HEADER MEMBRANE PROTEIN 12-APR-19 6REW OBSLTE 15-FEB-23 6REW 6YC3 TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN THE TITLE 2 PENTAMERIC FORM, PH 8.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM PUMPING RHODOPSIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DOKDONIA EIKASTA; SOURCE 3 ORGANISM_TAXID: 308116; SOURCE 4 GENE: NAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGHT-DRIVEN SODIUM PUMP, ION TRANSLOCATION, RETINAL, RHODOPSIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,V.POLOVINKIN,I.GUSHCHIN,V.BORSHCHEVSKIY,V.GORDELIY REVDAT 3 15-FEB-23 6REW 1 OBSLTE HETSYN REVDAT 2 29-JUL-20 6REW 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 24-APR-19 6REW 0 JRNL AUTH K.KOVALEV,V.POLOVINKIN,I.GUSHCHIN,A.ALEKSEEV,V.SHEVCHENKO, JRNL AUTH 2 V.BORSHCHEVSKIY,R.ASTASHKIN,T.BALANDIN,D.BRATANOV, JRNL AUTH 3 S.VAGANOVA,A.POPOV,V.CHUPIN,G.BULDT,E.BAMBERG,V.GORDELIY JRNL TITL STRUCTURE AND MECHANISMS OF SODIUM-PUMPING KR2 RHODOPSIN. JRNL REF SCI ADV V. 5 V2671 2019 JRNL REFN ESSN 2375-2548 JRNL PMID 30989112 JRNL DOI 10.1126/SCIADV.AAV2671 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 102502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 413 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1315 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : -1.37000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12422 ; 0.004 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 12227 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16512 ; 0.831 ; 1.734 REMARK 3 BOND ANGLES OTHERS (DEGREES): 28410 ; 0.857 ; 1.862 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1374 ; 6.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 490 ;36.879 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1770 ;15.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1511 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12850 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2588 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 10 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 275 B 3 275 9952 0.050 0.050 REMARK 3 2 A 3 275 C 3 275 9959 0.050 0.050 REMARK 3 3 A 3 275 D 3 275 9922 0.050 0.050 REMARK 3 4 A 3 275 E 3 275 9938 0.050 0.050 REMARK 3 5 B 3 275 C 3 275 9930 0.050 0.050 REMARK 3 6 B 3 275 D 3 275 9916 0.050 0.050 REMARK 3 7 B 3 275 E 3 275 9899 0.060 0.050 REMARK 3 8 C 3 275 D 3 275 9917 0.050 0.050 REMARK 3 9 C 3 275 E 3 275 9942 0.050 0.050 REMARK 3 10 D 3 275 E 3 275 9957 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6REW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.982 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107966 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 75.35 REMARK 200 R MERGE (I) : 0.01300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XTL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.4 M SODIUM MALONATE PH 8.0, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 119.79500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 119.79500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.68000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 119.79500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.62500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.68000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 119.79500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 56 CE NZ REMARK 470 LYS A 187 NZ REMARK 470 LYS A 271 CE NZ REMARK 470 LYS B 134 CE NZ REMARK 470 LYS B 202 CD CE NZ REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 LYS C 134 CE NZ REMARK 470 LYS C 187 NZ REMARK 470 LYS C 202 CE NZ REMARK 470 LYS C 271 CD CE NZ REMARK 470 LYS D 187 NZ REMARK 470 LYS D 202 CE NZ REMARK 470 LYS D 271 CD CE NZ REMARK 470 ASN D 272 CG OD1 ND2 REMARK 470 GLU D 274 CG CD OE1 OE2 REMARK 470 LEU D 275 CG CD1 CD2 REMARK 470 LYS E 187 NZ REMARK 470 LYS E 202 CE NZ REMARK 470 LYS E 271 CG CD CE NZ REMARK 470 ASN E 272 CG OD1 ND2 REMARK 470 GLU E 274 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 496 O HOH C 499 2.00 REMARK 500 O HOH E 488 O HOH E 502 2.03 REMARK 500 OG SER E 60 O HOH E 401 2.06 REMARK 500 OG SER D 60 O HOH D 401 2.07 REMARK 500 OG SER