HEADER HYDROLASE 03-APR-19 6R9J TITLE STRUCTURE OF SACCHAROMYCES CEREVISIAE APO PAN2 PSEUDOUBIQUITIN TITLE 2 HYDROLASE-RNA EXONUCLEASE (UCH-EXO) MODULE IN COMPLEX WITH A7 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAN2-PAN3 DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAB1P-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE,POLY(A)- COMPND 5 NUCLEASE DEADENYLATION COMPLEX SUBUNIT 2,PAN DEADENYLATION COMPLEX COMPND 6 SUBUNIT 2; COMPND 7 EC: 3.1.13.4; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: A7 RNA; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: PAN2, YGL094C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACEBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN ALL EUKARYOTIC SOURCE 17 ORGANISMS. KEYWDS DEDD RNASE, DEADENYLASE, PSEUDOUBIQUITIN HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.T.L.TANG,J.A.W.STOWELL,C.H.HILL,L.A.PASSMORE REVDAT 5 24-JAN-24 6R9J 1 REMARK REVDAT 4 21-AUG-19 6R9J 1 REMARK REVDAT 3 19-JUN-19 6R9J 1 JRNL REVDAT 2 29-MAY-19 6R9J 1 JRNL REVDAT 1 22-MAY-19 6R9J 0 JRNL AUTH T.T.L.TANG,J.A.W.STOWELL,C.H.HILL,L.A.PASSMORE JRNL TITL THE INTRINSIC STRUCTURE OF POLY(A) RNA DETERMINES THE JRNL TITL 2 SPECIFICITY OF PAN2 AND CAF1 DEADENYLASES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 433 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31110294 JRNL DOI 10.1038/S41594-019-0227-9 REMARK 2 REMARK 2 RESOLUTION. 3.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.9447 - 6.6498 0.99 2572 146 0.2229 0.2955 REMARK 3 2 6.6498 - 5.2786 1.00 2442 147 0.2865 0.2985 REMARK 3 3 5.2786 - 4.6115 1.00 2446 133 0.2175 0.2693 REMARK 3 4 4.6115 - 4.1899 0.99 2435 117 0.2263 0.2663 REMARK 3 5 4.1899 - 3.8896 0.99 2416 125 0.2486 0.2911 REMARK 3 6 3.8896 - 3.6603 0.99 2414 130 0.2737 0.3151 REMARK 3 7 3.6603 - 3.4770 0.99 2370 160 0.3115 0.3421 REMARK 3 8 3.4770 - 3.3257 0.96 2308 121 0.3844 0.4569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 151.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 462 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A):-160.9367 169.7811 302.4845 REMARK 3 T TENSOR REMARK 3 T11: 0.9116 T22: 1.1516 REMARK 3 T33: 0.9299 T12: 0.1486 REMARK 3 T13: 0.0029 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.1839 L22: 8.7489 REMARK 3 L33: 7.0094 L12: -1.4974 REMARK 3 L13: -0.9057 L23: 4.1219 REMARK 3 S TENSOR REMARK 3 S11: -0.4283 S12: -0.3973 S13: -0.2732 REMARK 3 S21: 0.9784 S22: 0.3539 S23: 0.5561 REMARK 3 S31: 1.1515 S32: 0.3129 S33: 0.0607 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 545 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A):-156.3617 174.1367 282.