data_6RA4 # _entry.id 6RA4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6RA4 pdb_00006ra4 10.2210/pdb6ra4/pdb WWPDB D_1292101678 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-08 2 'Structure model' 1 1 2019-06-05 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_PDB_rev 4 2 'Structure model' database_PDB_rev_record 5 2 'Structure model' pdbx_database_proc 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RA4 _pdbx_database_status.recvd_initial_deposition_date 2019-04-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rondeau, J.-M.' 1 0000-0003-0575-5480 'Bourgier, E.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Chem.Inf.Model. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1549-960X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 1897 _citation.page_last 1908 _citation.title ;How to Computationally Stack the Deck for Hit-to-Lead Generation: In Silico Molecular Interaction Energy Profiling for de Novo siRNA Guide Strand Surrogate Selection. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jcim.8b00892 _citation.pdbx_database_id_PubMed 31021613 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Greenidge, P.A.' 1 ? primary 'Blommers, M.J.J.' 2 ? primary 'Priestle, J.P.' 3 ? primary 'Hunziker, J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein argonaute-2' 15817.429 2 3.1.26.- ? ? ? 2 polymer syn ;RNA (5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3') ; 2808.703 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;hAgo2,Argonaute RISC catalytic component 2,Eukaryotic translation initiation factor 2C 2,eIF2C 2,PAZ Piwi domain protein,PPD,Protein slicer ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPTAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQE SGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKK ; ;GPTAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQE SGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKK ; A,B ? 2 polyribonucleotide no no CGUGACUCU CGUGACUCU L,M ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 ALA n 1 5 PHE n 1 6 TYR n 1 7 LYS n 1 8 ALA n 1 9 GLN n 1 10 PRO n 1 11 VAL n 1 12 ILE n 1 13 GLU n 1 14 PHE n 1 15 VAL n 1 16 CYS n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASP n 1 21 PHE n 1 22 LYS n 1 23 SER n 1 24 ILE n 1 25 GLU n 1 26 GLU n 1 27 GLN n 1 28 GLN n 1 29 LYS n 1 30 PRO n 1 31 LEU n 1 32 THR n 1 33 ASP n 1 34 SER n 1 35 GLN n 1 36 ARG n 1 37 VAL n 1 38 LYS n 1 39 PHE n 1 40 THR n 1 41 LYS n 1 42 GLU n 1 43 ILE n 1 44 LYS n 1 45 GLY n 1 46 LEU n 1 47 LYS n 1 48 VAL n 1 49 GLU n 1 50 ILE n 1 51 THR n 1 52 HIS n 1 53 CYS n 1 54 GLY n 1 55 GLN n 1 56 MET n 1 57 LYS n 1 58 ARG n 1 59 LYS n 1 60 TYR n 1 61 ARG n 1 62 VAL n 1 63 CYS n 1 64 ASN n 1 65 VAL n 1 66 THR n 1 67 ARG n 1 68 ARG n 1 69 PRO n 1 70 ALA n 1 71 SER n 1 72 HIS n 1 73 GLN n 1 74 THR n 1 75 PHE n 1 76 PRO n 1 77 LEU n 1 78 GLN n 1 79 GLN n 1 80 GLU n 1 81 SER n 1 82 GLY n 1 83 GLN n 1 84 THR n 1 85 VAL n 1 86 GLU n 1 87 CYS n 1 88 THR n 1 89 VAL n 1 90 ALA n 1 91 GLN n 1 92 TYR n 1 93 PHE n 1 94 LYS n 1 95 ASP n 1 96 ARG n 1 97 HIS n 1 98 LYS n 1 99 LEU n 1 100 VAL n 1 101 LEU n 1 102 ARG n 1 103 TYR n 1 104 PRO n 1 105 HIS n 1 106 LEU n 1 107 PRO n 1 108 CYS n 1 109 LEU n 1 110 GLN n 1 111 VAL n 1 112 GLY n 1 113 GLN n 1 114 GLU n 1 115 GLN n 1 116 LYS n 1 117 HIS n 1 118 THR n 1 119 TYR n 1 120 LEU n 1 121 PRO n 1 122 LEU n 1 123 GLU n 1 124 VAL n 1 125 CYS n 1 126 ASN n 1 127 ILE n 1 128 VAL n 1 129 ALA n 1 130 GLY n 1 131 GLN n 1 132 ARG n 1 133 CYS n 1 134 ILE n 1 135 LYS n 1 136 LYS n 2 1 C n 2 2 G n 2 3 U n 2 4 G n 2 5 A n 2 6 C n 2 7 U n 2 8 C n 2 9 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 136 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGO2, EIF2C2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'BL21(DE3)*' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 212 ? ? ? A . n A 1 2 PRO 2 213 213 PRO PRO A . n A 1 3 THR 3 214 214 THR THR A . n A 1 4 ALA 4 215 215 ALA ALA A . n A 1 5 PHE 5 216 216 PHE PHE A . n A 1 6 TYR 6 217 217 TYR TYR A . n A 1 7 LYS 7 218 218 LYS LYS A . n A 1 8 ALA 8 219 219 ALA ALA A . n A 1 9 GLN 9 220 220 GLN GLN A . n A 1 10 PRO 10 221 221 PRO PRO A . n A 1 11 VAL 11 222 222 VAL VAL A . n A 1 12 ILE 12 223 223 ILE ILE A . n A 1 13 GLU 13 224 224 GLU GLU A . n A 1 14 PHE 14 225 225 PHE PHE A . n A 1 15 VAL 15 226 226 VAL VAL A . n A 1 16 CYS 16 227 227 CYS CYS A . n A 1 17 GLU 17 228 228 GLU GLU A . n A 1 18 VAL 18 229 229 VAL VAL A . n A 1 19 LEU 19 230 230 LEU LEU A . n A 1 20 ASP 20 231 231 ASP ASP A . n A 1 21 PHE 21 232 232 PHE PHE A . n A 1 22 LYS 22 233 233 LYS LYS A . n A 1 23 SER 23 234 234 SER SER A . n A 1 24 ILE 24 235 235 ILE ILE A . n A 1 25 GLU 25 236 236 GLU GLU A . n A 1 26 GLU 26 237 237 GLU GLU A . n A 1 27 GLN 27 238 238 GLN GLN A . n A 1 28 GLN 28 239 239 GLN GLN A . n A 1 29 LYS 29 240 240 LYS LYS A . n A 