HEADER TRANSCRIPTION 11-APR-19 6RBM TITLE TETR(D) E147A MUTANT IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: STOP CODON AT 209, C-TERMINUS TRUNCATED TO IMPROVE COMPND 7 CRYSTALLISATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TETR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PWH1950 KEYWDS TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.HINRICHS,G.J.PALM,L.BERNDT,B.GIRBARDT REVDAT 3 24-JAN-24 6RBM 1 COMPND HETNAM LINK REVDAT 2 18-MAR-20 6RBM 1 JRNL REVDAT 1 21-AUG-19 6RBM 0 JRNL AUTH G.J.PALM,I.BUCHHOLZ,S.WERTEN,B.GIRBARDT,L.BERNDT,M.DELCEA, JRNL AUTH 2 W.HINRICHS JRNL TITL THERMODYNAMICS, COOPERATIVITY AND STABILITY OF THE JRNL TITL 2 TETRACYCLINE REPRESSOR (TETR) UPON TETRACYCLINE BINDING. JRNL REF BIOCHIM BIOPHYS ACTA V.1868 40404 2020 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 32114262 JRNL DOI 10.1016/J.BBAPAP.2020.140404 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS REMARK 1 TITL MODULAR ORGANISATION OF INDUCER RECOGNITION AND ALLOSTERY IN REMARK 1 TITL 2 THE TETRACYCLINE REPRESSOR. REMARK 1 REF FEBS J. V. 283 2102 2016 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 27028290 REMARK 1 DOI 10.1111/FEBS.13723 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 12379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -2.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1693 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1577 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2306 ; 1.840 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3633 ; 1.382 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 7.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;34.567 ;21.383 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;17.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1924 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 363 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 832 ; 2.872 ; 3.663 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 831 ; 2.872 ; 3.663 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1040 ; 4.414 ; 5.488 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1041 ; 4.412 ; 5.487 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 861 ; 2.870 ; 3.850 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 862 ; 2.869 ; 3.852 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1267 ; 4.453 ; 5.727 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1982 ; 6.912 ;43.955 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1975 ; 6.911 ;43.908 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9430 28.2893 13.1569 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2239 REMARK 3 T33: 0.0947 T12: -0.0216 REMARK 3 T13: -0.0752 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 3.1610 L22: 0.1215 REMARK 3 L33: 4.0287 L12: -0.5504 REMARK 3 L13: 2.4320 L23: -0.6267 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: 0.2018 S13: 0.0551 REMARK 3 S21: 0.0151 S22: 0.0182 S23: -0.0284 REMARK 3 S31: 0.2376 S32: -0.0143 S33: 0.0818 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 156 REMARK 3 RESIDUE RANGE : A 182 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8928 32.1360 39.3404 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.2736 REMARK 3 T33: 0.0982 T12: 0.2887 REMARK 3 T13: -0.0295 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.7055 L22: 0.9530 REMARK 3 L33: 0.9548 L12: 0.8186 REMARK 3 L13: 0.2840 L23: 0.3798 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: 0.0760 S13: 0.1265 REMARK 3 S21: 0.0875 S22: 0.1027 S23: 0.1317 REMARK 3 S31: 0.1286 S32: -0.0302 S33: -0.1852 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5657 20.5648 35.9248 REMARK 3 T TENSOR REMARK 3 T11: 0.4999 T22: 0.2383 REMARK 3 T33: 0.1699 T12: 0.3008 REMARK 3 T13: 0.1555 T23: 0.1266 REMARK 3 L TENSOR REMARK 3 L11: 11.7505 L22: 1.5626 REMARK 3 L33: 0.7341 L12: 4.2821 REMARK 3 L13: -2.6735 L23: -0.9869 REMARK 3 S TENSOR REMARK 3 S11: -0.2804 S12: 0.5767 S13: 0.4708 REMARK 3 S21: -0.1438 S22: 0.2404 S23: 0.1622 REMARK 3 S31: 0.3188 S32: 0.0262 S33: 0.0399 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 63.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.15 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FPL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 0.5M (NH4)2SO4, 0.68M REMARK 280 LI2SO4, 0.1M NA-CITRATE, PROTEIN: 0.1ML PROTEIN, 0.1ML 2MM REMARK 280 MINOTC, 0.0005ML 3M MGCL2, 100 MM NACL, 50 MM TRIS PH 8.0, RATIO REMARK 280 2/2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 33.83500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.37000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.68500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.83500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.05500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.05500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.83500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.68500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 33.83500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.37000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 33.83500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.37000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 33.83500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 134.05500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.68500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 33.83500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.68500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 134.05500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 33.83500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 33.83500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.67000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 67.67000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 156 OG1 CG2 REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 402 O HOH A 458 1.98 REMARK 500 OE1 GLU A 58 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 66.88 -101.57 REMARK 500 ARG A 158 139.34 169.52 REMARK 500 ASP A 163 -41.76 149.42 REMARK 500 GLU A 164 48.70 -65.29 REMARK 500 ASN A 165 -26.72 179.94 REMARK 500 ASP A 178 67.19 -101.99 REMARK 500 ASP A 178 67.19 -102.71 REMARK 500 LEU A 204 -112.86 61.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MIY A 301 O6 REMARK 620 2 MIY A 301 O5 82.2 REMARK 620 3 HOH A 412 O 167.0 86.2 REMARK 620 4 HOH A 432 O 104.0 83.8 80.4 REMARK 620 5 HOH A 440 O 81.3 79.8 90.9 161.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MIY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FPL RELATED DB: PDB REMARK 900 SAME PROTEIN REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 900 WILDTYPE PROTEIN DBREF 6RBM A 2 208 UNP P0ACT4 TETR4_ECOLX 2 208 SEQADV 6RBM SER A 2 UNP P0ACT4 ALA 2 ENGINEERED MUTATION SEQADV 6RBM ALA A 147 UNP P0ACT4 GLU 147 ENGINEERED MUTATION SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ASN ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU ALA GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET MIY A 301 33 HET MG A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HETNAM MIY (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A- HETNAM 2 MIY TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A- HETNAM 3 MIY OCTAHYDROTETRACENE-2- CARBOXAMIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN MIY MINOCYCLINE FORMUL 2 MIY C23 H27 N3 O7 FORMUL 3 MG MG 2+ FORMUL 4 CL 6(CL 1-) FORMUL 10 HOH *61(H2 O) HELIX 1 AA1 ASN A 5 GLY A 21 1 17 HELIX 2 AA2 THR A 26 GLY A 35 1 10 HELIX 3 AA3 GLU A 37 VAL A 45 1 9 HELIX 4 AA4 ASN A 47 HIS A 64 1 18 HELIX 5 AA5 SER A 74 ARG A 92 1 19 HELIX 6 AA6 ASP A 95 LEU A 101 1 7 HELIX 7 AA7 ASP A 106 LYS A 108 5 3 HELIX 8 AA8 GLN A 109 GLU A 122 1 14 HELIX 9 AA9 SER A 126 ARG A 158 1 33 HELIX 10 AB1 PRO A 167 ASP A 178 1 12 HELIX 11 AB2 GLY A 182 LEU A 204 1 23 LINK O6 MIY A 301 MG MG A 302 1555 1555 1.92 LINK O5 MIY A 301 MG MG A 302 1555 1555 2.08 LINK MG MG A 302 O HOH A 412 1555 1555 2.00 LINK MG MG A 302 O HOH A 432 1555 1555 2.14 LINK MG MG A 302 O HOH A 440 1555 1555 2.47 SITE 1 AC1 19 HIS A 64 SER A 67 ASN A 82 PHE A 86 SITE 2 AC1 19 HIS A 100 ARG A 104 THR A 112 VAL A 113 SITE 3 AC1 19 GLN A 116 LEU A 131 SER A 138 LEU A 170 SITE 4 AC1 19 LEU A 174 MET A 177 MG A 302 HOH A 412 SITE 5 AC1 19 HOH A 432 HOH A 434 HOH A 440 SITE 1 AC2 5 HIS A 100 MIY A 301 HOH A 412 HOH A 432 SITE 2 AC2 5 HOH A 440 SITE 1 AC3 2 GLY A 102 HOH A 412 SITE 1 AC4 4 ARG A 3 LEU A 4 GLN A 76 ARG A 80 SITE 1 AC5 2 ASN A 5 GLU A 7 SITE 1 AC6 2 THR A 27 HOH A 459 SITE 1 AC7 4 SER A 2 ARG A 3 SER A 74 SER A 77 SITE 1 AC8 3 THR A 26 ARG A 28 LYS A 29 CRYST1 67.670 67.670 178.740 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005595 0.00000