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.7259 T22: 1.2425 REMARK 3 T33: 0.7538 T12: -0.0637 REMARK 3 T13: 0.0365 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.6496 L22: 3.0980 REMARK 3 L33: 5.1958 L12: 0.2441 REMARK 3 L13: -0.4815 L23: -1.5958 REMARK 3 S TENSOR REMARK 3 S11: -0.1707 S12: 0.3232 S13: 0.2352 REMARK 3 S21: -0.5923 S22: -0.1023 S23: -0.1230 REMARK 3 S31: 0.0666 S32: 0.1079 S33: 0.3075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 759 THROUGH 1110 ) REMARK 3 ORIGIN FOR THE GROUP (A):-156.4109 155.8700 305.4181 REMARK 3 T TENSOR REMARK 3 T11: 0.9591 T22: 1.0990 REMARK 3 T33: 0.8813 T12: 0.0150 REMARK 3 T13: -0.0220 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 1.9227 L22: 3.7413 REMARK 3 L33: 3.9430 L12: -0.5516 REMARK 3 L13: 0.5813 L23: -1.8066 REMARK 3 S TENSOR REMARK 3 S11: 0.2323 S12: -0.1528 S13: -0.2114 REMARK 3 S21: 0.2124 S22: -0.3391 S23: -0.1014 REMARK 3 S31: 0.3564 S32: -0.1571 S33: 0.1039 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A):-145.3783 156.1330 322.8324 REMARK 3 T TENSOR REMARK 3 T11: 3.1756 T22: 2.8214 REMARK 3 T33: 2.0483 T12: -1.3147 REMARK 3 T13: -0.4486 T23: 0.1575 REMARK 3 L TENSOR REMARK 3 L11: 5.8129 L22: 6.6183 REMARK 3 L33: 5.0528 L12: -6.1990 REMARK 3 L13: -5.1998 L23: 5.6034 REMARK 3 S TENSOR REMARK 3 S11: 0.4836 S12: 0.7864 S13: 2.3768 REMARK 3 S21: 6.5803 S22: -0.4376 S23: -3.3602 REMARK 3 S31: 0.9227 S32: -0.2264 S33: -0.1580 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 1.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20507 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.326 REMARK 200 RESOLUTION RANGE LOW (A) : 71.928 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8 REMARK 200 STARTING MODEL: 4CZW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.20450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 128.91650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.20450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.91650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.20450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.91650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.20450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 128.91650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 LEU A 453 REMARK 465 GLU A 454 REMARK 465 VAL A 455 REMARK 465 LEU A 456 REMARK 465 PHE A 457 REMARK 465 GLN A 458 REMARK 465 GLY A 459 REMARK 465 PRO A 460 REMARK 465 THR A 461 REMARK 465 GLY A 487 REMARK 465 ARG A 488 REMARK 465 PHE A 489 REMARK 465 GLY A 490 REMARK 465 ARG A 581 REMARK 465 GLN A 582 REMARK 465 LEU A 583 REMARK 465 GLU A 584 REMARK 465 ASN A 585 REMARK 465 GLY A 586 REMARK 465 GLU A 587 REMARK 465 ARG A 602 REMARK 465 GLU A 603 REMARK 465 SER A 604 REMARK 465 ILE A 605 REMARK 465 GLU A 606 REMARK 465 ASP A 607 REMARK 465 PHE A 608 REMARK 465 ASN A 609 REMARK 465 SER A 610 REMARK 465 SER A 611 REMARK 465 ASN A 687 REMARK 465 LYS A 688 REMARK 465 LYS A 689 REMARK 465 SER A 690 REMARK 465 ASN A 691 REMARK 465 GLY A 692 REMARK 465 ILE A 712 REMARK 465 CYS A 713 REMARK 465 PRO A 714 REMARK 465 THR A 715 REMARK 465 CYS A 716 REMARK 465 GLY A 717 REMARK 465 LYS A 718 