data_6R8E # _entry.id 6R8E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.348 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6R8E pdb_00006r8e 10.2210/pdb6r8e/pdb WWPDB D_1292101544 ? ? BMRB 34386 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'SC14 G-hairpin' _pdbx_database_related.db_id 34386 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6R8E _pdbx_database_status.recvd_initial_deposition_date 2019-04-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lenarcic Zivkovic, M.' 1 0000-0001-6501-4145 'Trantirek, L.' 2 0000-0001-5948-4837 'Plavec, J.' 3 0000-0003-1570-8602 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 2317 _citation.page_last 2332 _citation.title 'Insight into formation propensity of pseudocircular DNA G-hairpins.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkab029 _citation.pdbx_database_id_PubMed 33524154 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zivkovic, M.L.' 1 ? primary 'Gajarsky, M.' 2 ? primary 'Bekova, K.' 3 ? primary 'Stadlbauer, P.' 4 ? primary 'Vicherek, L.' 5 ? primary 'Petrova, M.' 6 ? primary 'Fiala, R.' 7 ? primary 'Rosenberg, I.' 8 ? primary 'Sponer, J.' 9 ? primary 'Plavec, J.' 10 ? primary 'Trantirek, L.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') ; _entity.formula_weight 4413.846 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DT)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can GTGTGTGGGTGTGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DT n 1 11 DG n 1 12 DT n 1 13 DG n 1 14 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae' _pdbx_entity_src_syn.organism_common_name ;baker's yeast ; _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6R8E _struct_ref.pdbx_db_accession 6R8E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6R8E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6R8E _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 14 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 2 isotropic 2 2 2 '2D NOESY' 1 isotropic 7 2 2 '2D NOESY' 5 isotropic 6 1 1 '2D NOESY' 4 isotropic 3 2 2 '2D TOCSY' 1 isotropic 4 2 2 '2D DQF-COSY' 2 isotropic 5 1 1 '1D 15N-edited HSQC' 3 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 atm 1 7.0 120 ? ? mM H2O ? pH ? ? K 2 283 atm 1 7.0 120 ? ? mM D2O ? pD ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3'), 90% H2O/10% D2O ; '90% H2O/10% D2O' SC14_H2O solution ? 2 ;0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3'), 100% D2O ; '100% D2O' SC14_D2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 700 ? 5 'AVANCE III' ? Bruker 600 ? 2 'AVANCE III' ? Bruker 850 ? 4 'AVANCE III' ? Bruker 950 ? 3 DD2 ? Agilent 600 ? # _pdbx_nmr_refine.entry_id 6R8E _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 6R8E _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6R8E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' Sparky ? Goddard 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 processing VNMR ? Varian 4 processing TopSpin ? 'Bruker Biospin' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6R8E _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6R8E _struct.title 'SC14 G-hairpin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6R8E _struct_keywords.text 'G-hairpin DNA NMR spectroscopy structure dynamics, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 7 N1 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog5 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog6 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 8 A DG 11 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6R8E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DT 14 14 14 DT DT A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 2770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-03 2 'Structure model' 1 1 2021-08-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') ; 0.6 ? mM / 2 ;DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') ; 0.6 ? mM / # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.38 108.30 2.08 0.30 N 2 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.57 111.50 3.07 0.50 N 3 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.70 108.30 2.40 0.30 N 4 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.23 122.90 -3.67 0.60 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.99 108.30 3.69 0.30 N 6 1 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 116.20 119.90 -3.70 0.60 N 7 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.87 108.30 3.57 0.30 N 8 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.29 122.90 -3.61 0.60 N 9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.75 108.30 3.45 0.30 N 10 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.83 108.30 3.53 0.30 N 11 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.01 108.30 3.71 0.30 N 12 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.62 108.30 2.32 0.30 N 13 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.21 108.30 6.91 0.30 N 14 1 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 115.98 119.90 -3.92 0.60 N 15 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.40 108.30 2.10 0.30 N 16 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.04 122.90 -3.86 0.60 N 17 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.61 108.30 4.31 0.30 N 18 1 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.48 108.30 3.18 0.30 N 19 