HEADER HYDROLASE 05-APR-19 6RA3 TITLE STRUCTURAL BASIS FOR RECOGNITION AND RING-CLEAVAGE OF THE PSEUDOMONAS TITLE 2 QUINOLONE SIGNAL (PQS) BY AQDC IN COMPLEX WITH ITS PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIOXYGENASE (1H-3-HYDROXY-4-OXOQUINALDINE 2,4- COMPND 3 DIOXYGENASE); COMPND 4 CHAIN: A, F, E; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS SUBSP. ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 1185650; SOURCE 4 GENE: SAMEA2070698_02780, SAMEA2161603_04096, SAMEA2275805_05965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIOXYGENASE; ALPHA/BETA HYDROLASE FOLD, CATALYTIC TRIAD, QUORUM KEYWDS 2 SENSING, PSEUDOMONAS QUINOLONE SIGNAL, PSEUDOMONAS AERUGINOSA, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WULLICH,S.KOBUS,S.H.SMITS,S.FETZNER REVDAT 5 24-JAN-24 6RA3 1 REMARK REVDAT 4 24-JUN-20 6RA3 1 REMARK DBREF HELIX SHEET REVDAT 4 2 1 SITE ATOM REVDAT 3 29-JAN-20 6RA3 1 REMARK REVDAT 2 04-SEP-19 6RA3 1 JRNL REVDAT 1 03-JUL-19 6RA3 0 JRNL AUTH S.C.WULLICH,S.KOBUS,M.WIENHOLD,U.HENNECKE,S.H.J.SMITS, JRNL AUTH 2 S.FETZNER JRNL TITL STRUCTURAL BASIS FOR RECOGNITION AND RING-CLEAVAGE OF THE JRNL TITL 2 PSEUDOMONAS QUINOLONE SIGNAL (PQS) BY AQDC, A MYCOBACTERIAL JRNL TITL 3 DIOXYGENASE OF THE ALPHA / BETA-HYDROLASE FOLD FAMILY. JRNL REF J.STRUCT.BIOL. V. 207 287 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31228546 JRNL DOI 10.1016/J.JSB.2019.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1004 - 5.5152 1.00 3018 154 0.1851 0.2164 REMARK 3 2 5.5152 - 4.3786 1.00 2853 148 0.1440 0.1783 REMARK 3 3 4.3786 - 3.8253 1.00 2797 156 0.1574 0.2351 REMARK 3 4 3.8253 - 3.4757 1.00 2813 131 0.1689 0.2113 REMARK 3 5 3.4757 - 3.2266 1.00 2736 169 0.1883 0.2386 REMARK 3 6 3.2266 - 3.0364 1.00 2762 155 0.1908 0.2336 REMARK 3 7 3.0364 - 2.8844 1.00 2763 140 0.1963 0.2371 REMARK 3 8 2.8844 - 2.7588 1.00 2717 149 0.1952 0.2567 REMARK 3 9 2.7588 - 2.6526 1.00 2741 146 0.2062 0.2747 REMARK 3 10 2.6526 - 2.5611 1.00 2738 136 0.2023 0.2684 REMARK 3 11 2.5611 - 2.4810 1.00 2737 149 0.2022 0.2492 REMARK 3 12 2.4810 - 2.4101 1.00 2718 129 0.2075 0.2713 REMARK 3 13 2.4101 - 2.3467 1.00 2729 132 0.2040 0.2558 REMARK 3 14 2.3467 - 2.2894 1.00 2722 128 0.2125 0.2575 REMARK 3 15 2.2894 - 2.2374 1.00 2725 138 0.2199 0.3048 REMARK 3 16 2.2374 - 2.1898 1.00 2717 147 0.2219 0.3210 REMARK 3 17 2.1898 - 2.1460 1.00 2705 142 0.2340 0.2620 REMARK 3 18 2.1460 - 2.1055 1.00 2721 139 0.2350 