REMARK 465 THR A 719 REMARK 465 PHE A 880 REMARK 465 ALA A 881 REMARK 465 ASN A 882 REMARK 465 GLY A 883 REMARK 465 ILE A 884 REMARK 465 ARG A 885 REMARK 465 ASP A 886 REMARK 465 THR A 887 REMARK 465 ILE A 923 REMARK 465 ASP A 924 REMARK 465 HIS A 925 REMARK 465 GLN A 926 REMARK 465 GLY A 927 REMARK 465 ILE A 928 REMARK 465 ARG A 929 REMARK 465 SER A 930 REMARK 465 ILE A 931 REMARK 465 ILE A 932 REMARK 465 ARG A 933 REMARK 465 GLU A 1111 REMARK 465 THR A 1112 REMARK 465 SER A 1113 REMARK 465 LYS A 1114 REMARK 465 GLY A 1115 REMARK 465 A B 8 REMARK 465 A B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LEU A 484 CG CD1 CD2 REMARK 470 ASP A 512 CG OD1 OD2 REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 LYS A 563 CG CD CE NZ REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 LYS A 580 CG CD CE NZ REMARK 470 GLU A 590 CG CD OE1 OE2 REMARK 470 HIS A 591 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 GLU A 594 CG CD OE1 OE2 REMARK 470 TYR A 595 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 599 CG CD1 CD2 REMARK 470 ILE A 601 CG1 CG2 CD1 REMARK 470 GLU A 612 CG CD OE1 OE2 REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 ARG A 616 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 632 CG CD CE NZ REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 GLU A 651 CG CD OE1 OE2 REMARK 470 GLU A 657 CG CD OE1 OE2 REMARK 470 ASP A 661 CG OD1 OD2 REMARK 470 ASN A 679 CG OD1 ND2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 ILE A 683 CG1 CG2 CD1 REMARK 470 LYS A 684 CG CD CE NZ REMARK 470 LEU A 686 CG CD1 CD2 REMARK 470 LYS A 704 CG CD CE NZ REMARK 470 GLN A 708 CG CD OE1 NE2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 ASN A 710 CG OD1 ND2 REMARK 470 SER A 711 OG REMARK 470 GLU A 720 CG CD OE1 OE2 REMARK 470 GLU A 725 CG CD OE1 OE2 REMARK 470 LYS A 729 CG CD CE NZ REMARK 470 GLU A 745 CG CD OE1 OE2 REMARK 470 LYS A 753 CG CD CE NZ REMARK 470 ILE A 765 CG1 CG2 CD1 REMARK 470 LYS A 766 CG CD CE NZ REMARK 470 LYS A 768 CG CD CE NZ REMARK 470 ARG A 772 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 777 CG CD OE1 OE2 REMARK 470 LYS A 779 CG CD CE NZ REMARK 470 HIS A 783 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 786 CG CD CE NZ REMARK 470 ASN A 800 CG OD1 ND2 REMARK 470 GLU A 802 CG CD OE1 OE2 REMARK 470 ASN A 813 CG OD1 ND2 REMARK 470 LYS A 815 CG CD CE NZ REMARK 470 GLU A 816 CG CD OE1 OE2 REMARK 470 LYS A 820 CG CD CE NZ REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 GLU A 856 CG CD OE1 OE2 REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 ASP A 866 CG OD1 OD2 REMARK 470 TYR A 879 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 889 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 890 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 891 CG CD OE1 OE2 REMARK 470 LYS A 893 CG CD CE NZ REMARK 470 LEU A 895 CG CD1 CD2 REMARK 470 LYS A 902 CG CD CE NZ REMARK 470 GLU A 