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.43 108.30 3.13 0.30 N 20 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.20 122.90 -3.70 0.60 N 21 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.66 108.30 2.36 0.30 N 22 2 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.05 122.90 -3.85 0.60 N 23 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.08 108.30 3.78 0.30 N 24 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.62 108.30 3.32 0.30 N 25 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.29 122.90 -3.61 0.60 N 26 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.51 108.30 3.21 0.30 N 27 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.79 108.30 3.49 0.30 N 28 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.29 122.90 -3.61 0.60 N 29 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.02 108.30 2.72 0.30 N 30 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.33 108.30 4.03 0.30 N 31 2 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.25 119.90 -3.65 0.60 N 32 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 114.55 108.30 6.25 0.30 N 33 2 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.20 119.90 -3.70 0.60 N 34 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.72 108.30 3.42 0.30 N 35 2 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.14 122.90 -3.76 0.60 N 36 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.13 108.30 4.83 0.30 N 37 2 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.63 108.30 3.33 0.30 N 38 2 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.24 108.30 2.94 0.30 N 39 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.25 122.90 -3.65 0.60 N 40 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.43 108.30 2.13 0.30 N 41 3 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.07 122.90 -3.83 0.60 N 42 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.76 108.30 3.46 0.30 N 43 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.78 108.30 3.48 0.30 N 44 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.16 122.90 -3.74 0.60 N 45 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.44 108.30 3.14 0.30 N 46 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.76 108.30 3.46 0.30 N 47 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.14 108.30 2.84 0.30 N 48 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.45 108.30 7.15 0.30 N 49 3 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.06 119.90 -3.84 0.60 N 50 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.73 108.30 2.43 0.30 N 51 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.26 122.90 -3.64 0.60 N 52 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.11 108.30 4.81 0.30 N 53 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.26 122.90 -3.64 0.60 N 54 3 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.49 108.30 3.19 0.30 N 55 3 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.01 108.30 2.71 0.30 N 56 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.74 108.30 2.44 0.30 N 57 4 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.57 111.50 3.07 0.50 N 58 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.15 108.30 2.85 0.30 N 59 4 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.24 122.90 -3.66 0.60 N 60 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.24 108.30 3.94 0.30 N 61 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.75 108.30 3.45 0.30 N 62 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.02 122.90 -3.88 0.60 N 63 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.77 108.30 3.47 0.30 N 64 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.77 108.30 3.47 0.30 N 65 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.79 108.30 3.49 0.30 N 66 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.20 108.30 2.90 0.30 N 67 4 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.24 119.90 -3.66 0.60 N 68 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 114.64 108.30 6.34 0.30 N 69 4 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.20 119.90 -3.70 0.60 N 70 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.15 108.30 3.85 0.30 N 71 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.14 108.30 3.84 0.30 N 72 4 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 118.68 122.30 -3.62 0.60 N 73 4 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 112.41 108.30 4.11 0.30 N 74 4 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.40 108.30 3.10 0.30 N 75 4 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.21 122.90 -3.69 0.60 N 76 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.42 108.30 2.12 0.30 N 77 5 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 118.94 122.90 -3.96 0.60 N 78 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.55 108.30 3.25 0.30 N 79 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.09 108.30 3.79 0.30 N 80 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.94 122.90 -3.96 0.60 N 81 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.87 108.30 3.57 0.30 N 82 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.84 108.30 3.54 0.30 N 83 5 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.30 122.90 -3.60 0.60 N 84 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.76 108.30 3.46 0.30 N 85 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.03 108.30 2.73 0.30 N 86 