HEADER TRANSFERASE 11-APR-19 6RC2 TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEXE WITH AN ADENINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRAMERIC NAD KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE REVDAT 3 15-MAY-24 6RC2 1 REMARK REVDAT 2 25-MAR-20 6RC2 1 JRNL REVDAT 1 19-FEB-20 6RC2 0 JRNL AUTH M.GELIN,J.PAOLETTI,M.A.NAHORI,V.HUTEAU,C.LESEIGNEUR, JRNL AUTH 2 G.JOUVION,L.DUGUE,D.CLEMENT,J.L.PONS,L.ASSAIRI,S.POCHET, JRNL AUTH 3 G.LABESSE,O.DUSSURGET JRNL TITL FROM SUBSTRATE TO FRAGMENTS TO INHIBITOR ACTIVEIN JRNL TITL 2 VIVOAGAINSTSTAPHYLOCOCCUS AUREUS. JRNL REF ACS INFECT DIS. V. 6 422 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32017533 JRNL DOI 10.1021/ACSINFECDIS.9B00368 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.2063 - 3.9165 0.98 2537 142 0.1766 0.1950 REMARK 3 2 3.9165 - 3.1087 0.99 2465 138 0.1855 0.1928 REMARK 3 3 3.1087 - 2.7157 0.98 2410 131 0.2363 0.2964 REMARK 3 4 2.7157 - 2.4674 0.98 2387 139 0.2247 0.2530 REMARK 3 5 2.4674 - 2.2905 0.99 2435 121 0.2409 0.2853 REMARK 3 6 2.2905 - 2.1555 0.99 2378 141 0.2840 0.2946 REMARK 3 7 2.1555 - 2.0475 0.99 2418 118 0.2928 0.3265 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9271 24.5528 23.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.4708 T22: 0.5376 REMARK 3 T33: 0.4234 T12: 0.0858 REMARK 3 T13: 0.0427 T23: -0.1141 REMARK 3 L TENSOR REMARK 3 L11: 2.9341 L22: 0.6993 REMARK 3 L33: 4.4725 L12: -0.2355 REMARK 3 L13: -0.3639 L23: 0.2188 REMARK 3 S TENSOR REMARK 3 S11: -0.1058 S12: -0.4354 S13: 0.3167 REMARK 3 S21: 0.1413 S22: -0.0268 S23: 0.1380 REMARK 3 S31: -0.3719 S32: -0.5678 S33: 0.1158 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8362 21.5698 18.0039 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.5053 REMARK 3 T33: 0.4158 T12: 0.0502 REMARK 3 T13: 0.0787 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 3.3526 L22: 3.6848 REMARK 3 L33: 3.5028 L12: -1.6849 REMARK 3 L13: 0.0132 L23: -0.2202 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: -0.2978 S13: -0.0562 REMARK 3 S21: 0.1616 S22: 0.2183 S23: 0.1348 REMARK 3 S31: -0.0261 S32: -0.1842 S33: -0.0183 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6532 16.6648 1.8832 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2925 REMARK 3 T33: 0.2923 T12: 0.0165 REMARK 3 T13: 0.0312 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.2468 L22: 1.9075 REMARK 3 L33: 2.5083 L12: -0.3061 REMARK 3 L13: -0.1346 L23: 0.6214 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: 0.0168 S13: 0.2459 REMARK 3 S21: -0.0174 S22: -0.0102 S23: 0.1956 REMARK 3 S31: -0.2341 S32: -0.2567 S33: -0.0256 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6727 0.9752 -13.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.6348 T22: 0.5457 REMARK 3 T33: 0.3522 T12: 0.0378 REMARK 3 T13: -0.0054 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.2857 L22: 4.9337 REMARK 3 L33: 2.2803 L12: 1.6711 REMARK 3 L13: 0.4470 L23: 0.3370 REMARK 3 S TENSOR REMARK 3 S11: -0.1371 S12: 0.5891 S13: -0.3168 REMARK 3 S21: -0.9789 S22: 0.2993 S23: 0.0328 REMARK 3 S31: 0.4080 S32: 0.0233 S33: -0.0701 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2385 13.2732 -6.4753 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.4300 REMARK 3 T33: 0.4007 T12: 0.0584 REMARK 3 T13: -0.0023 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.8852 L22: 2.6006 REMARK 3 L33: 3.7413 L12: 0.4571 REMARK 3 L13: -0.2124 L23: -0.3884 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: 0.3459 S13: 0.1685 REMARK 3 S21: -0.1127 S22: -0.0380 S23: 0.5385 REMARK 3 S31: 0.1082 S32: -0.8147 S33: -0.0084 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8606 19.6243 10.