919 CG CD OE1 OE2 REMARK 470 LEU A 920 CG CD1 CD2 REMARK 470 CYS A 921 SG REMARK 470 GLU A 922 CG CD OE1 OE2 REMARK 470 ARG A 936 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 949 CG CD OE1 OE2 REMARK 470 GLU A 951 CG CD OE1 OE2 REMARK 470 HIS A 967 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 974 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 979 CG CD1 CD2 REMARK 470 ASP A 984 CG OD1 OD2 REMARK 470 GLU A 986 CG CD OE1 OE2 REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 LYS A 990 CG CD CE NZ REMARK 470 ARG A 991 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 994 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1022 CG CD CE NZ REMARK 470 ARG A1030 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1033 CG1 CG2 CD1 REMARK 470 LEU A1041 CG CD1 CD2 REMARK 470 LYS A1044 CG CD CE NZ REMARK 470 LEU A1047 CG CD1 CD2 REMARK 470 ARG A1050 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1060 CG OD1 ND2 REMARK 470 GLU A1063 CG CD OE1 OE2 REMARK 470 LYS A1080 CG CD CE NZ REMARK 470 LYS A1086 CG CD CE NZ REMARK 470 GLU A1087 CG CD OE1 OE2 REMARK 470 LYS A1088 CG CD CE NZ REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 LYS A1093 CG CD CE NZ REMARK 470 LEU A1095 CG CD1 CD2 REMARK 470 TYR A1099 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1100 CG CD OE1 OE2 REMARK 470 GLU A1101 CG CD OE1 OE2 REMARK 470 HIS A1105 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A1106 CG OD1 ND2 REMARK 470 LYS A1108 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 492 -165.95 -79.34 REMARK 500 HIS A 640 127.59 -38.36 REMARK 500 ASN A 813 73.92 53.74 REMARK 500 ASN A 817 14.54 59.54 REMARK 500 PHE A 876 74.22 -100.74 REMARK 500 PRO A 980 54.02 -68.17 REMARK 500 ASN A1025 60.65 62.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R9I RELATED DB: PDB REMARK 900 APO STRUCTURE OF PAN2UCH-EXO DBREF 6R9J A 461 1115 UNP P53010 PAN2_YEAST 461 1115 DBREF 6R9J B 3 9 PDB 6R9J 6R9J 3 9 SEQADV 6R9J MET A 444 UNP P53010 INITIATING METHIONINE SEQADV 6R9J HIS A 445 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 446 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 447 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 448 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 449 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 450 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 451 UNP P53010 EXPRESSION TAG SEQADV 6R9J HIS A 452 UNP P53010 EXPRESSION TAG SEQADV 6R9J LEU A 453 UNP P53010 EXPRESSION TAG SEQADV 6R9J GLU A 454 UNP P53010 EXPRESSION TAG SEQADV 6R9J VAL A 455 UNP P53010 EXPRESSION TAG SEQADV 6R9J LEU A 456 UNP P53010 EXPRESSION TAG SEQADV 6R9J PHE A 457 UNP P53010 EXPRESSION TAG SEQADV 6R9J GLN A 458 UNP P53010 EXPRESSION TAG SEQADV 6R9J GLY A 459 UNP P53010 EXPRESSION TAG SEQADV 6R9J PRO A 460 UNP P53010 EXPRESSION TAG SEQADV 6R9J ALA A 912 UNP P53010 GLU 912 ENGINEERED MUTATION SEQRES 1 A 672 MET HIS HIS HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU SEQRES 2 A 672 PHE GLN GLY PRO THR SER ASP ILE GLN THR TYR THR SER SEQRES 3 A 672 ILE ASN LYS TYR GLU VAL PRO PRO ALA TYR SER ARG LEU SEQRES 4 A 672 PRO LEU THR SER GLY ARG PHE GLY THR ASP ASN PHE ASP SEQRES 5 A 672 PHE THR PRO PHE ASN ASN THR GLU TYR SER GLY LEU ASP SEQRES 6 A 672 PRO ASP VAL ASP ASN HIS TYR THR ASN ALA ILE ILE GLN SEQRES 7 A 672 LEU TYR ARG PHE ILE PRO GLU MET PHE ASN PHE VAL VAL SEQRES 8 A 672 GLY CYS LEU LYS ASP GLU ASN PHE GLU THR THR LEU LEU SEQRES 9 A 672 THR ASP LEU GLY TYR LEU PHE ASP MET MET GLU ARG SER SEQRES 10 A 672 HIS GLY LYS ILE CYS SER SER SER ASN PHE GLN ALA SER SEQRES 11 A 672 LEU LYS SER LEU THR ASP LYS ARG GLN LEU GLU ASN GLY SEQRES 12 A 672 GLU PRO GLN GLU HIS LEU GLU GLU TYR LEU GLU SER LEU SEQRES 13 A 672 CYS ILE ARG GLU SER ILE GLU ASP PHE ASN SER SER GLU SEQRES 14 A 672 SER ILE LYS ARG ASN MET PRO GLN LYS PHE ASN ARG PHE SEQRES 15 A 672 LEU LEU SER GLN LEU ILE LYS GLU GLU ALA GLN THR VAL SEQRES 16 A 672 ASN HIS ASN ILE THR LEU ASN GLN CYS PHE GLY LEU GLU SEQRES 17 A 672 THR GLU ILE ARG THR GLU CYS SER CYS ASP HIS TYR ASP SEQRES 18 A 672 THR THR VAL LYS LEU LEU PRO SER LEU SER ILE SER GLY SEQRES 19 A 672 ILE ASN LYS THR VAL ILE LYS GLN LEU ASN LYS LYS SER SEQRES 20 A 672 ASN GLY GLN ASN ILE LEU PRO TYR ILE GLU TYR ALA MET SEQRES 21 A 672 LYS ASN VAL THR GLN LYS ASN SER ILE CYS PRO THR CYS SEQRES 22 A 672 GLY LYS THR GLU THR ILE THR GLN GLU CYS THR VAL LYS SEQRES 23 A 672 ASN LEU PRO SER VAL LEU SER LEU GLU LEU SER LEU LEU SEQRES 24 A 672 ASP THR GLU PHE SER ASN ILE ARG SER SER LYS ASN TRP SEQRES 25 A 672 LEU THR SER GLU PHE TYR GLY SER ILE ILE LYS ASN LYS SEQRES 26 A 672 ALA VAL LEU ARG SER THR ALA SER GLU LEU LYS GLY THR SEQRES 27 A 672 SER HIS ILE PHE LYS TYR GLU LEU ASN GLY TYR VAL ALA SEQRES 28 A 672 LYS ILE THR ASP ASN ASN ASN GLU THR ARG LEU VAL THR SEQRES 29 A 672 TYR VAL LYS LYS TYR ASN PRO LYS GLU ASN CYS PHE LYS SEQRES 30 A 672 TRP LEU MET PHE ASN ASP TYR LEU VAL VAL GLU ILE THR SEQRES 31 A 672 GLU GLU GLU ALA LEU LYS MET THR TYR PRO TRP LYS THR SEQRES 32 A 672 PRO GLU ILE ILE ILE TYR CYS ASP ALA GLU GLU LEU ARG SEQRES 33 A 672 LYS PRO PHE PHE SER VAL ASP THR TYR SER ILE ASN TYR SEQRES 34 A 672 ASP ILE LEU PHE ARG ASP TYR PHE ALA ASN GLY ILE ARG SEQRES 35 A 672 ASP THR ALA ARG ARG GLU TYR LYS LEU LEU THR HIS ASP SEQRES 36 A 672 GLU ALA PRO LYS SER GLY THR LEU VAL ALA ILE ASP ALA SEQRES 37 A 672 ALA PHE VAL SER LEU GLN SER GLU LEU CYS GLU ILE ASP SEQRES 38 A 672 HIS GLN GLY ILE ARG SER ILE ILE ARG PRO LYS ARG THR SEQRES 39 A 672 ALA LEU ALA ARG ILE SER ILE ILE ARG GLY GLU GLU GLY SEQRES 40 A 672 GLU LEU TYR GLY VAL PRO PHE VAL ASP ASP TYR VAL VAL SEQRES 41 A 672 ASN THR ASN HIS ILE GLU ASP TYR LEU THR ARG TYR SER SEQRES 42 A 672 GLY ILE LEU PRO GLY ASP LEU ASP PRO GLU LYS SER THR SEQRES 43 A 672 LYS ARG LEU VAL ARG ARG ASN VAL