HEADER CELL ADHESION 11-APR-19 6RCD TITLE OCTAMER C-DOMAIN P140 MYCOPLASMA GENITALIUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGPA ADHESIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA GENITALIUM; SOURCE 3 ORGANISM_TAXID: 2097; SOURCE 4 GENE: MGPB, MG191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DOMAIN-REFOLDING, OCTAMER, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.VIZARRAGA,D.APARICIO,R.PEREZ,R.ILLANES,I.FITA REVDAT 3 24-JAN-24 6RCD 1 REMARK REVDAT 2 18-NOV-20 6RCD 1 TITLE JRNL REVDAT 1 04-NOV-20 6RCD 0 JRNL AUTH D.VIZARRAGA,R.PEREZ-LUQUE,J.MARTIN,I.FITA,D.APARICIO JRNL TITL ALTERNATIVE CONFORMATION OF THE C-DOMAIN OF THE P140 PROTEIN JRNL TITL 2 FROM MYCOPLASMA GENITALIUM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 508 2020 JRNL REFN ESSN 2053-230X JRNL PMID 33135669 JRNL DOI 10.1107/S2053230X20012297 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 67416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3390 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1349 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2226 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1284 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2724 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.82 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 588 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78280 REMARK 3 B22 (A**2) : -5.89720 REMARK 3 B33 (A**2) : 6.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.68930 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.150 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.147 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6553 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8942 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2152 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1106 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6553 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 843 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7663 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -28.9697 16.6297 34.1177 REMARK 3 T TENSOR REMARK 3 T11: -0.0340 T22: -0.0269 REMARK 3 T33: -0.0673 T12: 0.0071 REMARK 3 T13: 0.0292 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.8547 L22: 1.5168 REMARK 3 L33: 1.4318 L12: 0.3262 REMARK 3 L13: 0.0741 L23: 0.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.0659 S13: 0.1493 REMARK 3 S21: 0.0666 S22: 0.0656 S23: 0.0425 REMARK 3 S31: -0.2722 S32: -0.0421 S33: -0.0425 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.0369 -7.8245 8.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: -0.0750 REMARK 3 T33: -0.0220 T12: 0.0053 REMARK 3 T13: -0.0224 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.4941 L22: 1.5639 REMARK 3 L33: 1.4064 L12: 0.9909 REMARK 3 L13: 0.2150 L23: 0.8446 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.0339 S13: -0.1092 REMARK 3 S21: 0.1647 S22: 0.0620 S23: -0.0913 REMARK 3 S31: 0.1772 S32: 0.0612 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.1173 12.1224 17.5563 REMARK 3 T TENSOR REMARK 3 T11: -0.0857 T22: 0.0162 REMARK 3 T33: -0.0678 T12: -0.0888 REMARK 3 T13: 0.0004 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7632 L22: 0.9032 REMARK 3 L33: 2.8971 L12: -0.5280 REMARK 3 L13: -0.1954 L23: -0.9075 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.0504 S13: 0.1134 REMARK 3 S21: 0.0938 S22: -0.0653 S23: -0.0866 