1 30 PRO 30 241 241 PRO PRO A . n A 1 31 LEU 31 242 242 LEU LEU A . n A 1 32 THR 32 243 243 THR THR A . n A 1 33 ASP 33 244 244 ASP ASP A . n A 1 34 SER 34 245 245 SER SER A . n A 1 35 GLN 35 246 246 GLN GLN A . n A 1 36 ARG 36 247 247 ARG ARG A . n A 1 37 VAL 37 248 248 VAL VAL A . n A 1 38 LYS 38 249 249 LYS LYS A . n A 1 39 PHE 39 250 250 PHE PHE A . n A 1 40 THR 40 251 251 THR THR A . n A 1 41 LYS 41 252 252 LYS LYS A . n A 1 42 GLU 42 253 253 GLU GLU A . n A 1 43 ILE 43 254 254 ILE ILE A . n A 1 44 LYS 44 255 255 LYS LYS A . n A 1 45 GLY 45 256 256 GLY GLY A . n A 1 46 LEU 46 257 257 LEU LEU A . n A 1 47 LYS 47 258 258 LYS LYS A . n A 1 48 VAL 48 259 259 VAL VAL A . n A 1 49 GLU 49 260 260 GLU GLU A . n A 1 50 ILE 50 261 261 ILE ILE A . n A 1 51 THR 51 262 262 THR THR A . n A 1 52 HIS 52 263 263 HIS HIS A . n A 1 53 CYS 53 264 264 CYS CYS A . n A 1 54 GLY 54 265 265 GLY GLY A . n A 1 55 GLN 55 266 266 GLN GLN A . n A 1 56 MET 56 267 267 MET MET A . n A 1 57 LYS 57 268 268 LYS LYS A . n A 1 58 ARG 58 269 269 ARG ARG A . n A 1 59 LYS 59 270 270 LYS LYS A . n A 1 60 TYR 60 271 271 TYR TYR A . n A 1 61 ARG 61 272 272 ARG ARG A . n A 1 62 VAL 62 273 273 VAL VAL A . n A 1 63 CYS 63 274 274 CYS CYS A . n A 1 64 ASN 64 275 275 ASN ASN A . n A 1 65 VAL 65 276 276 VAL VAL A . n A 1 66 THR 66 277 277 THR THR A . n A 1 67 ARG 67 278 278 ARG ARG A . n A 1 68 ARG 68 279 279 ARG ARG A . n A 1 69 PRO 69 280 280 PRO PRO A . n A 1 70 ALA 70 281 281 ALA ALA A . n A 1 71 SER 71 282 282 SER SER A . n A 1 72 HIS 72 283 283 HIS HIS A . n A 1 73 GLN 73 284 284 GLN GLN A . n A 1 74 THR 74 285 285 THR THR A . n A 1 75 PHE 75 286 286 PHE PHE A . n A 1 76 PRO 76 287 287 PRO PRO A . n A 1 77 LEU 77 288 288 LEU LEU A . n A 1 78 GLN 78 289 ? ? ? A . n A 1 79 GLN 79 290 ? ? ? A . n A 1 80 GLU 80 291 ? ? ? A . n A 1 81 SER 81 292 ? ? ? A . n A 1 82 GLY 82 293 ? ? ? A . n A 1 83 GLN 83 294 ? ? ? A . n A 1 84 THR 84 295 295 THR THR A . n A 1 85 VAL 85 296 296 VAL VAL A . n A 1 86 GLU 86 297 297 GLU GLU A . n A 1 87 CYS 87 298 298 CYS CYS A . n A 1 88 THR 88 299 299 THR THR A . n A 1 89 VAL 89 300 300 VAL VAL A . n A 1 90 ALA 90 301 301 ALA ALA A . n A 1 91 GLN 91 302 302 GLN GLN A . n A 1 92 TYR 92 303 303 TYR TYR A . n A 1 93 PHE 93 304 304 PHE PHE A . n A 1 94 LYS 94 305 305 LYS LYS A . n A 1 95 ASP 95 306 306 ASP ASP A . n A 1 96 ARG 96 307 307 ARG ARG A . n A 1 97 HIS 97 308 308 HIS HIS A . n A 1 98 LYS 98 309 309 LYS LYS A . n A 1 99 LEU 99 310 310 LEU LEU A . n A 1 100 VAL 100 311 311 VAL VAL A . n A 1 101 LEU 101 312 312 LEU LEU A . n A 1 102 ARG 102 313 313 ARG ARG A . n A 1 103 TYR 103 314 314 TYR TYR A . n A 1 104 PRO 104 315 315 PRO PRO A . n A 1 105 HIS 105 316 316 HIS HIS A . n A 1 106 LEU 106 317 317 LEU LEU A . n A 1 107 PRO 107 318 318 PRO PRO A . n A 1 108 CYS 108 319 319 CYS CYS A . n A 1 109 LEU 109 320 320 LEU LEU A . n A 1 110 GLN 110 321 321 GLN GLN A . n A 1 111 VAL 111 322 322 VAL VAL A . n A 1 112 GLY 112 323 323 GLY GLY A . n A 1 113 GLN 113 324 324 GLN GLN A . n A 1 114 GLU 114 325 325 GLU GLU A . n A 1 115 GLN 115 326 326 GLN GLN A . n A 1 116 LYS 116 327 327 LYS LYS A . n A 1 117 HIS 117 328 328 HIS HIS A . n A 1 118 THR 118 329 329 THR THR A . n A 1 119 TYR 119 330 330 TYR TYR A . n A 1 120 LEU 120 331 331 LEU LEU A . n A 1 121 PRO 121 332 332 PRO PRO A . n A 1 122 LEU 122 333 333 LEU LEU A . n A 1 123 GLU 123 334 334 GLU GLU A . n A 1 124 VAL 124 335 335 VAL VAL A . n A 1 125 CYS 125 336 336 CYS CYS A . n A 1 126 ASN 126 337 337 ASN ASN A . n A 1 127 ILE 127 338 338 ILE ILE A . n A 1 128 VAL 128 339 339 VAL VAL A . n A 1 129 ALA 129 340 340 ALA ALA A . n A 1 130 GLY 130 341 341 GLY GLY A . n A 1 131 GLN 131 342 342 GLN GLN A . n A 1 132 ARG 132 343 343 ARG ARG A . n A 1 133 CYS 133 344 344 CYS CYS A . n A 1 134 ILE 134 345 345 ILE ILE A . n A 1 135 LYS 135 346 ? ? ? A . n A 1 136 LYS 136 347 ? ? ? A . n B 1 1 GLY 1 212 212 GLY GLY B . n B 1 2 PRO 2 213 213 PRO PRO B . n B 1 3 THR 3 214 214 THR THR B . n B 1 4 ALA 4 215 215 ALA ALA B . n B 1 5 PHE 5 216 216 PHE PHE B . n B 1 6 TYR 6 217 217 TYR TYR B . n B 1 7 LYS 7 218 218 LYS LYS B . n B 1 8 ALA 8 219 219 ALA ALA B . n B 1 9 GLN 9 220 220 GLN GLN B . n B 1 10 PRO 10 221 221 PRO PRO B . n B 1 11 VAL 11 222 222 VAL VAL B . n B 1 12 ILE 12 223 223 ILE ILE B . n B 1 13 GLU 13 224 224 GLU GLU B . n B 1 14 PHE 14 225 225 PHE PHE B . n B 1 15 VAL 15 226 226 VAL VAL B . n B 1 16 CYS 16 227 227 CYS CYS B . n B 1 17 GLU 17 228 228 GLU GLU B . n B 1 18 VAL 18 229 229 VAL VAL B . n B 1 19 LEU 19 230 230 LEU LEU B . n B 1 20 ASP 20 231 231 ASP ASP B . n B 1 21 PHE 21 232 232 PHE PHE B . n B 1 22 LYS 22 233 233 LYS LYS B . n B 1 23 SER 23 234 234 SER SER B . n B 1 24 ILE 24 235 235 ILE ILE B . n B 1 25 GLU 25 236 236 GLU GLU B . n B 1 26 GLU 26 237 237 GLU GLU B . n B 1 27 GLN 27 238 238 GLN GLN B . n B 1 28 GLN 28 239 239 GLN GLN B . n