HEADER REPLICATION 09-APR-19 6RB4 TITLE CRYSTAL STRUCTURE OF THE PRI1 SUBUNIT OF HUMAN PRIMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA PRIMASE 49 KDA SUBUNIT,P49; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS PRIMASE, DNA-DEPENDENT RNA POLYMERASE, ATP, PRIMING, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.L.KILKENNY,L.PELLEGRINI REVDAT 3 24-JAN-24 6RB4 1 REMARK REVDAT 2 02-OCT-19 6RB4 1 JRNL REVDAT 1 11-SEP-19 6RB4 0 JRNL AUTH S.HOLZER,N.J.RZECHORZEK,I.R.SHORT,M.JENKYN-BEDFORD, JRNL AUTH 2 L.PELLEGRINI,M.L.KILKENNY JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF HUMAN PRIMASE BY JRNL TITL 2 ARABINOFURANOSYL NUCLEOSIDE ANALOGUES FLUDARABINE AND JRNL TITL 3 VIDARABINE. JRNL REF ACS CHEM.BIOL. V. 14 1904 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 31479243 JRNL DOI 10.1021/ACSCHEMBIO.9B00367 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5175 - 4.4985 1.00 2914 149 0.1781 0.1575 REMARK 3 2 4.4985 - 3.5711 1.00 2740 145 0.1445 0.1615 REMARK 3 3 3.5711 - 3.1198 1.00 2718 152 0.1673 0.1983 REMARK 3 4 3.1198 - 2.8346 1.00 2686 144 0.1745 0.2029 REMARK 3 5 2.8346 - 2.6315 1.00 2669 143 0.1769 0.2170 REMARK 3 6 2.6315 - 2.4763 1.00 2617 166 0.1772 0.2047 REMARK 3 7 2.4763 - 2.3523 1.00 2679 139 0.1834 0.2003 REMARK 3 8 2.3523 - 2.2499 1.00 2629 143 0.1838 0.2047 REMARK 3 9 2.2499 - 2.1633 1.00 2658 127 0.1972 0.2457 REMARK 3 10 2.1633 - 2.0887 1.00 2642 138 0.1990 0.2383 REMARK 3 11 2.0887 - 2.0234 1.00 2622 135 0.2015 0.2360 REMARK 3 12 2.0234 - 1.9655 1.00 2624 136 0.2151 0.2567 REMARK 3 13 1.9655 - 1.9138 1.00 2612 150 0.2326 0.2597 REMARK 3 14 1.9138 - 1.8671 1.00 2620 137 0.2333 0.2979 REMARK 3 15 1.8671 - 1.8246 1.00 2632 139 0.2452 0.2534 REMARK 3 16 1.8246 - 1.7858 1.00 2603 143 0.2384 0.2975 REMARK 3 17 1.7858 - 1.7501 1.00 2623 123 0.2467 0.2488 REMARK 3 18 1.7501 - 1.7171 1.00 2611 155 0.2594 0.2851 REMARK 3 19 1.7171 - 1.6864 1.00 2611 135 0.2590 0.3211 REMARK 3 20 1.6864 - 1.6578 1.00 2624 134 0.2711 0.2805 REMARK 3 21 1.6578 - 1.6311 1.00 2596 137 0.2721 0.2749 REMARK 3 22 1.6311 - 1.6060 1.00 2598 143 0.2841 0.3526 REMARK 3 23 1.6060 - 1.5824 1.00 2606 151 0.2884 0.2942 REMARK 3 24 1.5824 - 1.5601 1.00 2617 118 0.3126 0.3262 REMARK 3 25 1.5601 - 1.5390 1.00 2604 120 0.3285 0.3959 REMARK 3 26 1.5390 - 1.5190 1.00 2592 131 0.3648 0.3724 REMARK 3 27 1.5190 - 1.5000 0.98 2558 152 0.3717 0.4178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3485 REMARK 3 ANGLE : 0.844 4717 REMARK 3 CHIRALITY : 0.055 492 REMARK 3 PLANARITY : 0.007 608 REMARK 3 DIHEDRAL : 12.962 2111 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980110 