HEADER MEMBRANE PROTEIN 12-APR-19 6REZ TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN THE TITLE 2 PENTAMERIC FORM, PH 5.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM PUMPING RHODOPSIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DOKDONIA EIKASTA; SOURCE 3 ORGANISM_TAXID: 308116; SOURCE 4 GENE: NAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGHT-DRIVEN SODIUM PUMP, ION TRANSLOCATION, RETINAL, RHODOPSIN, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,V.POLOVINKIN,I.GUSHCHIN,V.BORSHCHEVSKIY,V.GORDELIY REVDAT 3 13-NOV-24 6REZ 1 REMARK REVDAT 2 24-JAN-24 6REZ 1 REMARK LINK REVDAT 1 24-APR-19 6REZ 0 JRNL AUTH K.KOVALEV,V.POLOVINKIN,I.GUSHCHIN,A.ALEKSEEV,V.SHEVCHENKO, JRNL AUTH 2 V.BORSHCHEVSKIY,R.ASTASHKIN,T.BALANDIN,D.BRATANOV, JRNL AUTH 3 S.VAGANOVA,A.POPOV,V.CHUPIN,G.BULDT,E.BAMBERG,V.GORDELIY JRNL TITL STRUCTURE AND MECHANISMS OF SODIUM-PUMPING KR2 RHODOPSIN. JRNL REF SCI ADV V. 5 V2671 2019 JRNL REFN ESSN 2375-2548 JRNL PMID 30989112 JRNL DOI 10.1126/SCIADV.AAV2671 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 61464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3301 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 522 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.87000 REMARK 3 B22 (A**2) : -5.76000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.440 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11699 ; 0.002 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 11084 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15775 ; 0.542 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25634 ; 0.761 ; 1.740 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1385 ; 7.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 495 ;37.160 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1756 ;17.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1460 ; 0.031 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12727 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2546 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 10 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 275 B 3 275 9930 0.040 0.050 REMARK 3 2 A 3 275 C 3 275 9955 0.040 0.050 REMARK 3 3 A 3 271 D 3 271 9845 0.040 0.050 REMARK 3 4 A 3 275 E 3 275 9918 0.040 0.050 REMARK 3 5 B 3 275 C 3 275 9924 0.040 0.050 REMARK 3 6 B 3 271 D 3 271 9819 0.040 0.050 REMARK 3 7 B 3 275 E 3 275 9867 0.050 0.050 REMARK 3 8 C 3 271 D 3 271 9838 0.040 0.050 REMARK 3 9 C 3 275 E 3 275 9924 0.040 0.050 REMARK 3 10 D 3 271 E 3 271 9837 0.040 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6REZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 1.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XTN CHAIN D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.4 M SODIUM MALONATE PH 8.0, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.55450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.55450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.12050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 120.69600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.12050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 120.69600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.55450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.12050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 120.69600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.55450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.12050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 120.69600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS D 273 REMARK 465 GLU D 274 REMARK 465 LEU D 