B 1 29 LYS 29 240 240 LYS LYS B . n B 1 30 PRO 30 241 241 PRO PRO B . n B 1 31 LEU 31 242 242 LEU LEU B . n B 1 32 THR 32 243 243 THR THR B . n B 1 33 ASP 33 244 244 ASP ASP B . n B 1 34 SER 34 245 245 SER SER B . n B 1 35 GLN 35 246 246 GLN GLN B . n B 1 36 ARG 36 247 247 ARG ARG B . n B 1 37 VAL 37 248 248 VAL VAL B . n B 1 38 LYS 38 249 249 LYS LYS B . n B 1 39 PHE 39 250 250 PHE PHE B . n B 1 40 THR 40 251 251 THR THR B . n B 1 41 LYS 41 252 252 LYS LYS B . n B 1 42 GLU 42 253 253 GLU GLU B . n B 1 43 ILE 43 254 254 ILE ILE B . n B 1 44 LYS 44 255 255 LYS LYS B . n B 1 45 GLY 45 256 256 GLY GLY B . n B 1 46 LEU 46 257 257 LEU LEU B . n B 1 47 LYS 47 258 258 LYS LYS B . n B 1 48 VAL 48 259 259 VAL VAL B . n B 1 49 GLU 49 260 260 GLU GLU B . n B 1 50 ILE 50 261 261 ILE ILE B . n B 1 51 THR 51 262 262 THR THR B . n B 1 52 HIS 52 263 263 HIS HIS B . n B 1 53 CYS 53 264 264 CYS CYS B . n B 1 54 GLY 54 265 265 GLY GLY B . n B 1 55 GLN 55 266 266 GLN GLN B . n B 1 56 MET 56 267 267 MET MET B . n B 1 57 LYS 57 268 268 LYS LYS B . n B 1 58 ARG 58 269 269 ARG ARG B . n B 1 59 LYS 59 270 270 LYS LYS B . n B 1 60 TYR 60 271 271 TYR TYR B . n B 1 61 ARG 61 272 272 ARG ARG B . n B 1 62 VAL 62 273 273 VAL VAL B . n B 1 63 CYS 63 274 274 CYS CYS B . n B 1 64 ASN 64 275 275 ASN ASN B . n B 1 65 VAL 65 276 276 VAL VAL B . n B 1 66 THR 66 277 277 THR THR B . n B 1 67 ARG 67 278 278 ARG ARG B . n B 1 68 ARG 68 279 279 ARG ARG B . n B 1 69 PRO 69 280 280 PRO PRO B . n B 1 70 ALA 70 281 281 ALA ALA B . n B 1 71 SER 71 282 282 SER SER B . n B 1 72 HIS 72 283 283 HIS HIS B . n B 1 73 GLN 73 284 284 GLN GLN B . n B 1 74 THR 74 285 285 THR THR B . n B 1 75 PHE 75 286 286 PHE PHE B . n B 1 76 PRO 76 287 287 PRO PRO B . n B 1 77 LEU 77 288 288 LEU LEU B . n B 1 78 GLN 78 289 289 GLN GLN B . n B 1 79 GLN 79 290 ? ? ? B . n B 1 80 GLU 80 291 ? ? ? B . n B 1 81 SER 81 292 ? ? ? B . n B 1 82 GLY 82 293 ? ? ? B . n B 1 83 GLN 83 294 ? ? ? B . n B 1 84 THR 84 295 295 THR THR B . n B 1 85 VAL 85 296 296 VAL VAL B . n B 1 86 GLU 86 297 297 GLU GLU B . n B 1 87 CYS 87 298 298 CYS CYS B . n B 1 88 THR 88 299 299 THR THR B . n B 1 89 VAL 89 300 300 VAL VAL B . n B 1 90 ALA 90 301 301 ALA ALA B . n B 1 91 GLN 91 302 302 GLN GLN B . n B 1 92 TYR 92 303 303 TYR TYR B . n B 1 93 PHE 93 304 304 PHE PHE B . n B 1 94 LYS 94 305 305 LYS LYS B . n B 1 95 ASP 95 306 306 ASP ASP B . n B 1 96 ARG 96 307 307 ARG ARG B . n B 1 97 HIS 97 308 308 HIS HIS B . n B 1 98 LYS 98 309 309 LYS LYS B . n B 1 99 LEU 99 310 310 LEU LEU B . n B 1 100 VAL 100 311 311 VAL VAL B . n B 1 101 LEU 101 312 312 LEU LEU B . n B 1 102 ARG 102 313 313 ARG ARG B . n B 1 103 TYR 103 314 314 TYR TYR B . n B 1 104 PRO 104 315 315 PRO PRO B . n B 1 105 HIS 105 316 316 HIS HIS B . n B 1 106 LEU 106 317 317 LEU LEU B . n B 1 107 PRO 107 318 318 PRO PRO B . n B 1 108 CYS 108 319 319 CYS CYS B . n B 1 109 LEU 109 320 320 LEU LEU B . n B 1 110 GLN 110 321 321 GLN GLN B . n B 1 111 VAL 111 322 322 VAL VAL B . n B 1 112 GLY 112 323 323 GLY GLY B . n B 1 113 GLN 113 324 324 GLN GLN B . n B 1 114 GLU 114 325 325 GLU GLU B . n B 1 115 GLN 115 326 326 GLN GLN B . n B 1 116 LYS 116 327 327 LYS LYS B . n B 1 117 HIS 117 328 328 HIS HIS B . n B 1 118 THR 118 329 329 THR THR B . n B 1 119 TYR 119 330 330 TYR TYR B . n B 1 120 LEU 120 331 331 LEU LEU B . n B 1 121 PRO 121 332 332 PRO PRO B . n B 1 122 LEU 122 333 333 LEU LEU B . n B 1 123 GLU 123 334 334 GLU GLU B . n B 1 124 VAL 124 335 335 VAL VAL B . n B 1 125 CYS 125 336 336 CYS CYS B . n B 1 126 ASN 126 337 337 ASN ASN B . n B 1 127 ILE 127 338 338 ILE ILE B . n B 1 128 VAL 128 339 339 VAL VAL B . n B 1 129 ALA 129 340 340 ALA ALA B . n B 1 130 GLY 130 341 341 GLY GLY B . n B 1 131 GLN 131 342 342 GLN GLN B . n B 1 132 ARG 132 343 343 ARG ARG B . n B 1 133 CYS 133 344 344 CYS CYS B . n B 1 134 ILE 134 345 345 ILE ILE B . n B 1 135 LYS 135 346 346 LYS LYS B . n B 1 136 LYS 136 347 ? ? ? B . n C 2 1 C 1 401 401 C C L . n C 2 2 G 2 402 402 G G L . n C 2 3 U 3 403 403 U U L . n C 2 4 G 4 404 404 G G L . n C 2 5 A 5 405 405 A A L . n C 2 6 C 6 406 406 C C L . n C 2 7 U 7 407 407 U U L . n C 2 8 C 8 408 408 C C L . n C 2 9 U 9 409 409 U U L . n D 2 1 C 1 401 401 C C M . n D 2 2 G 2 402 402 G G M . n D 2 3 U 3 403 403 U U M . n D 2 4 G 4 404 404 G G M . n D 2 5 A 5 405 405 A A M . n D 2 6 C 6 406 406 C C M . n D 2 7 U 7 407 407 U U M . n D 2 8 C 8 408 408 C C M . n D 2 9 U 9 409 409 U U M . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 501 2 GOL GOL L . F 3 GOL 1 501 1 GOL GOL M . G 4 HOH 1 401 76 HOH HOH A . G 4 HOH 2 402 51 HOH HOH A . G 4 HOH 3 403 50 HOH HOH A . G 4 HOH 4 404 95 HOH HOH A . G 4 HOH 5 405 104 HOH HOH A . G 4 HOH 6 406 37 HOH HOH A . G 4 HOH 7 407 17 HOH HOH A . G 4 HOH 8 408 27 HOH HOH A . G 4 HOH 9 409 53 HOH HOH A . G 4 HOH 10 410 41 HOH HOH A . G 4 HOH 11 411 1 HOH HOH A . G 4 HOH 12 412 85 HOH HOH A . G 4 HOH 13 413 66 HOH HOH A . G 4 HOH 14 414 47 HOH HOH A . G 4 HOH 15 415 57 HOH HOH A . G 4 HOH 16 416 5 HOH HOH A . G 4 HOH 17 417 15 HOH HOH A . G 4 HOH 18 418 52 HOH HOH A . G 4 HOH 19 419 69 HOH HOH A . G 4 HOH 20 420 21 HOH HOH A . G 4 HOH 21 421 108 HOH HOH A . G 4 HOH 22 422 11 HOH HOH A . G 4 HOH 23 423 72 HOH HOH A . G 4 HOH 24 424 34 HOH HOH A . G 4 HOH 25 425 23 HOH HOH A . G 4 HOH 26 426 88 HOH HOH A . G 4 HOH 27 427 28 HOH HOH A . G 4 HOH 28 428 93 HOH HOH A . G 4 HOH 29 429 75 HOH HOH A . G 4 HOH 30 430 18 HOH HOH A . G 4 HOH 31 431 40 HOH HOH A . G 4 HOH 32 432 73 HOH HOH A . G 4 HOH 33 433 83 HOH HOH A . G 4 HOH 34 434 81 HOH HOH A . G 4 HOH 35 435 107 HOH HOH A . G 4 HOH 36 436 55 HOH HOH A . G 4 HOH 37 437 79 HOH HOH A . G 4 HOH 38 438 82 HOH HOH A . G 4 HOH 39 439 56 HOH HOH A . H 4 HOH 1 401 71 HOH HOH B . H 4 HOH 2 402 78 HOH HOH B . H 4 HOH 3 403 54 HOH HOH B . H 4 HOH 4 404 64 HOH HOH B . H 4 HOH 5 405 59 HOH HOH B . H 4 HOH 6 406 38 HOH HOH B . H 4 HOH 7 407 100 HOH HOH B . H 4 HOH 8 408 13 HOH HOH B . H 4 HOH 9 409 43 HOH HOH B . H 4 HOH 10 410 36 HOH HOH B . H 4 HOH 11 411 14 HOH HOH B . H 4 HOH 12 412 35 HOH HOH B . H 4 HOH 13 413 97 HOH HOH B . H 4 HOH 14 414 58 HOH HOH B . H 4 HOH 15 415 33 HOH HOH B . H 4 HOH 16 416 25 HOH HOH B . H 4 HOH 17 417 62 HOH HOH B . H 4 HOH 18 418 22 HOH HOH B . H 4 HOH 19 419 103 HOH HOH B . H 4 HOH 20 420 49 HOH HOH B . H 4 HOH 21 421 31 HOH HOH B . H 4 HOH 22 422 68 HOH HOH B . H 4 HOH 23 423 45 HOH HOH B . H 4 HOH 24 424 77 HOH HOH B . H 4 HOH 25 425 94 HOH HOH B . H 4 HOH 26 426 89 HOH HOH B . H 4 HOH 27 427 29 HOH HOH B . I 4 HOH 1 601 84 HOH HOH L . I 4 HOH 2 602 26 HOH HOH L . I 4 HOH 3 603 2 HOH HOH L . I 4 HOH 4 604 98 HOH HOH L . I 4 HOH 5 605 7 HOH HOH L . I 4 HOH 6 606 32 HOH HOH L . I 4 HOH 7 607 67 HOH HOH L . I 4 HOH 8 608 42 HOH HOH L . I 4 HOH 9 609 4 HOH HOH L . I 4 HOH 10 610 16 HOH HOH L . I 4 HOH 11 611 9 HOH HOH L . I 4 HOH 12 612 90 HOH HOH L . I 4 HOH 13 613 8 HOH HOH L . I 4 HOH 14 614 30 HOH HOH L . I 4 HOH 15 615 19 HOH HOH L . I 4 HOH 16 616 96 HOH HOH L . J 4 HOH 1 601 99 HOH HOH M . J 4 HOH 2 602 61 HOH HOH M . J 4 HOH 3 603 39 HOH HOH M . J 4 HOH 4 604 74 HOH HOH M . J 4 HOH 5 605 63 HOH HOH M . J 4 HOH 6 606 10 HOH HOH M . J 4 HOH 7 607 106 HOH HOH M . J 4 HOH 8 608 86 HOH HOH M . J 4 HOH 9 609 12 HOH HOH M . J 4 HOH 10 610 6 HOH HOH M . J 4 HOH 11 611 48 HOH HOH M . J 4 HOH 12 612 46 HOH HOH M . J 4 HOH 13 613 3 HOH HOH M . J 4 HOH 14 614 80 HOH HOH M . J 4 HOH 15 615 24 HOH HOH M . J 4 HOH 16 616 102 HOH HOH M . J 4 HOH 17 617 60 HOH HOH M . J 4 HOH 18 618 91 HOH HOH M . J 4 HOH 19 619 87 HOH HOH M . J 4 HOH 20 620 44 HOH HOH M . J 4 HOH 21 621 70 HOH HOH M . J 4 HOH 22 622 65 HOH HOH M . J 4 HOH 23 623 20 HOH HOH M . J 4 HOH 24 624 92 HOH HOH M . J 4 HOH 25 625 101 HOH HOH M . J 4 HOH 26 626 105 HOH HOH M . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? 1.98.7 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? 1.98.7 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? 2002 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6RA4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 72.617 _cell.length_a_esd ? _cell.length_b 87.672 _cell.length_b_esd ? _cell.length_c 56.832 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RA4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.34 _exptl_crystal.description rods _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Drop was a 1:1 mix of protein stock (9.4MG/ML HAGO2 PAZ [214 TO 347] IN 100MM POTASSIUM CHLORIDE, 10MM DTT, 5MM HEPES/KOH PH 7.6, WITH A 1.1-FOLD EXCESS OF OLIGONUCLEOTIDE ADDED FROM A 1.75MM STOCK SOLUTION IN 100MM POTASSIUM CHLORIDE, 10MM DTT, 5MM HEPES) and reservoir solution (0.2M sodium CHLORIDE 20% PEG 3,350) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.000 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type MARRESEARCH _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-07-30 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99990 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99990 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 31.400 _reflns.entry_id 6RA4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 100.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29356 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.300 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 48.