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54330 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4BPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS TRIS PROPANE PH 6.5, 24 % REMARK 280 PEG 3350, 150 MM NAF, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.16750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.32950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.25125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.32950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.08375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.32950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.32950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.25125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.32950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.32950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.08375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.16750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 360 REMARK 465 SER A 361 REMARK 465 THR A 362 REMARK 465 ASN A 363 REMARK 465 GLU A 364 REMARK 465 GLU A 365 REMARK 465 GLU A 366 REMARK 465 LYS A 367 REMARK 465 GLU A 368 REMARK 465 GLU A 369 REMARK 465 ASN A 370 REMARK 465 GLU A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 SER A 374 REMARK 465 ASP A 375 REMARK 465 VAL A 376 REMARK 465 LYS A 377 REMARK 465 HIS A 378 REMARK 465 ARG A 379 REMARK 465 THR A 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 337 O HOH A 612 1.48 REMARK 500 HE22 GLN A 58 O HOH A 615 1.52 REMARK 500 HH11 ARG A 19 O HOH A 605 1.53 REMARK 500 HZ1 LYS A 95 O HOH A 608 1.53 REMARK 500 OD1 ASN A 61 HH12 ARG A 87 1.58 REMARK 500 O HOH A 859 O HOH A 974 1.78 REMARK 500 O HOH A 941 O HOH A 954 1.84 REMARK 500 O HOH A 945 O HOH A 1025 1.87 REMARK 500 O HOH A 815 O HOH A 1032 1.90 REMARK 500 O LYS A 407 O HOH A 601 1.92 REMARK 500 O HOH A 902 O HOH A 984 1.95 REMARK 500 O ALA A 359 O HOH A 602 1.99 REMARK 500 O HOH A 774 O HOH A 1012 1.99 REMARK 500 O HOH A 629 O HOH A 831 2.01 REMARK 500 O HOH A 940 O HOH A 971 2.03 REMARK 500 OD2 ASP A 403 O HOH A 603 2.03 REMARK 500 O HOH A 840 O HOH A 860 2.05 REMARK 500 OE1 GLU A 2 O HOH A 604 2.06 REMARK 500 NH1 ARG A 19 O HOH A 605 2.07 REMARK 500 O HOH A 911 O HOH A 1014 2.07 REMARK 500 O HOH A 828 O HOH A 970 2.07 REMARK 500 OD2 ASP A 117 O HOH A 606 2.08 REMARK 500 O HOH A 824 O HOH A 879 2.09 REMARK 500 O HOH A 739 O HOH A 950 2.10 REMARK 500 O HOH A 692 O HOH A 852 2.15 REMARK 500 O HOH A 938 O HOH A 987 2.16 REMARK 500 O HOH A 984 O HOH A 1033 2.17 REMARK 500 O HOH A 795 O HOH A 939 2.18 REMARK 500 OD2 ASP A 117 O HOH A 607 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 49 -163.78 -102.93 REMARK 500 LYS A 104 148.43 -171.05 REMARK 500 ARG A 162 -85.09 -147.65 REMARK 500 VAL A 229 -63.18 -95.73 REMARK 500 LYS A 284 -80.09 -61.74 REMARK 500 SER A 331 80.10 -66.66 REMARK 500 ASP A 358 73.71 -119.