0.3114 REMARK 3 19 2.1055 - 2.0679 1.00 2727 134 0.2335 0.3228 REMARK 3 20 2.0679 - 2.0328 1.00 2700 138 0.2548 0.3220 REMARK 3 21 2.0328 - 2.0000 1.00 2680 147 0.2659 0.3494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6397 REMARK 3 ANGLE : 1.066 8711 REMARK 3 CHIRALITY : 0.060 913 REMARK 3 PLANARITY : 0.008 1159 REMARK 3 DIHEDRAL : 12.547 3703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K-W REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.086 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.09956 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 TO 0.15 M MAGNESIUM CHLORIDE, 0.1 REMARK 280 M SODIUM CHLORIDE, 0.1 M MES PH 6.5 AND 30 TO 40 % PEG 400 AT REMARK 280 12C., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.80800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.08650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.08650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.21200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.08650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.08650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.40400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.08650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.08650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 142.21200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.08650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.08650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.40400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.80800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 371 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 494 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 266 REMARK 465 ILE A 267 REMARK 465 MET F -1 REMARK 465 ALA F 265 REMARK 465 ARG F 266 REMARK 465 ILE F 267 REMARK 465 ARG E 266 REMARK 465 ILE E 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A -1 CG SD CE REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 HIS F 214 CG ND1 CD2 CE1 NE2 REMARK 470 PRO F 215 CG CD REMARK 470 LYS F 216 CG CD CE NZ REMARK 470 ILE F 217 CG1 CG2 CD1 REMARK 470 GLU F 219 CG CD OE1 OE2 REMARK 470 MET E -1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 225 HH TYR A 236 1.36 REMARK 500 HE21 GLN F 9 O HOH F 306 1.46 REMARK 500 HG SER A 235 O HOH A 302 1.47 REMARK 500 HH TYR E 168 O HOH E 405 1.48 REMARK 500 O PRO F 215 HH22 ARG F 238 1.49 REMARK 500 HH TYR A 42 O HOH A 304 1.51 REMARK 