C 60 O HOH C 401 2.14 REMARK 500 O LYS B 273 O HOH B 401 2.18 REMARK 500 OG SER A 60 O HOH A 401 2.19 REMARK 500 N ASP B 231 O6 BOG B 314 2.19 REMARK 500 N ASP D 231 O6 BOG D 317 2.19 REMARK 500 O HOH A 412 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -65.97 -104.46 REMARK 500 ASP A 102 154.49 80.44 REMARK 500 THR A 131 -75.30 -110.01 REMARK 500 ASN A 163 86.06 -160.20 REMARK 500 THR B 17 -66.78 -102.39 REMARK 500 ASP B 102 154.88 80.95 REMARK 500 THR B 131 -71.92 -113.68 REMARK 500 ASN B 163 86.19 -159.76 REMARK 500 GLU B 274 -60.54 -120.32 REMARK 500 THR C 17 -67.34 -100.46 REMARK 500 ASP C 102 154.29 80.20 REMARK 500 THR C 131 -74.50 -110.60 REMARK 500 ASN C 163 86.33 -160.26 REMARK 500 THR D 17 -66.65 -103.19 REMARK 500 ASP D 102 156.15 80.22 REMARK 500 THR D 131 -74.28 -109.87 REMARK 500 ASN D 163 86.61 -159.51 REMARK 500 THR E 17 -66.50 -103.03 REMARK 500 ASP E 102 153.89 81.76 REMARK 500 ASN E 163 85.85 -160.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 272 LYS A 273 -147.07 REMARK 500 ASN B 272 LYS B 273 -147.04 REMARK 500 ASN C 272 LYS C 273 -142.16 REMARK 500 ASN E 272 LYS E 273 -146.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 243 0.09 SIDE CHAIN REMARK 500 ARG B 243 0.08 SIDE CHAIN REMARK 500 ARG D 243 0.08 SIDE CHAIN REMARK 500 ARG E 243 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 301 REMARK 610 OLC A 302 REMARK 610 OLC A 304 REMARK 610 OLC A 306 REMARK 610 OLC A 307 REMARK 610 OLC A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 LFA A 313 REMARK 610 LFA A 314 REMARK 610 OLC A 317 REMARK 610 OLC A 318 REMARK 610 LFA A 320 REMARK 610 OLC B 301 REMARK 610 OLC B 304 REMARK 610 OLC B 305 REMARK 610 OLC B 306 REMARK 610 OLC B 307 REMARK 610 OLC B 308 REMARK 610 LFA B 309 REMARK 610 LFA B 310 REMARK 610 LFA B 311 REMARK 610 LFA B 312 REMARK 610 OLC C 301 REMARK 610 OLC C 302 REMARK 610 OLC C 304 REMARK 610 OLC C 305 REMARK 610 OLC C 306 REMARK 610 OLC C 307 REMARK 610 OLC C 308 REMARK 610 OLC C 309 REMARK 610 LFA C 310 REMARK 610 LFA C 311 REMARK 610 LFA C 313 REMARK 610 LFA C 314 REMARK 610 LFA C 318 REMARK 610 OLC D 301 REMARK 610 OLC D 302 REMARK 610 OLC D 303 REMARK 610 OLC D 305 REMARK 610 OLC D 306 REMARK 610 OLC D 307 REMARK 610 OLC D 308 REMARK 610 LFA D 312 REMARK 610 LFA D 313 REMARK 610 LFA D 314 REMARK 610 LFA D 315 REMARK 610 OLC E 303 REMARK 610 OLC E 304 REMARK 610 OLC E 305 REMARK 610 OLC E 306 REMARK 610 OLC E 307 REMARK 610 OLC E 308 REMARK 610 OLC E 309 REMARK 610 OLC E 310 REMARK 610 LFA E 311 REMARK 610 LFA E 312 REMARK 610 LFA E 313 REMARK 610 LFA E 314 REMARK 610 LFA E 317 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 315 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 25 OH REMARK 620 2 THR A 83 O 91.2 REMARK 620 3 PHE A 86 O 99.0 91.8 REMARK 620 4 HOH A 450 O 169.3 95.0 89.5 REMARK 620 5 ASP B 102 OD1 79.3 145.4 122.4 90.7 REMARK 620 6 HOH B 451 O 93.2 82.9 166.8 79.0 64.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 315 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD1 REMARK 620 2 TYR E 25 OH 79.5 REMARK 620 3 THR E 83 O 145.8 92.3 REMARK 620 4 PHE E 86 O 121.5 100.5 92.6 REMARK 620 5 HOH E 453 O 88.2 166.8 95.3 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 313 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 25 OH REMARK 620 2 THR B 83 O 92.4 REMARK 620 3 PHE B 86 O 103.3 92.3 REMARK 620 4 HOH B 472 O 164.1 93.5 91.3 REMARK 620 5 ASP C 102 OD1 80.6 141.4 126.3 85.6 REMARK 620 6 HOH C 478 O 95.3 78.7 159.7 71.4 64.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 316 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 25 OH REMARK 620 2 THR C 83 O 91.0 REMARK 620 3 PHE C 86 O 99.3 91.3 REMARK 620 4 HOH C 451 O 169.0 95.0 89.8 REMARK 620 5 ASP D 102 OD1 82.0 143.5 125.1 87.7 REMARK 620 6 HOH D 444 O 91.7 80.8 166.6 80.3 63.