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1065 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 CYS A 122 SG 116.4 REMARK 620 3 CYS A 128 SG 106.8 101.0 REMARK 620 4 CYS A 131 SG 106.1 112.7 113.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R4S RELATED DB: PDB REMARK 900 RELATED ID: 6R5D RELATED DB: PDB REMARK 900 RELATED ID: 6R5E RELATED DB: PDB REMARK 900 RELATED ID: 6R4T RELATED DB: PDB REMARK 900 RELATED ID: 6R4U RELATED DB: PDB DBREF 6RB4 A 1 407 UNP P49642 PRI1_HUMAN 1 407 SEQADV 6RB4 GLY A -2 UNP P49642 EXPRESSION TAG SEQADV 6RB4 THR A -1 UNP P49642 EXPRESSION TAG SEQADV 6RB4 SER A 0 UNP P49642 EXPRESSION TAG SEQRES 1 A 410 GLY THR SER MET GLU THR PHE ASP PRO THR GLU LEU PRO SEQRES 2 A 410 GLU LEU LEU LYS LEU TYR TYR ARG ARG LEU PHE PRO TYR SEQRES 3 A 410 SER GLN TYR TYR ARG TRP LEU ASN TYR GLY GLY VAL ILE SEQRES 4 A 410 LYS ASN TYR PHE GLN HIS ARG GLU PHE SER PHE THR LEU SEQRES 5 A 410 LYS ASP ASP ILE TYR ILE ARG TYR GLN SER PHE ASN ASN SEQRES 6 A 410 GLN SER ASP LEU GLU LYS GLU MET GLN LYS MET ASN PRO SEQRES 7 A 410 TYR LYS ILE ASP ILE GLY ALA VAL TYR SER HIS ARG PRO SEQRES 8 A 410 ASN GLN HIS ASN THR VAL LYS LEU GLY ALA PHE GLN ALA SEQRES 9 A 410 GLN GLU LYS GLU LEU VAL PHE ASP ILE ASP MET THR ASP SEQRES 10 A 410 TYR ASP ASP VAL ARG ARG CYS CYS SER SER ALA ASP ILE SEQRES 11 A 410 CYS PRO LYS CYS TRP THR LEU MET THR MET ALA ILE ARG SEQRES 12 A 410 ILE ILE ASP ARG ALA LEU LYS GLU ASP PHE GLY PHE LYS SEQRES 13 A 410 HIS ARG LEU TRP VAL TYR SER GLY ARG ARG GLY VAL HIS SEQRES 14 A 410 CYS TRP VAL CYS ASP GLU SER VAL ARG LYS LEU SER SER SEQRES 15 A 410 ALA VAL ARG SER GLY ILE VAL GLU TYR LEU SER LEU VAL SEQRES 16 A 410 LYS GLY GLY GLN ASP VAL LYS LYS LYS VAL HIS LEU SER SEQRES 17 A 410 GLU LYS ILE HIS PRO PHE ILE ARG LYS SER ILE ASN ILE SEQRES 18 A 410 ILE LYS LYS TYR PHE GLU GLU TYR ALA LEU VAL ASN GLN SEQRES 19 A 410 ASP ILE LEU GLU ASN LYS GLU SER TRP ASP LYS ILE LEU SEQRES 20 A 410 ALA LEU VAL PRO GLU THR ILE HIS ASP GLU LEU GLN GLN SEQRES 21 A 410 SER PHE GLN LYS SER HIS ASN SER LEU GLN ARG TRP GLU SEQRES 22 A 410 HIS LEU LYS LYS VAL ALA SER ARG TYR GLN ASN ASN ILE SEQRES 23 A 410 LYS ASN ASP LYS TYR GLY PRO TRP LEU GLU TRP GLU ILE SEQRES 24 A 410 MET LEU GLN TYR CYS PHE PRO ARG LEU ASP ILE ASN VAL SEQRES 25 A 410 SER LYS GLY ILE ASN HIS LEU LEU LYS SER PRO PHE SER SEQRES 26 A 410 VAL HIS PRO LYS THR GLY ARG ILE SER VAL PRO ILE