HEADER TRANSFERASE 11-APR-19 6RBT TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEXE WITH AN ADENINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRAMERIC NAD KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE REVDAT 3 15-MAY-24 6RBT 1 REMARK REVDAT 2 25-MAR-20 6RBT 1 JRNL REVDAT 1 19-FEB-20 6RBT 0 JRNL AUTH M.GELIN,J.PAOLETTI,M.A.NAHORI,V.HUTEAU,C.LESEIGNEUR, JRNL AUTH 2 G.JOUVION,L.DUGUE,D.CLEMENT,J.L.PONS,L.ASSAIRI,S.POCHET, JRNL AUTH 3 G.LABESSE,O.DUSSURGET JRNL TITL FROM SUBSTRATE TO FRAGMENTS TO INHIBITOR ACTIVEIN JRNL TITL 2 VIVOAGAINSTSTAPHYLOCOCCUS AUREUS. JRNL REF ACS INFECT DIS. V. 6 422 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32017533 JRNL DOI 10.1021/ACSINFECDIS.9B00368 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3370 - 3.6774 1.00 3100 150 0.2196 0.2649 REMARK 3 2 3.6774 - 2.9189 0.99 2978 150 0.2806 0.3391 REMARK 3 3 2.9189 - 2.5500 0.99 2960 123 0.3449 0.3896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5745 22.7180 28.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.7562 T22: 1.0384 REMARK 3 T33: 0.7344 T12: 0.1197 REMARK 3 T13: 0.0248 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.1120 L22: 4.1585 REMARK 3 L33: 4.1034 L12: 0.0583 REMARK 3 L13: 0.5296 L23: -0.2101 REMARK 3 S TENSOR REMARK 3 S11: 0.2713 S12: -0.8187 S13: -0.1359 REMARK 3 S21: 0.0932 S22: -0.3321 S23: -0.2503 REMARK 3 S31: -0.4087 S32: -0.1304 S33: 0.0509 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3019 29.8889 22.8742 REMARK 3 T TENSOR REMARK 3 T11: 0.6234 T22: 1.0726 REMARK 3 T33: 0.8439 T12: 0.0631 REMARK 3 T13: 0.1080 T23: -0.1785 REMARK 3 L TENSOR REMARK 3 L11: 5.2566 L22: 1.3068 REMARK 3 L33: 4.3185 L12: 0.0490 REMARK 3 L13: 1.9263 L23: -2.1149 REMARK 3 S TENSOR REMARK 3 S11: -0.2199 S12: -0.5286 S13: 0.6547 REMARK 3 S21: 0.3539 S22: -0.1366 S23: 0.3161 REMARK 3 S31: -0.2187 S32: -0.0421 S33: 0.1749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8422 22.0509 12.4612 REMARK 3 T TENSOR REMARK 3 T11: 0.5177 T22: 0.8812 REMARK 3 T33: 0.6456 T12: 0.0568 REMARK 3 T13: 0.0516 T23: -0.1039 REMARK 3 L TENSOR REMARK 3 L11: 3.8248 L22: 5.9992 REMARK 3 L33: 5.1470 L12: -0.3621 REMARK 3 L13: -1.7424 L23: 1.3494 REMARK 3 S TENSOR REMARK 3 S11: -0.4712 S12: 0.4238 S13: -0.2025 REMARK 3 S21: 0.2597 S22: -0.0453 S23: 0.6017 REMARK 3 S31: 0.4490 S32: -0.7365 S33: 0.2729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6472 20.2294 19.5325 REMARK 3 T TENSOR REMARK 3 T11: 0.7921 T22: 0.9276 REMARK 3 T33: 0.6901 T12: -0.0214 REMARK 3 T13: 0.1170 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 4.6649 L22: 4.6671 REMARK 3 L33: 3.4138 L12: -2.9256 REMARK 3 L13: -2.7973 L23: 3.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.6067 S12: -0.3164 S13: 0.0169 REMARK 3 S21: 0.6237 S22: 0.2752 S23: -0.1836 REMARK 3 S31: -0.0865 S32: -0.2091 S33: 0.4143 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5710 29.0030 23.1884 REMARK 3 T TENSOR REMARK 3 T11: 0.8067 T22: 0.9820 REMARK 3 T33: 0.8881 T12: 0.0165 REMARK 3 T13: 0.1036 T23: -0.1607 REMARK 3 L TENSOR REMARK 3 L11: 3.2099 L22: 2.1983 REMARK 3 L33: 6.7163 L12: -0.1999 REMARK 3 L13: 0.3028 L23: 0.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -1.1401 S13: 0.5884 REMARK 3 S21: 0.8674 S22: 0.2126 S23: -0.4371 REMARK 3 S31: -1.6264 S32: -0.1535 S33: -0.0922 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3389 14.2848 -6.3036 REMARK 3 T TENSOR REMARK 3 T11: 0.6043 T22: 0.8922 REMARK 3 T33: 0.6535 T12: -0.0139 REMARK 3 T13: 0.0106 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 2.8809 L22: 2.9465 REMARK 3 L33: 6.3389 L12: -0.4235 REMARK 3 L13: -0.4961 L23: 1.7399 REMARK 3 S TENSOR REMARK 3 S11: 0.2869 S12: 0.4342 S13: 0.1202 REMARK 3 S21: -0.1546 S22: -0.2318 S23: 0.5298 REMARK 3 S31: 0.0858 S32: -0.2892 S33: 0.0800 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2872 12.0234 -1.