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 316 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 25 OH REMARK 620 2 THR D 83 O 92.1 REMARK 620 3 PHE D 86 O 100.0 92.0 REMARK 620 4 HOH D 438 O 168.2 90.8 91.3 REMARK 620 5 ASP E 102 OD1 82.1 145.4 122.6 89.0 REMARK 620 N 1 2 3 4 DBREF 6REW A 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REW B 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REW C 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REW D 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REW E 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 SEQRES 1 A 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 A 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 A 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 A 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 A 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 A 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 A 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 A 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 A 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 A 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 A 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 A 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 A 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 A 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 A 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 A 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 A 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 A 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 A 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 A 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 A 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 B 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 B 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 B 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 B 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 B 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 B 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 B 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 B 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 B 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 B 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 B 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 B 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 B 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 B 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 B 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 B 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 B 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 B 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 B 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 B 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 B 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 C 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 C 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 C 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 C 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 C 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 C 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 C 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 C 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 C 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 C 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 C 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 C 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 C 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 C 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 C 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 C 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 C 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 C 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 C 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 C 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 C 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 D 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 D 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 D 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 D 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 D 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 D 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 D 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 D 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 D 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 D 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 D 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 D 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 D 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 D 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 D 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 D 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 D 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 D 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 D 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 D 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 D 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 E 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 E 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 E 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 E 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 E 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 E 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 E 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 E 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 E 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 E 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 E 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 E 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 E 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 E 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 E 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 E 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 E 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 E 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 E 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 E 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 E 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU HET OLC A 301 9 HET OLC A 302 22 HET OLC A 303 25 HET OLC A 304 13 HET OLC A 305 25 HET OLC A 306 15 HET OLC A 307 7 HET OLC A 308 16 HET LFA A 309 7 HET LFA A 310 8 HET LFA A 311 8 HET LFA A 312 4 HET LFA A 313 6 HET LFA A 314 16 HET NA A 315 1 HET BOG A 316 20 HET OLC A 317 19 HET OLC A 318 20 HET LFA A 319 20 HET LFA A 320 9 HET RET A 321 20 HET OLC B 301 22 HET LFA B 302 20 HET OLC B 303 25 HET OLC B 304 21 HET OLC B 305 20 HET OLC B 306 21 HET OLC B 307 16 HET OLC B 308 7 HET LFA B 309 9 HET LFA B 310 8 HET LFA B 311 10 HET LFA B 312 7 HET NA B 313 1 HET BOG B 314 20 HET RET B 315 20 HET OLC C 301 20 HET OLC C 302 12 HET LFA C 303 20 HET OLC C 304 23 HET OLC C 305 22 HET OLC C 306 20 HET OLC C 307 22 HET OLC C 308 16 HET OLC C 309 7 HET LFA C 310 7 HET LFA C 311 8 HET LFA C 312 20 HET LFA C 313 6 HET LFA C 314 4 HET LFA C 315 20 HET NA C 316 1 HET BOG C 317 20 HET LFA C 318 14 HET RET C 319 20 HET OLC D 301 18 HET OLC D 302 16 HET OLC D 303 13 HET OLC D 304 25 HET OLC D 305 18 HET OLC D 306 18 HET OLC D 307 14 HET OLC D 308 7 HET OLC D 309 25 HET LFA D 310 20 HET LFA D 311 20 HET LFA D 312 8 HET LFA D 313 17 HET LFA D 314 7 HET LFA D 315 6 HET NA D 316 1 HET BOG D 317 20 HET RET D 318 20 HET OLC E 301 25 HET LFA E 302 20 HET OLC E 303 8 HET OLC E 304 16 HET OLC E 305 20 HET OLC E 306 15 HET OLC E 307 15 HET OLC E 308 6 HET OLC E 309 22 HET OLC E 310 20 HET LFA E 311 8 HET LFA E 312 14 HET LFA E 313 4 HET LFA E 314 5 HET NA E 315 1 HET BOG E 316 20 HET LFA E 317 4 HET RET E 318 20 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM LFA EICOSANE HETNAM NA SODIUM ION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM RET RETINAL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN LFA LIPID FRAGMENT HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 6 OLC 43(C21 H40 O4) FORMUL 14 LFA 33(C20 H42) FORMUL 20 NA 5(NA 1+) FORMUL 21 BOG 5(C14 H28 O6) FORMUL 26 RET 5(C20 H28 O) FORMUL 97 HOH *541(H2 O) HELIX 1 AA1 ASN A 9 GLU A 18 1 10 HELIX 2 AA2 SER A 21 THR A 49 1 29 HELIX 3 AA3 ILE A 50 VAL A 53 5 4 HELIX 4 AA4 ASP A 54 LYS A 56 5 3 HELIX 5 AA5 PHE A 57 SER A 85 1 29 HELIX 6 AA6 PRO A 99 ASP A 102 5 4 HELIX 7 AA7 ASN A 106 ILE A 124 1 19 HELIX 8 AA8 LEU A 125 VAL A 127 5 3 HELIX 9 AA9 LYS A 134 PHE A 158 1 25 HELIX 10 AB1 ASN A 163 GLU A 194 1 32 HELIX 11 AB2 SER A 197 MET A 224 1 28 HELIX 12 AB3 PRO A 225 LEU A 227 5 3 HELIX 13 AB4 SER A 236 SER A 270 1 35 HELIX 14 AB5 ASN B 9 GLU B 18 1 10 HELIX 15 AB6 SER B 21 THR B 49 1 29 HELIX 16 AB7 ILE B 50 VAL B 53 5 4 HELIX 17 AB8 ASP B 54 LYS B 56 5 3 HELIX 18 AB9 PHE B 57 SER B 85 1 29 HELIX 19 AC1 PRO B 99 ASP B 102 5 4 HELIX 20 AC2 ASN B 106 ILE B 124 1 19 HELIX 21 AC3 LEU B 125 VAL B 127 5 3 HELIX 22 AC4 LYS B 134 PHE B 158 1 25 HELIX 23 AC5 ASN B 163 GLU B 194 1 32 HELIX 24 AC6 SER B 197 MET B 224 1 28 HELIX 25 AC7 PRO B 225 LEU B 227 5 3 HELIX 26 AC8 SER B 236 SER B 270 1 35 HELIX 27 AC9 ASN C 9 GLU C 18 1 10 HELIX 28 AD1 SER C 21 THR C 49 1 29 HELIX 29 AD2 ILE C 50 VAL C 53 5 4 HELIX 30 AD3 ASP C 54 LYS C 56 5 3 HELIX 31 AD4 PHE C 57 SER C 85 1 29 HELIX 32 AD5 PRO C 99 ASP C 102 5 4 HELIX 33 AD6 ASN C 106 ILE C 124 1 19 HELIX 34 AD7 LEU C 125 VAL C 127 5 3 HELIX 35 AD8 LYS C 134 PHE C 158 1 25 HELIX 36 AD9 ASN C 163 GLU C 194 1 32 HELIX 37 AE1 SER C 197 MET C 224 1 28 HELIX 38 AE2 PRO C 225 LEU C 227 5 3 HELIX 39 AE3 SER C 236 SER C 270 1 35 HELIX 40 AE4 ASN D 9 GLU D 18 1 10 HELIX 41 AE5 SER D 21 THR D 49 1 29 HELIX 42 AE6 ILE D 50 VAL D 53 5 4 HELIX 43 AE7 ASP D 54 LYS D 56 5 3 HELIX 44 AE8 PHE D 57 SER D 85 1 29 HELIX 45 AE9 PRO D 99 ASP D 102 5 4 HELIX 46 AF1 ASN D 106 ILE D 124 1 19 HELIX 47 AF2 LEU D 125 VAL D 127 5 3 HELIX 48 AF3 LYS D 134 PHE D 158 1 25 HELIX 49 AF4 ASN D 163 GLU D 194 1 32 HELIX 50 AF5 SER D 197 MET D 224 1 28 HELIX 51 AF6 PRO D 225 LEU D 227 5 3 HELIX 52 AF7 SER D 236 SER D 270 1 35 HELIX 53 AF8 ASN E 9 GLU E 18 1 10 HELIX 54 AF9 SER E 21 THR E 49 1 29 HELIX 55 AG1 ILE E 50 VAL E 53 5 4 HELIX 56 AG2 ASP E 54 LYS E 56 5 3 HELIX 57 AG3 PHE E 57 SER E 85 1 29 HELIX 58 AG4 PRO E 99 ASP E 102 5 4 HELIX 59 AG5 ASN E 106 ILE E 124 1 19 HELIX 60 AG6 LEU E 125 VAL E 127 5 3 HELIX 61 AG7 LYS E 134 PHE E 158 1 25 HELIX 62 AG8 ASN E 163 GLU E 194 1 32 HELIX 63 AG9 SER E 197 MET E 224 1 28 HELIX 64 AH1 PRO E 225 LEU E 227 5 3 HELIX 65 AH2 SER E 236 SER E 270 1 35 SHEET 1 AA1 2 PHE A 86 ASN A 89 0 SHEET 2 AA1 2 ARG A 94 LEU A 97 -1 O ARG A 94 N ASN A 89 SHEET 1 AA2 2 PHE B 86 ASN B 89 0 SHEET 2 AA2 2 ARG B 94 LEU B 97 -1 O ARG B 94 N ASN B 89 SHEET 1 AA3 2 PHE C 86 ASN C 89 0 SHEET 2 AA3 2 ARG C 94 LEU C 97 -1 O ARG C 94 N ASN C 89 SHEET 1 AA4 2 PHE D 86 ASN D 89 0 SHEET 2 AA4 2 ARG D 94 LEU D 97 -1 O ARG D 94 N ASN D 89 SHEET 1 AA5 2 PHE E 86 ASN E 89 0 SHEET 2 AA5 2 ARG E 94 LEU E 97 -1 O ARG E 94 N ASN E 89 LINK NZ LYS A 255 C15 RET A 321 1555 1555 1.44 LINK NZ LYS B 255 C15 RET B 315 1555 1555 1.45 LINK NZ LYS C 255 C15 RET C 319 1555 1555 1.45 LINK NZ LYS D 255 C15 RET D 318 1555 1555 1.45 LINK NZ LYS E 255 C15 RET E 318 1555 1555 1.45 LINK OH TYR A 25 NA NA A 315 1555 1555 2.47 LINK O THR A 83 NA NA A 315 1555 1555 2.30 LINK O PHE A 86 NA NA A 315 1555 1555 2.28 LINK OD1 ASP A 102 NA NA E 315 1555 1555 2.50 LINK NA NA A 315 O HOH A 450 1555 1555 2.26 LINK NA NA A 315 OD1 ASP B 102 1555 1555 2.51 LINK NA NA A 315 O HOH B 451 1555 1555 2.86 LINK OH TYR B 25 NA NA B 313 1555 1555 2.39 LINK O THR B 83 NA NA B 313 1555 1555 2.32 LINK O PHE B 86 NA NA B 313 1555 1555 2.27 LINK NA NA B 313 O HOH B 472 1555 1555 2.32 LINK NA NA B 313 OD1 ASP C 102 1555 1555 2.48 LINK NA NA B 313 O HOH C 478 1555 1555 2.92 LINK OH TYR C 25 NA NA C 316 1555 1555 2.45 LINK O THR C 83 NA NA C 316 1555 1555 2.31 LINK O PHE C 86 NA NA C 316 1555 1555 2.27 LINK NA NA C 316 O HOH C 451 1555 1555 2.26 LINK NA NA C 316 OD1 ASP D 102 1555 1555 2.46 LINK NA NA C 316 O HOH D 444 1555 1555 2.87 LINK OH TYR D 25 NA NA D 316 1555 1555 2.43 LINK O THR D 83 NA NA D 316 1555 1555 2.30 LINK O PHE D 86 NA NA D 316 1555 1555 2.28 LINK NA NA D 316 O HOH D 438 1555 1555 2.42 LINK NA NA D 316 OD1 ASP E 102 1555 1555 2.50 LINK OH TYR E 25 NA NA E 315 1555 1555 2.43 LINK O THR E 83 NA NA E 315 1555 1555 2.29 LINK O PHE E 86 NA NA E 315 1555 1555 2.30 LINK NA NA E 315 O HOH E 453 1555 1555 2.28 CRYST1 131.360 239.590 135.250 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007394 0.00000