ASP SEQRES 27 A 410 LEU GLN LYS VAL ASP GLN PHE ASP PRO PHE THR VAL PRO SEQRES 28 A 410 THR ILE SER PHE ILE CYS ARG GLU LEU ASP ALA ILE SER SEQRES 29 A 410 THR ASN GLU GLU GLU LYS GLU GLU ASN GLU ALA GLU SER SEQRES 30 A 410 ASP VAL LYS HIS ARG THR ARG ASP TYR LYS LYS THR SER SEQRES 31 A 410 LEU ALA PRO TYR VAL LYS VAL PHE GLU HIS PHE LEU GLU SEQRES 32 A 410 ASN LEU ASP LYS SER ARG LYS HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 10 HET EDO A 504 10 HET ZN A 505 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *465(H2 O) HELIX 1 AA1 ASP A 5 THR A 7 5 3 HELIX 2 AA2 GLU A 8 LEU A 20 1 13 HELIX 3 AA3 PRO A 22 TYR A 32 1 11 HELIX 4 AA4 GLY A 33 VAL A 35 5 3 HELIX 5 AA5 LYS A 50 ASP A 52 5 3 HELIX 6 AA6 ASN A 62 ASN A 74 1 13 HELIX 7 AA7 ARG A 87 VAL A 94 5 8 HELIX 8 AA8 THR A 113 ARG A 119 5 7 HELIX 9 AA9 CYS A 131 ASP A 149 1 19 HELIX 10 AB1 ASP A 171 LYS A 176 1 6 HELIX 11 AB2 SER A 178 SER A 190 1 13 HELIX 12 AB3 HIS A 209 LEU A 228 1 20 HELIX 13 AB4 ASN A 236 ALA A 245 1 10 HELIX 14 AB5 LEU A 246 VAL A 247 5 2 HELIX 15 AB6 PRO A 248 THR A 250 5 3 HELIX 16 AB7 ILE A 251 SER A 262 1 12 HELIX 17 AB8 ASN A 264 ARG A 278 1 15 HELIX 18 AB9 PRO A 290 PHE A 302 1 13 HELIX 19 AC1 ASP A 306 GLY A 312 1 7 HELIX 20 AC2 ASP A 335 PHE A 342 5 8 HELIX 21 AC3 ASP A 343 VAL A 347 5 5 HELIX 22 AC4 THR A 349 ASP A 358 1 10 HELIX 23 AC5 ASP A 382 THR A 386 5 5 HELIX 24 AC6 LEU A 388 SER A 405 1 18 SHEET 1 AA1 4 TYR A 54 GLN A 58 0 SHEET 2 AA1 4 ARG A 43 THR A 48 -1 N PHE A 45 O GLN A 58 SHEET 3 AA1 4 LYS A 77 TYR A 84 -1 O GLY A 81 N GLU A 44 SHEET 4 AA1 4 ALA A 101 GLU A 103 -1 O GLU A 103 N VAL A 83 SHEET 1 AA2 4 TYR A 54 GLN A 58 0 SHEET 2 AA2 4 ARG A 43 THR A 48 -1 N PHE A 45 O GLN A 58 SHEET 3 AA2 4 LYS A 77 TYR A 84 -1 O GLY A 81 N GLU A 44 SHEET 4 AA2 4 LEU A 317 LYS A 318 -1 O LEU A 317 N ILE A 80 SHEET 1 AA3 3 LEU A 106 ASP A 111 0 SHEET 2 AA3 3 GLY A 164 VAL A 169 -1 O VAL A 169 N LEU A 106 SHEET 3 AA3 3 ARG A 155 TYR A 159 -1 N VAL A 158 O HIS A 166 LINK SG CYS A 121 ZN ZN A 505 1555 1555 2.33 LINK SG CYS A 122 ZN ZN A 505 1555 1555 2.33 LINK SG CYS A 128 ZN ZN A 505 1555 1555 2.37 LINK SG CYS A 131 ZN ZN A 505 1555 1555 2.26 SITE 1 AC1 7 PHE A 150 PHE A 152 SER A 173 ARG A 329 SITE 2 AC1 7 HOH A 633 HOH A 657 HOH A 728 SITE 1 AC2 5 LYS A 153 HIS A 154 ARG A 155 ASN A 401 SITE 2 AC2 5 HOH A 762 SITE 1 AC3 5 PHE A 150 PHE A 345 HOH A 633 HOH A 698 SITE 2 AC3 5 HOH A 732 SITE 1 AC4 5 GLU A 206 ASN A 281 ASN A 282 ASN A 285 SITE 2 AC4 5 HOH A 650 SITE 1 AC5 4 CYS A 121 CYS A 122 CYS A 128 CYS A 131 CRYST1 78.659 78.659 148.335 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006741 0.00000