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.43 108.30 7.13 0.30 N 87 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.01 108.30 3.71 0.30 N 88 5 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.12 122.90 -3.78 0.60 N 89 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.47 108.30 4.17 0.30 N 90 5 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.41 108.30 3.11 0.30 N 91 5 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.29 108.30 2.99 0.30 N 92 5 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.08 122.90 -3.82 0.60 N 93 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.53 108.30 2.23 0.30 N 94 6 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.16 122.90 -3.74 0.60 N 95 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.09 108.30 3.79 0.30 N 96 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.98 108.30 3.68 0.30 N 97 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.07 122.90 -3.83 0.60 N 98 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.77 108.30 3.47 0.30 N 99 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.46 108.30 3.16 0.30 N 100 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.97 108.30 3.67 0.30 N 101 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.78 108.30 2.48 0.30 N 102 6 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.29 119.90 -3.61 0.60 N 103 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.55 108.30 7.25 0.30 N 104 6 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.01 119.90 -3.89 0.60 N 105 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.04 108.30 3.74 0.30 N 106 6 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.05 122.90 -3.85 0.60 N 107 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.74 108.30 4.44 0.30 N 108 6 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 118.62 122.30 -3.68 0.60 N 109 6 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.04 108.30 2.74 0.30 N 110 6 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.24 108.30 1.94 0.30 N 111 6 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.15 122.90 -3.75 0.60 N 112 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.25 108.30 2.95 0.30 N 113 7 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.60 111.50 3.10 0.50 N 114 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.84 108.30 2.54 0.30 N 115 7 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.30 122.90 -3.60 0.60 N 116 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.28 108.30 3.98 0.30 N 117 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.87 108.30 3.57 0.30 N 118 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.30 122.90 -3.60 0.60 N 119 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.88 108.30 3.58 0.30 N 120 7 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.55 108.30 3.25 0.30 N 121 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.50 108.30 3.20 0.30 N 122 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.97 108.30 2.67 0.30 N 123 7 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.01 119.90 -3.89 0.60 N 124 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.29 108.30 6.99 0.30 N 125 7 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.02 119.90 -3.88 0.60 N 126 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.30 108.30 2.00 0.30 N 127 7 N3 A DT 10 ? ? C2 A DT 10 ? ? O2 A DT 10 ? ? 118.56 122.30 -3.74 0.60 N 128 7 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.18 122.90 -3.72 0.60 N 129 7 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.08 122.90 -3.82 0.60 N 130 7 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 114.06 108.30 5.76 0.30 N 131 7 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 112.13 108.30 3.83 0.30 N 132 7 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.12 122.90 -3.78 0.60 N 133 8 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.68 111.50 3.18 0.50 N 134 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.51 108.30 3.21 0.30 N 135 8 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.25 122.90 -3.65 0.60 N 136 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.01 108.30 3.71 0.30 N 137 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.90 108.30 3.60 0.30 N 138 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.20 122.90 -3.70 0.60 N 139 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.03 108.30 3.73 0.30 N 140 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.50 108.30 3.20 0.30 N 141 8 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.13 122.90 -3.77 0.60 N 142 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.65 108.30 3.35 0.30 N 143 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.11 108.30 2.81 0.30 N 144 8 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.07 119.90 -3.83 0.60 N 145 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.33 108.30 7.03 0.30 N 146 8 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.15 119.90 -3.75 0.60 N 147 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.97 108.30 3.67 0.30 N 148 8 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.08 122.90 -3.82 0.60 N 149 8 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.29 108.30 2.99 0.30 N 150 8 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.89 122.90 -4.01 0.60 N 151 8 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.50 108.30 3.20 0.30 N 152 8 