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.4673 T22: 0.6673 REMARK 3 T33: 0.5808 T12: 0.0593 REMARK 3 T13: 0.0634 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.7922 L22: 1.5672 REMARK 3 L33: 3.2038 L12: 0.9170 REMARK 3 L13: 1.4173 L23: 0.6012 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.1783 S13: 0.1926 REMARK 3 S21: -0.0409 S22: 0.1531 S23: 0.0520 REMARK 3 S31: -0.2460 S32: -0.3443 S33: -0.3333 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8926 10.0127 -7.9033 REMARK 3 T TENSOR REMARK 3 T11: 0.5444 T22: 0.8240 REMARK 3 T33: 0.6255 T12: 0.0562 REMARK 3 T13: -0.0272 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.5368 L22: 3.0761 REMARK 3 L33: 3.5451 L12: -0.7086 REMARK 3 L13: 0.0464 L23: -1.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.2896 S12: 0.4382 S13: -0.2621 REMARK 3 S21: -0.1264 S22: -0.1821 S23: 0.4244 REMARK 3 S31: 0.3826 S32: -0.7683 S33: -0.1385 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5911 19.5048 10.1856 REMARK 3 T TENSOR REMARK 3 T11: 0.5060 T22: 0.4921 REMARK 3 T33: 0.6394 T12: -0.0301 REMARK 3 T13: 0.1130 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 6.5139 L22: 3.1562 REMARK 3 L33: 6.2626 L12: -1.8094 REMARK 3 L13: 1.4440 L23: 0.2505 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.2412 S13: 0.2939 REMARK 3 S21: 0.0335 S22: -0.0574 S23: -0.0355 REMARK 3 S31: -0.0398 S32: 0.2034 S33: 0.2819 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.98100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, PH 5.0, EVAPORATION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.26050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.08900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.99900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.26050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.08900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.99900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.26050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.08900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.99900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.26050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.08900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.99900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.52100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.52100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 -169.02 -78.70 REMARK 500 ASN A 122 -74.95 -97.81 REMARK 500 ALA A 162 -128.89 -92.93 REMARK 500 ASN A 189 -156.47 -127.99 REMARK 500 ASN A 213 -80.20 -143.73 REMARK 500 ASP A 222 -120.59 57.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JXE A 302 DBREF 6RBT A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 6RBT LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RBT HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CIT A 301 13 HET JXE A 302 16 HETNAM CIT CITRIC ACID HETNAM JXE 8-BROMANYL-9-(4-BROMANYLBUTYL)PURIN-6-AMINE FORMUL 2 CIT C6 H8 O7 FORMUL 3 JXE C9 H11 BR2 N5 FORMUL 4 HOH *4(H2 O) HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 GLY A 44 GLN A 54 1 11 HELIX 3 AA3 TYR A 55 ILE A 62 5 8 HELIX 4 AA4 ARG A 79 ALA A 81 5 3 HELIX 5 AA5 GLU A 82 GLY A 93 1 12 HELIX 6 AA6 PRO A 157 THR A 161 5 5 HELIX 7 AA7 ALA A 162 LEU A 167 1 6 HELIX 8 AA8 PRO A 252 ILE A 262 1 11 SHEET 1 AA1 4 GLU A 30 TYR A 31 0 SHEET 2 AA1 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA1 4 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 4 AA1 4 ALA A 63 HIS A 68 1 O ILE A 67 N GLY A 43 SHEET 1 AA2 6 GLU A 115 ALA A 120 0 SHEET 2 AA2 6 GLN A 96 TYR A 109 -1 N THR A 105 O TYR A 118 SHEET 3 AA2 6 VAL A 231 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N LEU A 209 O ILE A 234 SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 6 ILE A 142 GLY A 149 -1 O PHE A 144 N VAL A 137 SHEET 1 AA3 6 LEU A 199 PRO A 202 0 SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O SER A 220 N THR A 125 SHEET 6 AA3 6 LEU A 224 HIS A 228 -1 O ILE A 226 N ILE A 219 SITE 1 AC1 8 VAL A 98 TYR A 100 HIS A 173 ARG A 247 SITE 2 AC1 8 PHE A 251 PRO A 252 PHE A 253 ARG A 256 SITE 1 AC2 7 GLY A 46 LEU A 49 PHE A 74 ASN A 122 SITE 2 AC2 7 SER A 158 THR A 161 ALA A 162 CRYST1 62.521 76.178 117.998 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008475 0.00000