P.FUCINI,S.CONNELL JRNL TITL A CONSERVED RRNA SWITCH IS CENTRAL TO DECODING SITE JRNL TITL 2 MATURATION ON THE SMALL RIBOSOMAL SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101513. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-98% 13C; U-98% 15N] REMARK 210 RBFA, 10 MM HEPES, 6 MM MGCL2, REMARK 210 30 MM NH4CL, 75 UM TCEP, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HN(CO)CA; 3D HN(CA)CO; 3D REMARK 210 HCCH-TOCSY; 3D HNCAHA; 3D HN(CO) REMARK 210 CAHA; 3D CNH NOESY; 3D HNH NOESY; REMARK 210 3D HCH NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 PHE A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 ASN A 101 REMARK 465 SER A 102 REMARK 465 LEU A 103 REMARK 465 VAL A 104 REMARK 465 GLU A 105 REMARK 465 GLY A 106 REMARK 465 MET A 107 REMARK 465 ARG A 108 REMARK 465 MET A 109 REMARK 465 SER A 110 REMARK 465 ASN A 111 REMARK 465 LEU A 112 REMARK 465 VAL A 113 REMARK 465 THR A 114 REMARK 465 SER A 115 REMARK 465 VAL A 116 REMARK 465 VAL A 117 REMARK 465 LYS A 118 REMARK 465 HIS A 119 REMARK 465 ASP A 120 REMARK 465 GLU A 121 REMARK 465 GLU A 122 REMARK 465 ARG A 123 REMARK 465 ARG A 124 REMARK 465 VAL A 125 REMARK 465 ASN A 126 REMARK 465 PRO A 127 REMARK 465 ASP A 128 REMARK 465 ASP A 129 REMARK 465 SER A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 ASP A 133 REMARK 465 ALA A 134 REMARK 465 LEU A 135 REMARK 465 GLU A 136 REMARK 465 VAL A 137 REMARK 465 LEU A 138 REMARK 465 PHE A 139 REMARK 465 GLN A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 ILE A 91 34.75 -97.70 REMARK 500 5 ILE A 91 33.20 -76.22 REMARK 500 6 ILE A 91 40.50 -75.79 REMARK 500 7 ILE A 91 43.79 -96.70 REMARK 500 8 ILE A 91 -2.37 -59.07 REMARK 500 9 ILE A 91 45.03 -89.75 REMARK 500 10 ILE A 91 30.44 -94.53 REMARK 500 11 ILE A 91 26.84 -73.55 REMARK 500 12 MET A 34 -126.21 56.17 REMARK 500 15 MET A 35 72.80 -150.60 REMARK 500 15 ILE A 91 34.02 -78.28 REMARK 500 17 LEU A 47 11.07 58.87 REMARK 500 17 ILE A 91 29.25 -71.43 REMARK 500 19 LEU A 47 15.26 59.17 REMARK 500 20 ILE A 91 21.63 -77.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34385 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF RIBOSOME-BINDING FACTOR A (RBFA) UNDER REMARK 900 PHYSIOLOGICAL CONDITIONS DBREF1 6R8D A 2 133 UNP A0A3D8XK86_9ENTR DBREF2 6R8D A A0A3D8XK86 2 133 SEQADV 6R8D SER A 1 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D ALA A 134 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D LEU A 135 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D GLU A 136 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D VAL A 137 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D LEU A 138 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D PHE A 139 UNP A0A3D8XK8 EXPRESSION TAG SEQADV 6R8D GLN A 140 UNP A0A3D8XK8 EXPRESSION TAG SEQRES 1 A 140 SER ALA LYS GLU PHE GLY ARG PRO GLN ARG VAL ALA GLN SEQRES 2 A 140 GLU MET GLN LYS GLU ILE ALA LEU ILE LEU GLN ARG GLU SEQRES 3 A 140 ILE LYS ASP PRO ARG LEU GLY MET MET THR THR VAL SER SEQRES 4 A 140 GLY VAL GLU MET SER ARG ASP LEU ALA TYR ALA LYS VAL SEQRES 5 A 140 TYR VAL THR PHE LEU ASN ASP LYS ASP GLU ASP ALA VAL SEQRES 6 A 140 LYS ALA GLY ILE LYS ALA LEU GLN GLU ALA SER GLY PHE SEQRES 7 A 140 ILE ARG SER LEU LEU GLY LYS ALA MET ARG LEU ARG ILE SEQRES 8 A 140 VAL PRO GLU LEU THR PHE PHE TYR ASP ASN SER LEU VAL SEQRES 9 A 140 GLU GLY MET ARG MET SER ASN LEU VAL THR SER VAL VAL SEQRES 10 A 140 LYS HIS ASP GLU GLU ARG ARG VAL ASN PRO ASP ASP SER SEQRES 11 A 140 LYS GLU ASP ALA LEU GLU VAL LEU PHE GLN HELIX 1 AA1 PRO A 8 GLU A 26 1 19 HELIX 2 AA2 LYS A 28 GLY A 33 1 6 HELIX 3 AA3 PHE A 56 LYS A 60 5 5 HELIX 4 AA4 ASP A 61 ALA A 75 1 15 HELIX 5 AA5 ALA A 75 ARG A 88 1 14 SHEET 1 AA1 3 THR A 37 MET A 43 0 SHEET 2 AA1 3 TYR A 49 THR A 55 -1 O LYS A 51 N GLU A 42 SHEET 3 AA1 3 GLU A 94 TYR A 99 1 O THR A 96 N VAL A 52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1