REMARK 3 S31: -0.3815 S32: 0.4913 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -7.9624 13.7496 42.8812 REMARK 3 T TENSOR REMARK 3 T11: -0.0055 T22: -0.0055 REMARK 3 T33: -0.0789 T12: -0.0939 REMARK 3 T13: 0.0009 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.3944 L22: 0.5755 REMARK 3 L33: 1.9310 L12: -0.5822 REMARK 3 L13: 0.6706 L23: -0.8162 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: -0.1224 S13: 0.1277 REMARK 3 S21: 0.0747 S22: -0.1084 S23: -0.0450 REMARK 3 S31: -0.1698 S32: 0.2421 S33: 0.0699 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): -32.7380 -5.9589 33.0697 REMARK 3 T TENSOR REMARK 3 T11: -0.0616 T22: -0.0141 REMARK 3 T33: -0.0745 T12: -0.0438 REMARK 3 T13: 0.0058 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.1033 L22: 1.2473 REMARK 3 L33: 1.2926 L12: -0.8734 REMARK 3 L13: -0.1108 L23: -0.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.1150 S13: -0.1181 REMARK 3 S21: 0.0207 S22: -0.1499 S23: 0.1423 REMARK 3 S31: 0.0893 S32: -0.1186 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): -11.8601 -8.8506 43.0320 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: -0.0077 REMARK 3 T33: -0.0530 T12: 0.0172 REMARK 3 T13: -0.0001 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.1822 L22: 0.6907 REMARK 3 L33: 1.2765 L12: 0.3734 REMARK 3 L13: -0.4867 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.1284 S13: -0.2076 REMARK 3 S21: 0.0329 S22: -0.0267 S23: -0.0364 REMARK 3 S31: 0.1462 S32: 0.2011 S33: 0.0944 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { G|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.9659 -10.5053 19.0302 REMARK 3 T TENSOR REMARK 3 T11: -0.0794 T22: -0.0036 REMARK 3 T33: -0.0704 T12: 0.0546 REMARK 3 T13: -0.0049 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.5674 L22: 0.7035 REMARK 3 L33: 1.4814 L12: 0.6850 REMARK 3 L13: -0.3910 L23: -0.0865 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.1569 S13: -0.2409 REMARK 3 S21: -0.0475 S22: -0.1441 S23: -0.1877 REMARK 3 S31: 0.1956 S32: 0.3832 S33: 0.0769 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { X|* } REMARK 3 ORIGIN FOR THE GROUP (A): -19.7260 14.4947 8.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: -0.0924 REMARK 3 T33: -0.0252 T12: 0.0115 REMARK 3 T13: 0.0110 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.4078 L22: 0.6266 REMARK 3 L33: 1.4289 L12: -0.1985 REMARK 3 L13: 0.1016 L23: -0.3162 REMARK 3 S TENSOR REMARK 3 S11: 0.1487 S12: 0.0231 S13: 0.0084 REMARK 3 S21: -0.0555 S22: -0.0918 S23: -0.0215 REMARK 3 S31: 0.0200 S32: -0.0144 S33: -0.0569 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292100124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07216 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 52.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MOLREP REMARK 200 STARTING MODEL: 6RCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DL-MALIC ACID AND BIS-TRIS PROPANE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.25450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.25450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 224 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 115 REMARK 465 SER A 116 REMARK 465 SER A 117 REMARK 465 ASN B 114 REMARK 465 ALA B 115 REMARK 465 SER B 116 REMARK 465 SER B 117 REMARK 465 THR B 118 REMARK 465 ASN C 114 REMARK 465 ALA C 115 REMARK 465 SER C 116 REMARK 465 SER C 117 REMARK 465 ASN D 114 REMARK 465 ALA D 115 REMARK 465 ASN E 114 REMARK 465 ALA E 115 REMARK 465 ALA F 115 REMARK 465 SER F 116 REMARK 465 SER F 117 REMARK 465 THR F 118 REMARK 465 ALA G 115 REMARK 465 SER G 116 REMARK 465 ALA X 115 REMARK 465 SER X 116 REMARK 465 SER X 117 REMARK 465 THR X 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 113 -77.31 57.06 REMARK 500 THR B 106 -139.56 -85.78 REMARK 500 GLN B 107 21.03 -152.61 REMARK 500 ALA D 131 -54.93 -145.97 REMARK 500 ALA F 131 -106.63 -151.25 REMARK 500 LEU X 113 -98.16 -80.