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.017 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 213970 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.900 _reflns_shell.d_res_low 1.970 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.290 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3009 _reflns_shell.percent_possible_all 99.000 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.504 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.546 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -6.6700 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 3.0500 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 3.6200 _refine.B_iso_max 99.110 _refine.B_iso_mean 45.1000 _refine.B_iso_min 24.400 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RA4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 28.8900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29003 _refine.ls_number_reflns_R_free 1425 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0000 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2680 _refine.ls_R_factor_R_free_error 0.0070 _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2390 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 43.0227 _refine.solvent_model_param_ksol 0.3696 _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF 18239992.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6RA4 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free 0.340 _refine_analyze.Luzzati_coordinate_error_obs 0.290 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_sigma_a_free 0.290 _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs 0.240 _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 28.8900 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 2592 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 275 _refine_hist.pdbx_B_iso_mean_ligand 55.38 _refine_hist.pdbx_B_iso_mean_solvent 42.19 _refine_hist.pdbx_number_atoms_protein 2102 _refine_hist.pdbx_number_atoms_nucleic_acid 370 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? ? ? c_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.300 ? ? ? c_angle_deg ? ? 'X-RAY DIFFRACTION' ? 21.200 ? ? ? c_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 1.240 ? ? ? c_improper_angle_d ? ? 'X-RAY DIFFRACTION' ? 1.650 1.500 ? ? c_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.600 2.000 ? ? c_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.210 2.000 ? ? c_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.390 2.500 ? ? c_scangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 2.0200 _refine_ls_shell.number_reflns_all 4753 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 256 _refine_ls_shell.number_reflns_R_work 4497 _refine_ls_shell.percent_reflns_obs 99.2000 _refine_ls_shell.percent_reflns_R_free 5.4000 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3710 _refine_ls_shell.R_factor_R_free_error 0.0230 _refine_ls_shell.R_factor_R_work 0.3060 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 1 'X-RAY DIFFRACTION' protein_rep.param protein.top 2 'X-RAY DIFFRACTION' water_rep.param water.top 3 'X-RAY DIFFRACTION' dna-rna.param dna-rna.top 4 'X-RAY DIFFRACTION' glycerol.param glycerol.top # _database_PDB_matrix.entry_id 6RA4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 6RA4 _struct.title 'Human ARGONAUTE-2 PAZ DOMAIN (214-347) IN COMPLEX WITH CGUGACUCU' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RA4 _struct_keywords.text 'SIRNA, PAZ DOMAIN, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP AGO2_HUMAN Q9UKV8 ? 1 ;TAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESG QTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKK ; 222 2 PDB 6RA4 6RA4 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6RA4 A 3 ? 136 ? Q9UKV8 222 ? 355 ? 214 347 2 1 6RA4 B 3 ? 136 ? Q9UKV8 222 ? 355 ? 214 347 3 2 6RA4 L 1 ? 9 ? 6RA4 401 ? 409 ? 401 409 4 2 6RA4 M 1 ? 9 ? 6RA4 401 ? 409 ? 401 409 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6RA4 GLY A 1 ? UNP Q9UKV8 ? ? 'expression tag' 212 1 1 6RA4 PRO A 2 ? UNP Q9UKV8 ? ? 'expression tag' 213 2 2 6RA4 GLY B 1 ? UNP Q9UKV8 ? ? 'expression tag' 212 3 2 6RA4 PRO B 2 ? UNP Q9UKV8 ? ? 'expression tag' 213 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4570 ? 1 MORE -36 ? 1 'SSA (A^2)' 16480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 10 ? ASP A 20 ? PRO A 221 ASP A 231 1 ? 11 HELX_P HELX_P2 AA2 SER A 23 ? GLN A 27 ? SER A 234 GLN A 238 5 ? 5 HELX_P HELX_P3 AA3 THR A 32 ? LYS A 44 ? THR A 243 LYS A 255 1 ? 13 HELX_P HELX_P4 AA4 VAL A 89 ? ARG A 96 ? VAL A 300 ARG A 307 1 ? 8 HELX_P HELX_P5 AA5 GLN A 113 ? HIS A 117 ? GLN A 324 HIS A 328 5 ? 5 HELX_P HELX_P6 AA6 PRO B 10 ? LEU B 19 ? PRO B 221 LEU B 230 1 ? 10 HELX_P HELX_P7 AA7 SER B 23 ? GLN B 27 ? SER B 234 GLN B 238 5 ? 5 HELX_P HELX_P8 AA8 THR B 32 ? LYS B 44 ? THR B 243 LYS B 255 1 ? 13 HELX_P HELX_P9 AA9 VAL B 89 ? LYS B 98 ? VAL B 300 LYS B 309 1 ? 10 HELX_P HELX_P10 AB1 GLN B 113 ? HIS B 117 ? GLN B 324 HIS B 328 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C C 1 N4 ? ? ? 1_555 D U 7 O4 ? ? L C 401 M U 407 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog2 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 6 N3 ? ? L G 402 M C 406 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 6 O2 ? ? L G 402 M C 406 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 6 N4 ? ? L G 402 M C 406 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 5 N1 ? ? L U 403 M A 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 5 N6 ? ? L U 403 M A 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 4 N7 ? ? ? 