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.95 108.30 2.65 0.30 N 153 9 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.69 111.50 3.19 0.50 N 154 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.19 108.30 2.89 0.30 N 155 9 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.27 122.90 -3.63 0.60 N 156 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.14 108.30 3.84 0.30 N 157 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.78 108.30 3.48 0.30 N 158 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.03 122.90 -3.87 0.60 N 159 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.73 108.30 3.43 0.30 N 160 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.83 108.30 3.53 0.30 N 161 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.04 108.30 3.74 0.30 N 162 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.57 108.30 2.27 0.30 N 163 9 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 116.27 119.90 -3.63 0.60 N 164 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.22 108.30 6.92 0.30 N 165 9 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 115.92 119.90 -3.98 0.60 N 166 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.11 108.30 3.81 0.30 N 167 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.17 108.30 4.87 0.30 N 168 9 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.88 122.90 -4.02 0.60 N 169 9 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.88 108.30 2.58 0.30 N 170 9 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.77 108.30 2.47 0.30 N 171 9 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.27 122.90 -3.63 0.60 N 172 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.45 108.30 2.15 0.30 N 173 10 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.52 111.50 3.02 0.50 N 174 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.96 108.30 2.66 0.30 N 175 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.14 108.30 3.84 0.30 N 176 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.88 108.30 3.58 0.30 N 177 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.11 122.90 -3.79 0.60 N 178 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.06 108.30 3.76 0.30 N 179 10 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.40 108.30 3.10 0.30 N 180 10 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.24 122.90 -3.66 0.60 N 181 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.64 108.30 3.34 0.30 N 182 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.75 108.30 2.45 0.30 N 183 10 N1 A DG 8 ? ? C6 A DG 8 ? ? O6 A DG 8 ? ? 115.98 119.90 -3.92 0.60 N 184 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.35 108.30 7.05 0.30 N 185 10 N1 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 116.09 119.90 -3.81 0.60 N 186 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.35 108.30 4.05 0.30 N 187 10 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.19 122.90 -3.71 0.60 N 188 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.74 108.30 4.44 0.30 N 189 10 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.25 122.90 -3.65 0.60 N 190 10 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.20 108.30 1.90 0.30 N 191 10 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 111.28 108.30 2.98 0.30 N 192 10 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.20 122.90 -3.70 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 9 ? ? 0.059 'SIDE CHAIN' 2 2 DG A 9 ? ? 0.073 'SIDE CHAIN' 3 2 DG A 11 ? ? 0.104 'SIDE CHAIN' 4 3 DG A 9 ? ? 0.058 'SIDE CHAIN' 5 3 DT A 10 ? ? 0.083 'SIDE CHAIN' 6 3 DG A 11 ? ? 0.093 'SIDE CHAIN' 7 4 DG A 9 ? ? 0.070 'SIDE CHAIN' 8 4 DG A 11 ? ? 0.094 'SIDE CHAIN' 9 5 DG A 1 ? ? 0.053 'SIDE CHAIN' 10 5 DG A 9 ? ? 0.073 'SIDE CHAIN' 11 5 DG A 11 ? ? 0.082 'SIDE CHAIN' 12 6 DG A 1 ? ? 0.056 'SIDE CHAIN' 13 6 DG A 9 ? ? 0.067 'SIDE CHAIN' 14 7 DG A 9 ? ? 0.075 'SIDE CHAIN' 15 8 DG A 9 ? ? 0.089 'SIDE CHAIN' 16 8 DT A 12 ? ? 0.072 'SIDE CHAIN' 17 9 DG A 9 ? ? 0.068 'SIDE CHAIN' 18 9 DG A 11 ? ? 0.074 'SIDE CHAIN' 19 9 DT A 12 ? ? 0.073 'SIDE CHAIN' 20 10 DG A 9 ? ? 0.077 'SIDE CHAIN' 21 10 DT A 12 ? ? 0.062 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 6R8E _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 7 1_555 1.594 1.336 -0.072 1.630 -0.877 -159.513 1 A_DG3:DG7_A A 3 ? A 7 ? 3 2 1 A DG 1 1_555 A DG 9 1_555 -1.592 -0.997 -0.383 -8.616 5.726 154.691 2 A_DG1:DG9_A A 1 ? A 9 ? 3 2 1 A DG 11 1_555 A DG 8 1_555 0.023 -1.693 2.061 23.928 -19.612 119.219 3 A_DG11:DG8_A A 11 ? A 8 ? 3 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 7 1_555 A DG 1 1_555 A DG 9 1_555 -2.842 -1.720 -1.126 40.898 -169.336 105.440 -1.092 1.366 -0.288 -85.243 -20.588 176.491 1 AA_DG3DG1:DG9DG7_AA A 3 ? A 7 ? A 1 ? A 9 ? 1 A DG 1 1_555 A DG 9 1_555 A DG 11 1_555 A DG 8 1_555 1.958 -1.406 4.157 10.845 -15.601 -36.659 3.888 4.099 2.708 23.005 15.993 -41.140 2 AA_DG1DG11:DG8DG9_AA A 1 ? A 9 ? A 11 ? A 8 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Slovenian Research Agency' Slovenia P1-242 1 'Slovenian Research Agency' Slovenia J1-6733 2 'Ministry of Education (MoE, Czech Republic)' 'Czech Republic' MSCAfellow2@MUNI 3 'Czech Science Foundation' 'Czech Republic' GA17-12075S 4 'Czech Science Foundation' 'Czech Republic' 19-26041X 5 'European Regional Development Fund' 'Czech Republic' CZ.02.1.01/0.0/0.0/15_003/0000477 6 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #