HEADER TRANSFERASE 11-APR-19 6RBP TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEXE WITH AN ADENINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRAMERIC NAD KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE REVDAT 3 15-MAY-24 6RBP 1 REMARK REVDAT 2 25-MAR-20 6RBP 1 JRNL REVDAT 1 19-FEB-20 6RBP 0 JRNL AUTH M.GELIN,J.PAOLETTI,M.A.NAHORI,V.HUTEAU,C.LESEIGNEUR, JRNL AUTH 2 G.JOUVION,L.DUGUE,D.CLEMENT,J.L.PONS,L.ASSAIRI,S.POCHET, JRNL AUTH 3 G.LABESSE,O.DUSSURGET JRNL TITL FROM SUBSTRATE TO FRAGMENTS TO INHIBITOR ACTIVEIN JRNL TITL 2 VIVOAGAINSTSTAPHYLOCOCCUS AUREUS. JRNL REF ACS INFECT DIS. V. 6 422 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32017533 JRNL DOI 10.1021/ACSINFECDIS.9B00368 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.1 REMARK 3 NUMBER OF REFLECTIONS : 7679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.2521 - 4.2291 0.99 1935 214 0.1954 0.2187 REMARK 3 2 4.2291 - 3.3568 1.00 1858 207 0.1855 0.1889 REMARK 3 3 3.3568 - 2.9325 0.91 1688 187 0.2593 0.3093 REMARK 3 4 2.9325 - 2.6644 0.59 1089 121 0.2884 0.3664 REMARK 3 5 2.6644 - 2.4734 0.19 342 38 0.3129 0.3910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7945 24.5516 22.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.4956 T22: 0.5172 REMARK 3 T33: 0.3892 T12: 0.1151 REMARK 3 T13: 0.0521 T23: -0.1329 REMARK 3 L TENSOR REMARK 3 L11: 3.3079 L22: 1.1990 REMARK 3 L33: 5.1034 L12: 0.4280 REMARK 3 L13: -1.3846 L23: 0.1957 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: -0.4674 S13: 0.3326 REMARK 3 S21: 0.0231 S22: -0.3102 S23: 0.0833 REMARK 3 S31: -0.5731 S32: -0.2958 S33: 0.0594 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5373 21.2990 26.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.8987 REMARK 3 T33: 0.5207 T12: 0.1228 REMARK 3 T13: 0.1137 T23: -0.1718 REMARK 3 L TENSOR REMARK 3 L11: 3.0607 L22: 1.7682 REMARK 3 L33: 5.0173 L12: 1.9326 REMARK 3 L13: -0.1536 L23: 1.0624 REMARK 3 S TENSOR REMARK 3 S11: -0.4637 S12: -1.0465 S13: 0.0251 REMARK 3 S21: 0.1122 S22: 0.6901 S23: -0.0373 REMARK 3 S31: -0.4917 S32: 0.7674 S33: -0.0654 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8316 18.1452 -1.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.3092 REMARK 3 T33: 0.3014 T12: -0.0320 REMARK 3 T13: 0.0364 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.2253 L22: 1.9331 REMARK 3 L33: 4.8184 L12: -1.5458 REMARK 3 L13: -1.5697 L23: 1.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: 0.0079 S13: 0.3177 REMARK 3 S21: -0.0094 S22: -0.0855 S23: 0.3639 REMARK 3 S31: -0.5982 S32: -0.4782 S33: -0.0368 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1659 11.5801 -2.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.2707 REMARK 3 T33: 0.1819 T12: 0.0508 REMARK 3 T13: 0.0079 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.7593 L22: 1.8312 REMARK 3 L33: 2.2004 L12: -0.3928 REMARK 3 L13: -0.1151 L23: -0.3953 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: 0.2292 S13: 0.2615 REMARK 3 S21: -0.1813 S22: -0.1468 S23: 0.1875 REMARK 3 S31: -0.1179 S32: -0.1333 S33: 0.0523 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3753 9.7833 -10.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.2655 REMARK 3 T33: 0.1855 T12: 0.0254 REMARK 3 T13: -0.0401 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 2.5489 L22: 2.3334 REMARK 3 L33: 2.2649 L12: -0.2784 REMARK 3 L13: -0.1972 L23: -1.4482 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.2462 S13: -0.0500 REMARK 3 S21: -0.2326 S22: -0.0520 S23: 0.3916 REMARK 3 S31: -0.0839 S32: -0.2270 S33: 0.1348 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9939 10.4312 -6.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.6515 REMARK 3 T33: 0.5523 T12: 0.1778 REMARK 3 T13: -0.0614 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 1.7495 L22: 1.4644 REMARK 3 L33: 5.3847 L12: -0.1793 REMARK 3 L13: -0.5981 L23: -0.2565 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: 0.3950 S13: 0.0648 REMARK 3 S21: 0.1534 S22: 0.2935 S23: 0.6355 REMARK 3 S31: 0.8502 S32: -1.7150 S33: -0.0927 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4345 24.4657 2.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.4511 T22: 0.4171 REMARK 3 T33: 0.4575 T12: 0.2357 REMARK 3 T13: 0.0865 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.2150 L22: 0.6361 REMARK 3 L33: 3.1823 L12: 0.3445 REMARK 3 L13: -0.1721 L23: -1.3427 REMARK 3 S TENSOR REMARK 3 S11: 0.5376 S12: -0.0202 S13: 0.7675 REMARK 3 S21: 0.2348 S22: -0.0095 S23: 0.1592 REMARK 3 S31: -1.0740 S32: -0.1140 S33: -0.1968 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6160 16.2393 19.1055 REMARK 3 T TENSOR REMARK 3 T11: 0.3721 T22: 0.3986 REMARK 3 T33: 0.3212 T12: -0.0078 REMARK 3 T13: -0.0049 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 2.6712 L22: 3.2286 REMARK 3 L33: 7.6141 L12: 0.0876 REMARK 3 L13: -1.1628 L23: 0.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.7796 S13: 0.8043 REMARK 3 S21: 0.3083 S22: 0.0036 S23: -0.2428 REMARK 3 S31: -0.4984 S32: -0.6250 S33: -0.1009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 55.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, PH 5.0, EVAPORATION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.48500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.44000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.48500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.44000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.48500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.48500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.97000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.97000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LYS A 114 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LEU A 90 CG CD1 CD2 REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 ARG A 190 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 63.24 -117.46 REMARK 500 ALA A 91 -73.77 -93.44 REMARK 500 TYR A 95 -153.55 38.09 REMARK 500 TYR A 109 -153.70 -125.26 REMARK 500 ASN A 122 -78.02 -100.05 REMARK 500 ALA A 162 -119.58 -99.86 REMARK 500 ASN A 213 -81.70 -142.14 REMARK 500 ASP A 222 -119.05 53.13 REMARK 500 ILE A 262 -71.18 -94.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 434 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 8.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JYN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 302 DBREF 6RBP A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 6RBP LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBP HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET JYN A 301 17 HET CIT A 302 13 HETNAM JYN 9-(4-AZIDOBUTYL)PURIN-6-AMINE HETNAM CIT CITRIC ACID FORMUL 2 JYN C9 H12 N8 FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *35(H2 O) HELIX 1 AA1 ASP A 10 GLU A 26 1 17 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 ARG A 79 ALA A 81 5 3 HELIX 4 AA4 GLU A 82 GLY A 93 1 12 HELIX 5 AA5 PRO A 157 THR A 161 5 5 HELIX 6 AA6 ALA A 162 LEU A 167 1 6 HELIX 7 AA7 PRO A 252 ILE A 262 1 11 SHEET 1 AA1 3 TYR A 3 SER A 7 0 SHEET 2 AA1 3 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 3 AA1 3 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 AA2 6 ALA A 116 ALA A 120 0 SHEET 2 AA2 6 GLN A 96 LYS A 108 -1 N LEU A 103 O ALA A 120 SHEET 3 AA2 6 GLU A 233 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 6 HIS A 143 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 AA3 6 LEU A 199 PRO A 202 0 SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O SER A 220 N THR A 125 SHEET 6 AA3 6 LEU A 224 SER A 225 -1 O LEU A 224 N VAL A 221 SITE 1 AC1 6 ASP A 45 PHE A 74 TYR A 75 ASN A 122 SITE 2 AC1 6 SER A 158 THR A 161 SITE 1 AC2 9 TYR A 100 HIS A 173 ARG A 247 ARG A 249 SITE 2 AC2 9 PHE A 251 PRO A 252 PHE A 253 ARG A 256 SITE 3 AC2 9 HOH A 409 CRYST1 62.970 74.670 118.880 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008412 0.00000