1_555 D G 4 N2 ? ? L G 404 M G 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? C G 4 O6 ? ? ? 1_555 D G 4 N1 ? ? L G 404 M G 404 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 3 N3 ? ? L A 405 M U 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 3 O4 ? ? L A 405 M U 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 2 N1 ? ? L C 406 M G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 2 O6 ? ? L C 406 M G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 2 N2 ? ? L C 406 M G 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 5 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 118 ? PRO A 121 ? THR A 329 PRO A 332 AA1 2 CYS A 108 ? VAL A 111 ? CYS A 319 VAL A 322 AA1 3 LYS A 59 ? VAL A 65 ? LYS A 270 VAL A 276 AA1 4 LYS A 47 ? ILE A 50 ? LYS A 258 ILE A 261 AA1 5 CYS A 125 ? ILE A 127 ? CYS A 336 ILE A 338 AA2 1 THR A 74 ? PRO A 76 ? THR A 285 PRO A 287 AA2 2 GLU A 86 ? THR A 88 ? GLU A 297 THR A 299 AA3 1 ALA B 4 ? PHE B 5 ? ALA B 215 PHE B 216 AA3 2 ARG B 132 ? CYS B 133 ? ARG B 343 CYS B 344 AA4 1 THR B 118 ? PRO B 121 ? THR B 329 PRO B 332 AA4 2 CYS B 108 ? VAL B 111 ? CYS B 319 VAL B 322 AA4 3 LYS B 59 ? VAL B 65 ? LYS B 270 VAL B 276 AA4 4 LYS B 47 ? ILE B 50 ? LYS B 258 ILE B 261 AA4 5 CYS B 125 ? ILE B 127 ? CYS B 336 ILE B 338 AA5 1 THR B 74 ? LEU B 77 ? THR B 285 LEU B 288 AA5 2 VAL B 85 ? THR B 88 ? VAL B 296 THR B 299 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 120 ? O LEU A 331 N LEU A 109 ? N LEU A 320 AA1 2 3 O GLN A 110 ? O GLN A 321 N ASN A 64 ? N ASN A 275 AA1 3 4 O TYR A 60 ? O TYR A 271 N VAL A 48 ? N VAL A 259 AA1 4 5 N GLU A 49 ? N GLU A 260 O ASN A 126 ? O ASN A 337 AA2 1 2 N PHE A 75 ? N PHE A 286 O CYS A 87 ? O CYS A 298 AA3 1 2 N ALA B 4 ? N ALA B 215 O CYS B 133 ? O CYS B 344 AA4 1 2 O LEU B 120 ? O LEU B 331 N LEU B 109 ? N LEU B 320 AA4 2 3 O GLN B 110 ? O GLN B 321 N CYS B 63 ? N CYS B 274 AA4 3 4 O TYR B 60 ? O TYR B 271 N VAL B 48 ? N VAL B 259 AA4 4 5 N GLU B 49 ? N GLU B 260 O ASN B 126 ? O ASN B 337 AA5 1 2 N LEU B 77 ? N LEU B 288 O VAL B 85 ? O VAL B 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software L GOL 501 ? 8 'binding site for residue GOL L 501' AC2 Software M GOL 501 ? 6 'binding site for residue GOL M 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 59 ? LYS A 270 . ? 1_555 ? 2 AC1 8 HOH G . ? HOH A 403 . ? 1_555 ? 3 AC1 8 HOH G . ? HOH A 416 . ? 1_555 ? 4 AC1 8 U C 3 ? U L 403 . ? 1_555 ? 5 AC1 8 HOH I . ? HOH L 603 . ? 1_555 ? 6 AC1 8 HOH I . ? HOH L 606 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH L 613 . ? 1_555 ? 8 AC1 8 HOH J . ? HOH M 610 . ? 1_555 ? 9 AC2 6 LYS B 59 ? LYS B 270 . ? 1_555 ? 10 AC2 6 TYR B 60 ? TYR B 271 . ? 1_555 ? 11 AC2 6 ARG B 61 ? ARG B 272 . ? 1_555 ? 12 AC2 6 G D 4 ? G M 404 . ? 1_555 ? 13 AC2 6 A D 5 ? A M 405 . ? 1_555 ? 14 AC2 6 HOH J . ? HOH M 606 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 287 ? ? -58.37 104.38 2 1 VAL A 296 ? ? -120.12 -163.21 3 1 HIS A 328 ? ? 34.47 55.98 4 1 GLU A 334 ? ? -38.13 -35.59 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id L _pdbx_validate_planes.auth_seq_id 404 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.055 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id M _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 615 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id J _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 212 ? A GLY 1 2 1 Y 1 A GLN 289 ? A GLN 78 3 1 Y 1 A GLN 290 ? A GLN 79 4 1 Y 1 A GLU 291 ? A GLU 80 5 1 Y 1 A SER 292 ? A SER 81 6 1 Y 1 A GLY 293 ? A GLY 82 7 1 Y 1 A GLN 294 ? A GLN 83 8 1 Y 1 A LYS 346 ? A LYS 135 9 1 Y 1 A LYS 347 ? A LYS 136 10 1 Y 1 B GLN 290 ? B GLN 79 11 1 Y 1 B GLU 291 ? B GLU 80 12 1 Y 1 B SER 292 ? B SER 81 13 1 Y 1 B GLY 293 ? B GLY 82 14 1 Y 1 B GLN 294 ? B GLN 83 15 1 Y 1 B LYS 347 ? B LYS 136 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 GOL C1 C N N 247 GOL O1 O N N 248 GOL C2 C N N 249 GOL O2 O N N 250 GOL C3 C N N 251 GOL O3 O N N 252 GOL H11 H N N 253 GOL H12 H N N 254 GOL HO1 H N N 255 GOL H2 H N N 256 GOL HO2 H N N 257 GOL H31 H N N 258 GOL H32 H N N 259 GOL HO3 H N N 260 HIS N N N N 261 HIS CA C N S 262 HIS C C N N 263 HIS O O N N 264 HIS CB C N N 265 HIS CG C Y N 266 HIS ND1 N Y N 267 HIS CD2 C Y N 268 HIS CE1 C Y N 269 HIS NE2 N Y N 270 HIS OXT O N N 271 HIS H H N N 272 HIS H2 H N N 273 HIS HA H N N 274 HIS HB2 H N N 275 HIS HB3 H N N 276 HIS HD1 H N N 277 HIS HD2 H N N 278 HIS HE1 H N N 279 HIS HE2 H N N 280 HIS HXT H N N 281 HOH O O N N 282 HOH H1 H N N 283 HOH H2 H N N 284 ILE N N N N 285 ILE CA C N S 286 ILE C C N N 287 ILE