500 HH TYR F 42 O HOH F 307 1.56 REMARK 500 HE21 GLN A 47 O HOH A 309 1.59 REMARK 500 O HOH F 488 O HOH F 517 1.84 REMARK 500 O HOH A 444 O HOH A 447 1.88 REMARK 500 O LEU F 107 O HOH F 301 1.90 REMARK 500 N ILE F 0 O HOH F 302 1.92 REMARK 500 O GLY F 264 O HOH F 303 1.92 REMARK 500 OE2 GLU E 219 O HOH E 401 1.92 REMARK 500 O ALA E 265 O HOH E 402 1.97 REMARK 500 O HOH F 497 O HOH F 521 1.98 REMARK 500 O2 JWH E 301 O HOH E 403 1.99 REMARK 500 O HOH A 398 O HOH A 453 1.99 REMARK 500 O HIS A 214 N LYS A 216 2.00 REMARK 500 O HOH E 533 O HOH E 586 2.03 REMARK 500 OD1 ASP E 86 O HOH E 404 2.04 REMARK 500 O HOH F 407 O HOH F 467 2.05 REMARK 500 O HOH E 574 O HOH E 618 2.06 REMARK 500 O HOH E 426 O HOH E 450 2.08 REMARK 500 O HOH F 386 O HOH F 490 2.10 REMARK 500 OD1 ASP F 225 O HOH F 304 2.13 REMARK 500 O HOH F 349 O HOH F 427 2.13 REMARK 500 OE2 GLU A 128 O HOH A 301 2.15 REMARK 500 OD1 ASP A 225 OH TYR A 236 2.16 REMARK 500 O HOH F 373 O HOH F 504 2.17 REMARK 500 O HOH F 347 O HOH F 461 2.18 REMARK 500 OH TYR E 168 O HOH E 405 2.18 REMARK 500 O ALA E 155 O HOH E 406 2.19 REMARK 500 O HOH E 592 O HOH E 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 464 O HOH F 478 8555 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO F 215 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -159.78 -124.37 REMARK 500 ASP A 86 -101.99 -87.32 REMARK 500 ALA A 94 -121.09 33.60 REMARK 500 HIS A 214 -70.99 -98.41 REMARK 500 PRO A 215 -42.48 -10.30 REMARK 500 LYS A 216 -111.07 -160.73 REMARK 500 ILE A 217 -69.00 -150.62 REMARK 500 ARG A 237 107.19 -165.45 REMARK 500 HIS A 244 0.30 -69.78 REMARK 500 HIS F 17 -3.78 -144.31 REMARK 500 ASP F 32 -156.45 -126.20 REMARK 500 ASP F 86 -109.13 -101.70 REMARK 500 ALA F 94 -122.01 39.40 REMARK 500 ASP F 119 73.43 40.76 REMARK 500 GLU F 204 73.21 -154.73 REMARK 500 PRO F 215 64.21 62.33 REMARK 500 ILE F 217 -166.99 -115.75 REMARK 500 ASP E 32 -159.60 -127.76 REMARK 500 ASP E 86 -107.21 -88.08 REMARK 500 ALA E 94 -122.77 43.41 REMARK 500 ILE E 121 109.69 -52.06 REMARK 500 ALA E 155 -130.26 49.61 REMARK 500 HIS E 214 -61.41 -98.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 214 PRO A 215 -147.88 REMARK 500 HIS F 214 PRO F 215 -135.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JWH E 301 DBREF1 6RA3 A -1 267 UNP A0A1M8M580_9MYCO DBREF2 6RA3 A A0A1M8M580 1 269 DBREF1 6RA3 F -1 267 UNP A0A1M8M580_9MYCO DBREF2 6RA3 F A0A1M8M580 1 269 DBREF1 6RA3 E -1 267 UNP A0A1M8M580_9MYCO DBREF2 6RA3 E A0A1M8M580 1 269 SEQRES 1 A 269 MET ILE THR THR LYS THR VAL ASN GLY VAL GLN ILE ALA SEQRES 2 A 269 PHE ASP ASP GLN GLY HIS GLU PRO GLY PRO VAL PHE VAL SEQRES 3 A 269 THR LEU SER GLY TRP ALA HIS ASP LEU ARG ALA TYR ASP SEQRES 4 A 269 GLY MET LEU PRO TYR LEU ARG ALA ALA GLN ARG THR VAL SEQRES 5 A 269 ARG VAL CYS TRP ARG GLY HIS GLY PRO ASP ARG ASN LEU SEQRES 6 A 269 VAL GLY ASP PHE GLY ILE ASP GLU MET ALA ALA ASP THR SEQRES 7 A 269 ILE GLY LEU LEU ASP ALA LEU GLU VAL ASP SER PHE VAL SEQRES 8 A 269 PRO ILE ALA HIS ALA HIS GLY GLY TRP ALA ALA LEU GLU SEQRES 9 A 269 ILE ALA ASP ARG LEU GLY ALA GLN ARG VAL PRO ALA VAL SEQRES 10 A 269 MET ILE LEU ASP LEU ILE MET THR PRO ALA PRO ARG GLU SEQRES 11 A 269 PHE VAL ALA ALA LEU HIS GLY ILE GLN ASP PRO GLU ARG SEQRES 12 A 269 TRP LYS GLU GLY ARG ASP GLY LEU VAL GLN SER TRP LEU SEQRES 13 A 269 ALA GLY THR THR ASN GLN ALA VAL LEU ASP HIS VAL ARG SEQRES 14 A 269 TYR ASP SER GLY GLY HIS GLY PHE ASP MET TRP ALA ARG SEQRES 15 A 269 ALA GLY ARG VAL ILE ASP GLU ALA TYR ARG THR TRP GLY SEQRES 16 A 269 SER PRO MET ARG ARG MET GLU ALA LEU ALA GLU PRO CYS SEQRES 17 A 269 ALA ILE ARG HIS VAL PHE SER HIS PRO LYS ILE GLY GLU SEQRES 18 A 269 TYR ASP ALA LEU HIS ASP ASP PHE ALA ALA ARG HIS PRO SEQRES 19 A 269 TRP PHE SER TYR ARG ARG LEU GLY GLY GLU THR HIS PHE SEQRES 20 A 269 PRO GLY ILE GLU LEU PRO GLN GLN VAL ALA ALA GLU ALA SEQRES 21 A 269 ILE ASP LEU LEU ALA GLY ALA ARG ILE SEQRES 1 F 269 MET ILE THR THR LYS THR VAL ASN GLY VAL GLN ILE ALA SEQRES 2 F 269 PHE ASP ASP GLN GLY HIS GLU PRO GLY PRO VAL PHE VAL SEQRES 3 F 269 THR LEU SER GLY TRP ALA HIS ASP LEU ARG ALA TYR ASP SEQRES 4 F 269 GLY MET LEU PRO TYR LEU ARG ALA ALA GLN ARG THR VAL SEQRES 5 F 269 ARG VAL CYS TRP ARG GLY HIS GLY PRO ASP ARG ASN LEU SEQRES 6 F 269 VAL GLY ASP PHE GLY ILE ASP GLU MET ALA ALA ASP THR SEQRES 7 F 269 ILE GLY LEU LEU ASP ALA LEU GLU VAL ASP SER PHE VAL SEQRES 8 F 269 PRO ILE ALA HIS ALA HIS GLY GLY TRP ALA ALA LEU GLU SEQRES 9 F 269 ILE ALA ASP ARG LEU GLY ALA GLN ARG VAL PRO ALA VAL SEQRES 10 F 269 MET ILE LEU ASP LEU ILE MET THR PRO ALA PRO ARG GLU SEQRES 11 F 269 PHE VAL ALA ALA LEU HIS GLY ILE GLN ASP PRO GLU ARG SEQRES 12 F 269 TRP LYS GLU GLY ARG ASP GLY LEU VAL GLN SER TRP LEU SEQRES 13 F 269 ALA GLY THR THR ASN GLN ALA VAL LEU ASP HIS VAL ARG SEQRES 14 F 269 TYR ASP SER GLY GLY HIS GLY PHE ASP MET TRP ALA ARG SEQRES 15 F 269 ALA GLY ARG VAL ILE ASP GLU ALA TYR ARG THR TRP GLY SEQRES 16 F 269 SER PRO MET ARG ARG MET GLU ALA LEU ALA GLU PRO CYS SEQRES 17 F 269 ALA ILE ARG HIS VAL PHE SER HIS PRO LYS ILE GLY GLU SEQRES 18 F 269 TYR ASP ALA LEU HIS ASP ASP PHE ALA ALA ARG HIS PRO SEQRES 19 F 269 TRP PHE SER TYR ARG ARG LEU GLY GLY GLU THR HIS PHE SEQRES 20 F 269 PRO GLY ILE GLU LEU PRO GLN GLN VAL ALA ALA GLU ALA SEQRES 21 F 269 ILE ASP LEU LEU ALA GLY ALA ARG ILE SEQRES 1 E 269 MET ILE THR THR LYS THR VAL ASN GLY VAL GLN ILE ALA SEQRES 2 E 269 PHE ASP ASP GLN GLY HIS GLU PRO GLY PRO VAL PHE VAL SEQRES 3 E 269 THR LEU SER GLY TRP ALA HIS ASP LEU ARG ALA TYR ASP SEQRES 4 E 269 GLY MET LEU PRO TYR LEU ARG ALA ALA GLN ARG THR VAL SEQRES 5 E 269 ARG VAL CYS TRP ARG GLY HIS GLY PRO ASP ARG ASN LEU SEQRES 6 E 269 VAL GLY ASP PHE GLY ILE ASP GLU MET ALA ALA ASP THR SEQRES 7 E 269 ILE GLY LEU LEU ASP ALA LEU GLU VAL ASP SER PHE VAL SEQRES 8 E 269 PRO ILE ALA HIS ALA HIS GLY GLY TRP ALA ALA LEU GLU SEQRES 9 E 269 ILE ALA ASP ARG LEU GLY ALA GLN ARG VAL PRO ALA VAL SEQRES 10 E 269 MET ILE LEU ASP LEU ILE MET THR PRO ALA PRO ARG GLU SEQRES 11 E 269 PHE VAL ALA ALA LEU HIS GLY ILE GLN ASP PRO GLU ARG SEQRES 12 E 269 TRP LYS GLU GLY ARG ASP GLY LEU VAL GLN SER TRP LEU SEQRES 13 E 269 ALA GLY THR THR ASN GLN ALA VAL LEU ASP HIS VAL ARG SEQRES 14 E 269 TYR ASP SER GLY GLY HIS GLY PHE ASP MET TRP ALA ARG SEQRES 15 E 269 ALA GLY ARG VAL ILE ASP GLU ALA TYR ARG THR TRP GLY SEQRES 16 E 269 SER PRO MET ARG ARG MET GLU ALA LEU ALA GLU PRO CYS SEQRES 17 E 269 ALA ILE ARG HIS VAL PHE SER HIS PRO LYS ILE GLY GLU SEQRES 18 E 269 TYR ASP ALA LEU HIS ASP ASP PHE ALA ALA ARG HIS PRO SEQRES 19 E 269 TRP PHE SER TYR ARG ARG LEU GLY GLY GLU THR HIS PHE SEQRES 20 E 269 PRO GLY ILE GLU LEU PRO GLN GLN VAL ALA ALA GLU ALA SEQRES 21 E 269 ILE ASP LEU LEU ALA GLY ALA ARG ILE HET JWH E 301 39 HETNAM JWH 2-(OCTANOYLAMINO)BENZOIC ACID FORMUL 4 JWH C15 H21 N O3 FORMUL 5 HOH *602(H2 O) HELIX 1 AA1 ASP A 32 ASP A 37 5 6 HELIX 2 AA2 MET A 39 GLN A 47 1 9 HELIX 3 AA3 GLY A 68 LEU A 83 1 16 HELIX 4 AA4 GLY A 96 GLY A 108 1 13 HELIX 5 AA5 PRO A 126 ILE A 136 1 11 HELIX 6 AA6 ARG A 141 ALA A 155 1 15 HELIX 7 AA7 ASN A 159 ASP A 169 1 11 HELIX 8 AA8 GLY A 174 GLY A 193 1 20 HELIX 9 AA9 SER A 194 ALA A 201 1 8 HELIX 10 AB1 GLY A 218 HIS A 231 1 14 HELIX 11 AB2 PHE A 245 LEU A 250 1 6 HELIX 12 AB3 LEU A 250 ALA A 265 1 16 HELIX 13 AB4 ASP F 32 ASP F 37 5 6 HELIX 14 AB5 MET F 39 GLN F 47 1 9 HELIX 15 