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G 247 DISTANCE = 6.08 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RCC RELATED DB: PDB DBREF 6RCD A 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD B 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD C 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD D 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD E 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD F 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD G 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 DBREF 6RCD X 32 132 UNP D5FY31 D5FY31_MYCGT 1250 1350 SEQRES 1 A 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 A 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 A 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 A 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 A 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 A 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 A 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 A 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 B 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 B 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 B 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 B 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 B 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 B 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 B 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 B 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 C 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 C 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 C 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 C 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 C 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 C 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 C 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 C 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 D 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 D 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 D 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 D 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 D 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 D 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 D 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 D 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 E 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 E 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 E 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 E 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 E 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 E 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 E 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 E 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 F 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 F 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 F 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 F 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 F 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 F 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 F 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 F 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 G 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 G 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 G 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 G 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 G 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 G 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 G 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 G 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP SEQRES 1 X 101 ILE SER PHE LYS PRO GLY ASN GLN ILE ASP PHE ASN ARG SEQRES 2 X 101 LEU PHE THR LEU PRO VAL THR GLU LEU PHE ASP PRO ASN SEQRES 3 X 101 THR MET PHE VAL TYR ASP GLN TYR VAL PRO LEU LEU VAL SEQRES 4 X 101 ASN LEU PRO SER GLY PHE ASP GLN ALA SER ILE ARG LEU SEQRES 5 X 101 LYS VAL ILE SER TYR SER VAL GLU ASN GLN THR LEU GLY SEQRES 6 X 101 VAL ARG LEU GLU PHE LYS ASP PRO GLN THR GLN GLN PHE SEQRES 7 X 101 ILE PRO VAL LEU ASN ALA SER SER THR GLY PRO GLN THR SEQRES 8 X 101 VAL PHE GLN PRO PHE ASN GLN TRP ALA ASP FORMUL 9 HOH *588(H2 O) HELIX 1 AA1 ASN A 43 LEU A 45 5 3 HELIX 2 AA2 PRO A 49 LEU A 53 5 5 HELIX 3 AA3 TYR A 62 GLN A 64 5 3 HELIX 4 AA4 TYR A 65 LEU A 69 1 5 HELIX 5 AA5 ASP A 77 ALA A 79 5 3 HELIX 6 AA6 ASN B 43 LEU B 45 5 3 HELIX 7 AA7 PRO B 49 LEU B 53 5 5 HELIX 8 AA8 TYR B 62 GLN B 64 5 3 HELIX 9 AA9 TYR B 65 LEU B 69 1 5 HELIX 10 AB1 ASP B 77 ALA B 79 5 3 HELIX 11 AB2 ASN C 43 LEU C 45 5 3 HELIX 12 AB3 PRO C 49 LEU C 53 5 5 HELIX 13 AB4 TYR C 62 GLN C 64 5 3 HELIX 14 AB5 TYR C 65 LEU C 69 1 5 HELIX 15 AB6 ASP C 77 ALA C 79 5 3 HELIX 16 AB7 ASN D 43 LEU D 45 5 3 HELIX 17 AB8 PRO D 49 LEU D 53 5 5 HELIX 18 AB9 TYR D 62 GLN D 64 5 3 HELIX 19 AC1 TYR D 65 LEU D 69 1 5 HELIX 20 AC2 ASP D 77 ALA D 79 5 3 HELIX 21 AC3 PHE E 42 PHE E 46 1 5 HELIX 22 AC4 PRO E 49 LEU E 53 5 5 HELIX 23 AC5 TYR E 62 GLN E 64 5 3 HELIX 24 AC6 TYR E 65 LEU E 69 1 5 HELIX 25 AC7 ASP E 77 ALA E 79 5 3 HELIX 26 AC8 ASN F 43 LEU F 45 5 3 HELIX 27 AC9 PRO F 49 LEU F 53 5 5 HELIX 28 AD1 TYR F 62 GLN F 64 5 3 HELIX 29 AD2 TYR F 65 LEU F 69 1 5 HELIX 30 AD3 ASP F 77 ALA F 79 5 3 HELIX 31 AD4 PHE G 42 PHE G 46 1 5 HELIX 32 AD5 PRO G 49 LEU G 53 5 5 HELIX 33 AD6 TYR G 62 GLN G 64 5 3 HELIX 34 AD7 TYR G 65 LEU G 69 1 5 HELIX 35 AD8 ASP G 77 ALA G 79 5 3 HELIX 36 AD9 ASN X 43 LEU X 45 5 3 HELIX 37 AE1 PRO X 49 LEU X 53 5 5 HELIX 38 AE2 TYR X 62 GLN X 64 5 3 HELIX 39 AE3 TYR X 65 LEU X 69 1 5 HELIX 40 AE4 ASP X 77 ALA X 79 5 3 SHEET 1 AA1 2 ILE A 40 ASP A 41 0 SHEET 2 AA1 2 VAL E 70 ASN E 71 1 O ASN E 71 N ILE A 40 SHEET 1 AA2 2 VAL A 70 ASN A 71 0 SHEET 2 AA2 2 ILE D 40 ASP D 41 1 O ILE D 40 N ASN A 71 SHEET 1 AA3 3 ILE A 81 SER A 89 0 SHEET 2 AA3 3 THR A 94 LYS A 102 -1 O GLY A 96 N SER A 87 SHEET 3 AA3 3 PHE A 109 PRO A 111 -1 O ILE A 110 N PHE A 101 SHEET 1 AA4 3 ILE A 81 SER A 89 0 SHEET 2 AA4 3 THR A 94 LYS A 102 -1 O GLY A 96 N SER A 87 SHEET 3 AA4 3 THR A 122 PHE A 124 -1 O THR A 122 N VAL A 97 SHEET 1 AA5 2 GLN A 129 ALA A 131 0 SHEET 2 AA5 2 SER D 33 LYS D 35 -1 O LYS D 35 N GLN A 129 SHEET 1 AA6 2 PHE B 34 LYS B 35 0 SHEET 2 AA6 2 GLN X 