O O N N 288 ILE CB C N S 289 ILE CG1 C N N 290 ILE CG2 C N N 291 ILE CD1 C N N 292 ILE OXT O N N 293 ILE H H N N 294 ILE H2 H N N 295 ILE HA H N N 296 ILE HB H N N 297 ILE HG12 H N N 298 ILE HG13 H N N 299 ILE HG21 H N N 300 ILE HG22 H N N 301 ILE HG23 H N N 302 ILE HD11 H N N 303 ILE HD12 H N N 304 ILE HD13 H N N 305 ILE HXT H N N 306 LEU N N N N 307 LEU CA C N S 308 LEU C C N N 309 LEU O O N N 310 LEU CB C N N 311 LEU CG C N N 312 LEU CD1 C N N 313 LEU CD2 C N N 314 LEU OXT O N N 315 LEU H H N N 316 LEU H2 H N N 317 LEU HA H N N 318 LEU HB2 H N N 319 LEU HB3 H N N 320 LEU HG H N N 321 LEU HD11 H N N 322 LEU HD12 H N N 323 LEU HD13 H N N 324 LEU HD21 H N N 325 LEU HD22 H N N 326 LEU HD23 H N N 327 LEU HXT H N N 328 LYS N N N N 329 LYS CA C N S 330 LYS C C N N 331 LYS O O N N 332 LYS CB C N N 333 LYS CG C N N 334 LYS CD C N N 335 LYS CE C N N 336 LYS NZ N N N 337 LYS OXT O N N 338 LYS H H N N 339 LYS H2 H N N 340 LYS HA H N N 341 LYS HB2 H N N 342 LYS HB3 H N N 343 LYS HG2 H N N 344 LYS HG3 H N N 345 LYS HD2 H N N 346 LYS HD3 H N N 347 LYS HE2 H N N 348 LYS HE3 H N N 349 LYS HZ1 H N N 350 LYS HZ2 H N N 351 LYS HZ3 H N N 352 LYS HXT H N N 353 MET N N N N 354 MET CA C N S 355 MET C C N N 356 MET O O N N 357 MET CB C N N 358 MET CG C N N 359 MET SD S N N 360 MET CE C N N 361 MET OXT O N N 362 MET H H N N 363 MET H2 H N N 364 MET HA H N N 365 MET HB2 H N N 366 MET HB3 H N N 367 MET HG2 H N N 368 MET HG3 H N N 369 MET HE1 H N N 370 MET HE2 H N N 371 MET HE3 H N N 372 MET HXT H N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TYR N N N N 445 TYR CA C N S 446 TYR C C N N 447 TYR O O N N 448 TYR CB C N N 449 TYR CG C Y N 450 TYR CD1 C Y N 451 TYR CD2 C Y N 452 TYR CE1 C Y N 453 TYR CE2 C Y N 454 TYR CZ C Y N 455 TYR OH O N N 456 TYR OXT O N N 457 TYR H H N N 458 TYR H2 H N N 459 TYR HA H N N 460 TYR HB2 H N N 461 TYR HB3 H N N 462 TYR HD1 H N N 463 TYR HD2 H N N 464 TYR HE1 H N N 465 TYR HE2 H N N 466 TYR HH H N N 467 TYR HXT H N N 468 U OP3 O N N 469 U P P N N 470 U OP1 O N N 471 U OP2 O N N 472 U "O5'" O N N 473 U "C5'" C N N 474 U "C4'" C N R 475 U "O4'" O N N 476 U "C3'" C N S 477 U "O3'" O N N 478 U "C2'" C N R 479 U "O2'" O N N 480 U "C1'" C N R 481 U N1 N N N 482 U C2 C N N 483 U O2 O N N 484 U N3 N N N 485 U C4 C N N 486 U O4 O N N 487 U C5 C N N 488 U C6 C N N 489 U HOP3 H N N 490 U HOP2 H N N 491 U "H5'" H N N 492 U "H5''" H N N 493 U "H4'" H N N 494 U "H3'" H N N 495 U "HO3'" H N N 496 U "H2'" H N N 497 U "HO2'" H N N 498 U "H1'" H N N 499 U H3 H N N 500 U H5 H N N 501 U H6 H N N 502 VAL N N N N 503 VAL CA C N S 504 VAL C C N N 505 VAL O O N N 506 VAL CB C N N 507 VAL CG1 C N N 508 VAL CG2 C N N 509 VAL OXT O N N 510 VAL H H N N 511 VAL H2 H N N 512 VAL HA H N N 513 VAL HB H N N 514 VAL HG11 H N N 515 VAL HG12 H N N 516 VAL HG13 H N N 517 VAL HG21 H N N 518 VAL HG22 H N N 519 VAL HG23 H N N 520 VAL HXT H N N 521 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 GOL C1 O1 sing N N 244 GOL C1 C2 sing N N 245 GOL C1 H11 sing N N 246 GOL C1 H12 sing N N 247 GOL O1 HO1 sing N N 248 GOL C2 O2 sing N N 249 GOL C2 C3 sing N N 250 GOL C2 H2 sing N N 251 GOL O2 HO2 sing N N 252 GOL C3 O3 sing N N 253 GOL C3 H31 sing N N 254 GOL C3 H32 sing N N 255 GOL O3 HO3 sing N N 256 HIS N CA sing N N 257 HIS N H sing N N 258 HIS N H2 sing N N 259 HIS CA C sing N N 260 HIS CA CB sing N N 261 HIS CA HA sing N N 262 HIS C O doub N N 263 HIS C OXT sing N N 264 HIS CB CG sing N N 265 HIS CB HB2 sing N N 266 HIS CB HB3 sing N N 267 HIS CG ND1 sing Y N 268 HIS CG CD2 doub Y N 269 HIS ND1 CE1 doub Y N 270 HIS ND1 HD1 sing N N 271 HIS CD2 NE2 sing Y N 272 HIS CD2 HD2 sing N N 273 HIS CE1 NE2 sing Y N 274 HIS CE1 HE1 sing N N 275 HIS NE2 HE2 sing N N 276 HIS OXT HXT sing N N 277 HOH O H1 sing N N 278 HOH O H2 sing N N 279 ILE N CA sing N N 280 ILE N H sing N N 281 ILE N H2 sing N N 282 ILE CA C sing N N 283 ILE CA CB sing N N 284 ILE CA HA sing N N 285 ILE C O doub N N 286 ILE C OXT sing N N 287 ILE CB CG1 sing N N 288 ILE CB CG2 sing N N 289 ILE CB HB sing N N 290 ILE CG1 CD1 sing N N 291 ILE CG1 HG12 sing N N 292 ILE CG1 HG13 sing N N 293 ILE CG2 HG21 sing N N 294 ILE CG2 HG22 sing N N 295 ILE CG2 HG23 sing N N 296 ILE CD1 HD11 sing N N 297 ILE CD1 HD12 sing N N 298 ILE CD1 HD13 sing N N 299 ILE OXT HXT sing N N 300 LEU N CA sing N N 301 LEU N H sing N N 302 LEU N H2 sing N N 303 LEU CA C sing N N 304 LEU CA CB sing N N 305 LEU CA HA sing N N 306 LEU C O doub N N 307 LEU C OXT sing N N 308 LEU CB CG sing N N 309 LEU CB HB2 sing N N 310 LEU CB HB3 sing N N 311 LEU CG CD1 sing N N 312 LEU CG CD2 sing N N 313 LEU CG HG sing N N 314 LEU CD1 HD11 sing N N 315 LEU CD1 HD12 sing N N 316 LEU CD1 HD13 sing N N 317 LEU CD2 HD21 sing N N 318 LEU CD2 HD22 sing N N 319 LEU CD2 HD23 sing N N 320 LEU OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 MET N CA sing N N 346 MET N H sing N N 347 MET N H2 