VAL TYR ARG LYS VAL SEQRES 44 A 672 TRP LEU LEU MET GLN LEU GLY CYS VAL PHE VAL GLY HIS SEQRES 45 A 672 GLY LEU ASN ASN ASP PHE LYS HIS ILE ASN ILE ASN VAL SEQRES 46 A 672 PRO ARG ASN GLN ILE ARG ASP THR ALA ILE TYR PHE LEU SEQRES 47 A 672 GLN GLY LYS ARG TYR LEU SER LEU ARG TYR LEU ALA TYR SEQRES 48 A 672 VAL LEU LEU GLY MET ASN ILE GLN GLU GLY ASN HIS ASP SEQRES 49 A 672 SER ILE GLU ASP ALA HIS THR ALA LEU ILE LEU TYR LYS SEQRES 50 A 672 LYS TYR LEU HIS LEU LYS GLU LYS ALA ILE PHE GLU LYS SEQRES 51 A 672 VAL LEU ASN SER VAL TYR GLU GLU GLY ARG ALA HIS ASN SEQRES 52 A 672 PHE LYS VAL PRO GLU THR SER LYS GLY SEQRES 1 B 7 A A A A A A A HELIX 1 AA1 PRO A 476 SER A 480 5 5 HELIX 2 AA2 TYR A 515 PHE A 525 1 11 HELIX 3 AA3 ILE A 526 VAL A 534 1 9 HELIX 4 AA4 GLY A 535 LYS A 538 5 4 HELIX 5 AA5 THR A 544 HIS A 561 1 18 HELIX 6 AA6 SER A 567 ASP A 579 1 13 HELIX 7 AA7 GLN A 589 SER A 598 1 10 HELIX 8 AA8 ASN A 617 ALA A 635 1 19 HELIX 9 AA9 ILE A 642 GLY A 649 1 8 HELIX 10 AB1 ILE A 695 MET A 703 1 9 HELIX 11 AB2 LEU A 742 ILE A 749 1 8 HELIX 12 AB3 THR A 774 LEU A 778 5 5 HELIX 13 AB4 THR A 833 LEU A 838 1 6 HELIX 14 AB5 ALA A 855 ARG A 859 1 5 HELIX 15 AB6 SER A 864 TYR A 868 5 5 HELIX 16 AB7 THR A 896 ALA A 900 5 5 HELIX 17 AB8 ARG A 994 GLY A 1009 1 16 HELIX 18 AB9 GLY A 1016 ASN A 1025 1 10 HELIX 19 AC1 PRO A 1029 ASN A 1031 5 3 HELIX 20 AC2 THR A 1036 PHE A 1040 1 5 HELIX 21 AC3 SER A 1048 LEU A 1056 1 9 HELIX 22 AC4 ASP A 1067 LYS A 1088 1 22 HELIX 23 AC5 ILE A 1090 ASN A 1106 1 17 SHEET 1 AA1 4 HIS A 662 LEU A 670 0 SHEET 2 AA1 4 LEU A 650 SER A 659 -1 N THR A 656 O ASP A 664 SHEET 3 AA1 4 THR A 723 VAL A 728 -1 O THR A 727 N GLU A 653 SHEET 4 AA1 4 LYS A 704 THR A 707 -1 N THR A 707 O GLN A 724 SHEET 1 AA2 6 LEU A 673 ILE A 675 0 SHEET 2 AA2 6 VAL A 734 LEU A 739 1 O SER A 736 N LEU A 673 SHEET 3 AA2 6 LYS A 845 ASP A 854 -1 O TYR A 852 N LEU A 735 SHEET 4 AA2 6 PHE A 785 THR A 797 -1 N LYS A 795 O THR A 846 SHEET 5 AA2 6 GLU A 759 ILE A 764 -1 N PHE A 760 O TYR A 787 SHEET 6 AA2 6 ALA A 769 ARG A 772 -1 O ARG A 772 N TYR A 761 SHEET 1 AA3 7 LEU A 673 ILE A 675 0 SHEET 2 AA3 7 VAL A 734 LEU A 739 1 O SER A 736 N LEU A 673 SHEET 3 AA3 7 LYS A 845 ASP A 854 -1 O TYR A 852 N LEU A 735 SHEET 4 AA3 7 PHE A 785 THR A 797 -1 N LYS A 795 O THR A 846 SHEET 5 AA3 7 THR A 803 LYS A 811 -1 O TYR A 808 N TYR A 792 SHEET 6 AA3 7 LYS A 820 PHE A 824 -1 O PHE A 824 N THR A 807 SHEET 7 AA3 7 VAL A 829 ILE A 832 -1 O VAL A 830 N MET A 823 SHEET 1 AA4 6 ARG A 991 VAL A 993 0 SHEET 2 AA4 6 PRO A 956 VAL A 962 1 N TYR A 961 O VAL A 993 SHEET 3 AA4 6 THR A 937 ARG A 946 -1 N ALA A 940 O VAL A 962 SHEET 4 AA4 6 LEU A 906 SER A 915 -1 N ALA A 912 O ARG A 941 SHEET 5 AA4 6 VAL A1011 GLY A1014 1 O VAL A1013 N ILE A 909 SHEET 6 AA4 6 ILE A1033 ASP A1035 1 O ARG A1034 N PHE A1012 CRYST1 91.480 116.409 257.833 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003878 0.00000