129 TRP X 130 -1 O GLN X 129 N LYS B 35 SHEET 1 AA7 2 ILE B 40 ASP B 41 0 SHEET 2 AA7 2 VAL X 70 ASN X 71 1 O ASN X 71 N ILE B 40 SHEET 1 AA8 2 VAL B 70 ASN B 71 0 SHEET 2 AA8 2 ILE G 40 ASP G 41 1 O ILE G 40 N ASN B 71 SHEET 1 AA9 3 ILE B 81 SER B 89 0 SHEET 2 AA9 3 THR B 94 LYS B 102 -1 O GLY B 96 N ILE B 86 SHEET 3 AA9 3 PHE B 109 PRO B 111 -1 O ILE B 110 N PHE B 101 SHEET 1 AB1 3 ILE B 81 SER B 89 0 SHEET 2 AB1 3 THR B 94 LYS B 102 -1 O GLY B 96 N ILE B 86 SHEET 3 AB1 3 THR B 122 PHE B 124 -1 O THR B 122 N VAL B 97 SHEET 1 AB2 2 GLN B 129 ALA B 131 0 SHEET 2 AB2 2 SER G 33 LYS G 35 -1 O LYS G 35 N GLN B 129 SHEET 1 AB3 2 SER C 33 LYS C 35 0 SHEET 2 AB3 2 GLN G 129 ALA G 131 -1 O GLN G 129 N LYS C 35 SHEET 1 AB4 2 ILE C 40 ASP C 41 0 SHEET 2 AB4 2 VAL G 70 ASN G 71 1 O ASN G 71 N ILE C 40 SHEET 1 AB5 2 VAL C 70 ASN C 71 0 SHEET 2 AB5 2 ILE X 40 ASP X 41 1 O ILE X 40 N ASN C 71 SHEET 1 AB6 3 ILE C 81 SER C 89 0 SHEET 2 AB6 3 THR C 94 LYS C 102 -1 O GLY C 96 N SER C 87 SHEET 3 AB6 3 PHE C 109 PRO C 111 -1 O ILE C 110 N PHE C 101 SHEET 1 AB7 3 ILE C 81 SER C 89 0 SHEET 2 AB7 3 THR C 94 LYS C 102 -1 O GLY C 96 N SER C 87 SHEET 3 AB7 3 THR C 122 PHE C 124 -1 O PHE C 124 N LEU C 95 SHEET 1 AB8 2 GLN C 129 ALA C 131 0 SHEET 2 AB8 2 SER X 33 LYS X 35 -1 O LYS X 35 N GLN C 129 SHEET 1 AB9 2 VAL D 70 ASN D 71 0 SHEET 2 AB9 2 ILE F 40 ASP F 41 1 O ILE F 40 N ASN D 71 SHEET 1 AC1 3 ILE D 81 SER D 89 0 SHEET 2 AC1 3 THR D 94 LYS D 102 -1 O GLY D 96 N SER D 87 SHEET 3 AC1 3 PHE D 109 PRO D 111 -1 O ILE D 110 N PHE D 101 SHEET 1 AC2 3 ILE D 81 SER D 89 0 SHEET 2 AC2 3 THR D 94 LYS D 102 -1 O GLY D 96 N SER D 87 SHEET 3 AC2 3 THR D 122 PHE D 124 -1 O THR D 122 N VAL D 97 SHEET 1 AC3 2 GLN D 129 TRP D 130 0 SHEET 2 AC3 2 PHE F 34 LYS F 35 -1 O LYS F 35 N GLN D 129 SHEET 1 AC4 2 SER E 33 LYS E 35 0 SHEET 2 AC4 2 GLN F 129 ALA F 131 -1 O GLN F 129 N LYS E 35 SHEET 1 AC5 2 ILE E 40 ASP E 41 0 SHEET 2 AC5 2 VAL F 70 ASN F 71 1 O ASN F 71 N ILE E 40 SHEET 1 AC6 3 ILE E 81 SER E 89 0 SHEET 2 AC6 3 THR E 94 LYS E 102 -1 O GLY E 96 N SER E 87 SHEET 3 AC6 3 PHE E 109 PRO E 111 -1 O ILE E 110 N PHE E 101 SHEET 1 AC7 3 ILE E 81 SER E 89 0 SHEET 2 AC7 3 THR E 94 LYS E 102 -1 O GLY E 96 N SER E 87 SHEET 3 AC7 3 THR E 122 PHE E 124 -1 O THR E 122 N VAL E 97 SHEET 1 AC8 3 ILE F 81 SER F 89 0 SHEET 2 AC8 3 THR F 94 LYS F 102 -1 O GLY F 96 N ILE F 86 SHEET 3 AC8 3 PHE F 109 PRO F 111 -1 O ILE F 110 N PHE F 101 SHEET 1 AC9 3 ILE F 81 SER F 89 0 SHEET 2 AC9 3 THR F 94 LYS F 102 -1 O GLY F 96 N ILE F 86 SHEET 3 AC9 3 THR F 122 PHE F 124 -1 O THR F 122 N VAL F 97 SHEET 1 AD1 3 ILE G 81 SER G 89 0 SHEET 2 AD1 3 THR G 94 LYS G 102 -1 O GLY G 96 N SER G 87 SHEET 3 AD1 3 PHE G 109 PRO G 111 -1 O ILE G 110 N PHE G 101 SHEET 1 AD2 3 ILE G 81 SER G 89 0 SHEET 2 AD2 3 THR G 94 LYS G 102 -1 O GLY G 96 N SER G 87 SHEET 3 AD2 3 THR G 122 PHE G 124 -1 O THR G 122 N VAL G 97 SHEET 1 AD3 3 ILE X 81 SER X 89 0 SHEET 2 AD3 3 THR X 94 LYS X 102 -1 O GLY X 96 N SER X 87 SHEET 3 AD3 3 PHE X 109 PRO X 111 -1 O ILE X 110 N PHE X 101 SHEET 1 AD4 3 ILE X 81 SER X 89 0 SHEET 2 AD4 3 THR X 94 LYS X 102 -1 O GLY X 96 N SER X 87 SHEET 3 AD4 3 THR X 122 PHE X 124 -1 O THR X 122 N VAL X 97 CRYST1 114.509 83.020 118.160 90.00 117.50 90.00 C 1 2 1 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008733 0.000000 0.004546 0.00000 SCALE2 0.000000 0.012045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009541 0.00000