sing N N 348 MET CA C sing N N 349 MET CA CB sing N N 350 MET CA HA sing N N 351 MET C O doub N N 352 MET C OXT sing N N 353 MET CB CG sing N N 354 MET CB HB2 sing N N 355 MET CB HB3 sing N N 356 MET CG SD sing N N 357 MET CG HG2 sing N N 358 MET CG HG3 sing N N 359 MET SD CE sing N N 360 MET CE HE1 sing N N 361 MET CE HE2 sing N N 362 MET CE HE3 sing N N 363 MET OXT HXT sing N N 364 PHE N CA sing N N 365 PHE N H sing N N 366 PHE N H2 sing N N 367 PHE CA C sing N N 368 PHE CA CB sing N N 369 PHE CA HA sing N N 370 PHE C O doub N N 371 PHE C OXT sing N N 372 PHE CB CG sing N N 373 PHE CB HB2 sing N N 374 PHE CB HB3 sing N N 375 PHE CG CD1 doub Y N 376 PHE CG CD2 sing Y N 377 PHE CD1 CE1 sing Y N 378 PHE CD1 HD1 sing N N 379 PHE CD2 CE2 doub Y N 380 PHE CD2 HD2 sing N N 381 PHE CE1 CZ doub Y N 382 PHE CE1 HE1 sing N N 383 PHE CE2 CZ sing Y N 384 PHE CE2 HE2 sing N N 385 PHE CZ HZ sing N N 386 PHE OXT HXT sing N N 387 PRO N CA sing N N 388 PRO N CD sing N N 389 PRO N H sing N N 390 PRO CA C sing N N 391 PRO CA CB sing N N 392 PRO CA HA sing N N 393 PRO C O doub N N 394 PRO C OXT sing N N 395 PRO CB CG sing N N 396 PRO CB HB2 sing N N 397 PRO CB HB3 sing N N 398 PRO CG CD sing N N 399 PRO CG HG2 sing N N 400 PRO CG HG3 sing N N 401 PRO CD HD2 sing N N 402 PRO CD HD3 sing N N 403 PRO OXT HXT sing N N 404 SER N CA sing N N 405 SER N H sing N N 406 SER N H2 sing N N 407 SER CA C sing N N 408 SER CA CB sing N N 409 SER CA HA sing N N 410 SER C O doub N N 411 SER C OXT sing N N 412 SER CB OG sing N N 413 SER CB HB2 sing N N 414 SER CB HB3 sing N N 415 SER OG HG sing N N 416 SER OXT HXT sing N N 417 THR N CA sing N N 418 THR N H sing N N 419 THR N H2 sing N N 420 THR CA C sing N N 421 THR CA CB sing N N 422 THR CA HA sing N N 423 THR C O doub N N 424 THR C OXT sing N N 425 THR CB OG1 sing N N 426 THR CB CG2 sing N N 427 THR CB HB sing N N 428 THR OG1 HG1 sing N N 429 THR CG2 HG21 sing N N 430 THR CG2 HG22 sing N N 431 THR CG2 HG23 sing N N 432 THR OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 U OP3 P sing N N 458 U OP3 HOP3 sing N N 459 U P OP1 doub N N 460 U P OP2 sing N N 461 U P "O5'" sing N N 462 U OP2 HOP2 sing N N 463 U "O5'" "C5'" sing N N 464 U "C5'" "C4'" sing N N 465 U "C5'" "H5'" sing N N 466 U "C5'" "H5''" sing N N 467 U "C4'" "O4'" sing N N 468 U "C4'" "C3'" sing N N 469 U "C4'" "H4'" sing N N 470 U "O4'" "C1'" sing N N 471 U "C3'" "O3'" sing N N 472 U "C3'" "C2'" sing N N 473 U "C3'" "H3'" sing N N 474 U "O3'" "HO3'" sing N N 475 U "C2'" "O2'" sing N N 476 U "C2'" "C1'" sing N N 477 U "C2'" "H2'" sing N N 478 U "O2'" "HO2'" sing N N 479 U "C1'" N1 sing N N 480 U "C1'" "H1'" sing N N 481 U N1 C2 sing N N 482 U N1 C6 sing N N 483 U C2 O2 doub N N 484 U C2 N3 sing N N 485 U N3 C4 sing N N 486 U N3 H3 sing N N 487 U C4 O4 doub N N 488 U C4 C5 sing N N 489 U C5 C6 doub N N 490 U C5 H5 sing N N 491 U C6 H6 sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # _ndb_struct_conf_na.entry_id 6RA4 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C C 1 1_555 D U 7 1_555 0.214 0.082 -0.840 -15.723 -8.667 -36.742 1 L_C401:U407_M L 401 ? M 407 ? ? ? 1 C G 2 1_555 D C 6 1_555 -0.099 -0.127 0.254 -7.570 -13.421 -0.980 2 L_G402:C406_M L 402 ? M 406 ? 19 1 1 C U 3 1_555 D A 5 1_555 0.152 -0.110 0.375 6.632 -10.205 4.184 3 L_U403:A405_M L 403 ? M 405 ? 20 1 1 C G 4 1_555 D G 4 1_555 -1.658 -3.470 -0.592 28.750 1.341 84.655 4 L_G404:G404_M L 404 ? M 404 ? 6 3 1 C A 5 1_555 D U 3 1_555 0.021 -0.062 -0.098 0.015 -7.520 0.671 5 L_A405:U403_M L 405 ? M 403 ? 20 1 1 C C 6 1_555 D G 2 1_555 0.481 -0.180 -0.245 7.839 3.300 2.773 6 L_C406:G402_M L 406 ? M 402 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C C 1 1_555 D U 7 1_555 C G 2 1_555 D C 6 1_555 1.716 -1.320 3.155 -4.889 14.526 27.234 -4.745 -3.964 1.897 28.194 9.489 31.179 1 LL_C401G402:C406U407_MM L 401 ? M 407 ? L 402 ? M 406 ? 1 C G 2 1_555 D C 6 1_555 C U 3 1_555 D A 5 1_555 0.888 -1.025 3.055 -0.498 3.976 32.279 -2.465 -1.666 2.897 7.116 0.892 32.520 2 LL_G402U403:A405C406_MM L 402 ? M 406 ? L 403 ? M 405 ? 1 C U 3 1_555 D A 5 1_555 C G 4 1_555 D G 4 1_555 -0.184 -3.326 -0.707 -171.493 35.082 156.828 -1.648 0.166 -0.791 17.551 85.796 179.005 3 LL_U403G404:G404A405_MM L 403 ? M 405 ? L 404 ? M 404 ? 1 C G 4 1_555 D G 4 1_555 C A 5 1_555 D U 3 1_555 -0.129 -3.457 -2.606 123.317 -101.347 97.789 -2.121 -0.398 -0.612 -52.246 -63.572 166.641 4 LL_G404A405:U403G404_MM L 404 ? M 404 ? L 405 ? M 403 ? 1 C A 5 1_555 D U 3 1_555 C C 6 1_555 D G 2 1_555 0.211 -1.912 3.220 0.732 4.984 32.604 -4.166 -0.254 2.907 8.813 -1.295 32.981 5 LL_A405C406:G402U403_MM L 405 ? M 403 ? L 406 ? M 402 ? # _atom_sites.entry_id 6RA4 _atom_sites.fract_transf_matrix[1][1] 0.013771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011406 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017596 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_