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.2608 REMARK 3 T33: 0.3404 T12: -0.0158 REMARK 3 T13: 0.0780 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.6830 L22: 2.7794 REMARK 3 L33: 1.7390 L12: -0.9875 REMARK 3 L13: -0.1114 L23: 0.9598 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.3504 S13: 0.4817 REMARK 3 S21: 0.1959 S22: 0.0435 S23: -0.0100 REMARK 3 S31: -0.4427 S32: -0.0477 S33: -0.0570 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.047 REMARK 200 RESOLUTION RANGE LOW (A) : 64.167 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, PH 5.0, EVAPORATION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.21900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.06500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.21100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.21900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.06500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.21100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.21900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.06500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.21100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.21900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.42200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.42200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 56 2.35 -69.83 REMARK 500 GLU A 94 9.05 56.25 REMARK 500 TYR A 109 -165.95 -119.98 REMARK 500 ASN A 122 -72.17 -98.90 REMARK 500 ALA A 162 -125.15 -107.36 REMARK 500 HIS A 204 -7.04 70.50 REMARK 500 ASN A 213 -80.93 -133.52 REMARK 500 ASP A 222 -120.35 58.49 REMARK 500 ILE A 262 -63.43 -100.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JY2 A 302 DBREF 6RC2 A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 6RC2 LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 6RC2 HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CIT A 301 13 HET JY2 A 302 16 HETNAM CIT CITRIC ACID HETNAM JY2 8-METHYL-9-PENT-4-YNYL-PURIN-6-AMINE FORMUL 2 CIT C6 H8 O7 FORMUL 3 JY2 C11 H13 N5 FORMUL 4 HOH *65(H2 O) HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 ARG A 58 GLU A 61 5 4 HELIX 4 AA4 ARG A 79 ALA A 81 5 3 HELIX 5 AA5 GLU A 82 GLY A 93 1 12 HELIX 6 AA6 PRO A 157 THR A 161 5 5 HELIX 7 AA7 ALA A 162 LEU A 167 1 6 HELIX 8 AA8 PRO A 252 ILE A 262 1 11 SHEET 1 AA110 GLU A 30 TYR A 31 0 SHEET 2 AA110 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA110 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 4 AA110 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 5 AA110 VAL A 231 ARG A 247 1 O HIS A 244 N PHE A 64 SHEET 6 AA110 VAL A 207 PRO A 211 -1 N LEU A 209 O ILE A 234 SHEET 7 AA110 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 8 AA110 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 9 AA110 ALA A 178 SER A 186 -1 O THR A 182 N CYS A 153 SHEET 10 AA110 LEU A 199 PRO A 202 -1 O PHE A 201 N MET A 179 SHEET 1 AA2 9 GLU A 115 ALA A 120 0 SHEET 2 AA2 9 GLN A 96 TYR A 109 -1 N VAL A 107 O ALA A 116 SHEET 3 AA2 9 VAL A 231 ARG A 247 -1 O ARG A 247 N GLN A 96 SHEET 4 AA2 9 VAL A 207 PRO A 211 -1 N LEU A 209 O ILE A 234 SHEET 5 AA2 9 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 9 ILE A 142 SER A 155 -1 O GLU A 145 N VAL A 137 SHEET 7 AA2 9 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 8 AA2 9 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 9 AA2 9 LEU A 224 HIS A 228 -1 O LEU A 224 N VAL A 221 SITE 1 AC1 9 TYR A 100 HIS A 173 ARG A 247 PHE A 251 SITE 2 AC1 9 PRO A 252 PHE A 253 ARG A 256 HOH A 411 SITE 3 AC1 9 HOH A 413 SITE 1 AC2 7 ASP A 45 LEU A 49 PHE A 74 TYR A 75 SITE 2 AC2 7 ASN A 122 SER A 158 THR A 161 CRYST1 62.422 76.438 118.130 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008465 0.00000