AB6 GLY F 68 LEU F 83 1 16 HELIX 16 AB7 HIS F 95 VAL F 112 1 18 HELIX 17 AB8 PRO F 126 ILE F 136 1 11 HELIX 18 AB9 ARG F 141 ALA F 155 1 15 HELIX 19 AC1 ASN F 159 ASP F 169 1 11 HELIX 20 AC2 GLY F 174 GLY F 193 1 20 HELIX 21 AC3 SER F 194 ALA F 201 1 8 HELIX 22 AC4 GLY F 218 HIS F 231 1 14 HELIX 23 AC5 PHE F 245 LEU F 250 1 6 HELIX 24 AC6 LEU F 250 GLY F 264 1 15 HELIX 25 AC7 ASP E 32 ASP E 37 5 6 HELIX 26 AC8 MET E 39 GLN E 47 1 9 HELIX 27 AC9 GLY E 68 GLU E 84 1 17 HELIX 28 AD1 HIS E 95 VAL E 112 1 18 HELIX 29 AD2 PRO E 126 ILE E 136 1 11 HELIX 30 AD3 ARG E 141 ALA E 155 1 15 HELIX 31 AD4 ASN E 159 ASP E 169 1 11 HELIX 32 AD5 GLY E 174 GLY E 193 1 20 HELIX 33 AD6 SER E 194 ALA E 201 1 8 HELIX 34 AD7 GLY E 218 HIS E 231 1 14 HELIX 35 AD8 PHE E 245 LEU E 250 1 6 HELIX 36 AD9 LEU E 250 ALA E 265 1 16 SHEET 1 AA1 8 THR A 1 VAL A 5 0 SHEET 2 AA1 8 VAL A 8 GLN A 15 -1 O ILE A 10 N LYS A 3 SHEET 3 AA1 8 THR A 49 VAL A 52 -1 O THR A 49 N GLN A 15 SHEET 4 AA1 8 VAL A 22 LEU A 26 1 N PHE A 23 O VAL A 50 SHEET 5 AA1 8 PHE A 88 HIS A 93 1 O ILE A 91 N VAL A 24 SHEET 6 AA1 8 ALA A 114 LEU A 118 1 O MET A 116 N PRO A 90 SHEET 7 AA1 8 ALA A 207 PHE A 212 1 O VAL A 211 N ILE A 117 SHEET 8 AA1 8 PHE A 234 ARG A 238 1 O SER A 235 N ILE A 208 SHEET 1 AA2 8 THR F 1 VAL F 5 0 SHEET 2 AA2 8 VAL F 8 GLN F 15 -1 O ILE F 10 N LYS F 3 SHEET 3 AA2 8 THR F 49 VAL F 52 -1 O THR F 49 N GLN F 15 SHEET 4 AA2 8 VAL F 22 LEU F 26 1 N PHE F 23 O VAL F 50 SHEET 5 AA2 8 PHE F 88 HIS F 93 1 O ILE F 91 N VAL F 24 SHEET 6 AA2 8 ALA F 114 LEU F 118 1 O MET F 116 N PRO F 90 SHEET 7 AA2 8 ALA F 207 PHE F 212 1 O ARG F 209 N ILE F 117 SHEET 8 AA2 8 PHE F 234 ARG F 238 1 O SER F 235 N ILE F 208 SHEET 1 AA3 8 THR E 1 VAL E 5 0 SHEET 2 AA3 8 VAL E 8 GLN E 15 -1 O ILE E 10 N LYS E 3 SHEET 3 AA3 8 THR E 49 VAL E 52 -1 O THR E 49 N GLN E 15 SHEET 4 AA3 8 VAL E 22 LEU E 26 1 N PHE E 23 O VAL E 50 SHEET 5 AA3 8 PHE E 88 HIS E 93 1 O VAL E 89 N VAL E 22 SHEET 6 AA3 8 ALA E 114 LEU E 118 1 O MET E 116 N ALA E 92 SHEET 7 AA3 8 ALA E 207 PHE E 212 1 O ARG E 209 N ILE E 117 SHEET 8 AA3 8 PHE E 234 ARG E 238 1 O ARG E 237 N HIS E 210 CISPEP 1 ILE A 217 GLY A 218 0 4.75 SITE 1 AC1 14 TRP E 29 HIS E 31 HIS E 93 ALA E 94 SITE 2 AC1 14 HIS E 95 PHE E 129 TRP E 153 VAL E 166 SITE 3 AC1 14 TRP E 178 ILE E 185 HIS E 244 PHE E 245 SITE 4 AC1 14 HOH E 403 HOH E 568 CRYST1 96.173 96.173 189.616 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005274 0.00000