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 55 CE NZ REMARK 470 LYS A 56 CE NZ REMARK 470 LYS A 187 NZ REMARK 470 LYS A 271 CE NZ REMARK 470 LYS B 51 CE NZ REMARK 470 LYS B 55 CE NZ REMARK 470 LYS B 134 CE NZ REMARK 470 LYS B 202 CD CE NZ REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 LYS C 51 CE NZ REMARK 470 LYS C 55 CE NZ REMARK 470 LYS C 134 CE NZ REMARK 470 LYS C 187 NZ REMARK 470 LYS C 202 CE NZ REMARK 470 LYS C 271 CD CE NZ REMARK 470 LYS D 51 CE NZ REMARK 470 LYS D 55 CE NZ REMARK 470 VAL D 69 CA REMARK 470 LYS D 187 NZ REMARK 470 LYS D 202 CE NZ REMARK 470 LYS D 271 CD CE NZ REMARK 470 ASN D 272 CG OD1 ND2 REMARK 470 LYS E 51 CE NZ REMARK 470 LYS E 55 CE NZ REMARK 470 LYS E 187 NZ REMARK 470 LYS E 202 CE NZ REMARK 470 LYS E 271 CG CD CE NZ REMARK 470 ASN E 272 CG OD1 ND2 REMARK 470 LYS E 273 CG CD CE NZ REMARK 470 GLU E 274 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 70 OD1 ASN C 112 2.13 REMARK 500 OH TYR A 247 O HOH A 403 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -71.42 -108.75 REMARK 500 ASP A 102 154.71 78.08 REMARK 500 THR A 131 -73.40 -117.62 REMARK 500 ASN A 163 88.95 -165.13 REMARK 500 SER A 236 179.66 179.68 REMARK 500 THR B 17 -70.66 -108.40 REMARK 500 ASP B 102 155.27 78.59 REMARK 500 THR B 131 -72.85 -120.57 REMARK 500 ASN B 163 88.82 -167.13 REMARK 500 SER B 236 178.98 179.51 REMARK 500 THR C 17 -69.83 -108.79 REMARK 500 ASP C 102 154.51 78.06 REMARK 500 THR C 131 -73.61 -118.60 REMARK 500 ASN C 163 88.30 -166.30 REMARK 500 THR D 17 -70.35 -108.75 REMARK 500 ASP D 102 155.84 77.80 REMARK 500 THR D 131 -73.45 -117.76 REMARK 500 ASN D 163 88.52 -165.65 REMARK 500 SER D 236 179.81 179.99 REMARK 500 THR E 17 -70.79 -108.75 REMARK 500 ASP E 102 155.58 78.00 REMARK 500 THR E 131 -68.10 -120.32 REMARK 500 ASN E 163 88.24 -166.15 REMARK 500 SER E 236 -179.73 -178.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 301 REMARK 610 LFA A 302 REMARK 610 OLC A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA B 301 REMARK 610 LFA B 302 REMARK 610 OLC B 303 REMARK 610 LFA B 304 REMARK 610 LFA B 305 REMARK 610 LFA B 306 REMARK 610 LFA B 307 REMARK 610 LFA C 301 REMARK 610 OLC C 302 REMARK 610 LFA C 303 REMARK 610 LFA C 304 REMARK 610 LFA C 305 REMARK 610 LFA C 306 REMARK 610 LFA C 307 REMARK 610 LFA C 308 REMARK 610 LFA D 301 REMARK 610 OLC D 302 REMARK 610 LFA D 303 REMARK 610 LFA D 304 REMARK 610 LFA D 305 REMARK 610 LFA D 306 REMARK 610 LFA E 301 REMARK 610 LFA E 302 REMARK 610 OLC E 303 REMARK 610 LFA E 304 REMARK 610 LFA E 305 REMARK 610 LFA E 306 REMARK 610 LFA E 307 REMARK 610 LFA E 308 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 25 OH REMARK 620 2 THR A 83 O 91.9 REMARK 620 3 PHE A 86 O 95.8 79.3 REMARK 620 4 HOH A 413 O 162.0 71.9 74.0 REMARK 620 5 ASP B 102 OD1 86.4 162.0 118.7 111.4 REMARK 620 6 ASP B 102 OD2 56.0 119.7 143.7 139.0 45.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD1 REMARK 620 2 TYR E 25 OH 78.6 REMARK 620 3 THR E 83 O 154.3 86.3 REMARK 620 4 PHE E 86 O 119.6 91.2 81.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 25 OH REMARK 620 2 THR B 83 O 88.3 REMARK 620 3 PHE B 86 O 97.4 84.5 REMARK 620 4 HOH B 416 O 168.3 98.8 92.6 REMARK 620 5 ASP C 102 OD1 77.5 148.1 125.2 91.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 25 OH REMARK 620 2 THR C 83 O 92.5 REMARK 620 3 PHE C 86 O 103.6 84.7 REMARK 620 4 HOH C 421 O 164.4 97.2 89.5 REMARK 620 5 ASP D 102 OD1 84.1 147.7 127.4 81.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 25 OH REMARK 620 2 THR D 83 O 85.9 REMARK 620 3 PHE D 86 O 90.6 83.5 REMARK 620 4 HOH D 403 O 158.3 77.1 74.4 REMARK 620 5 ASP E 102 OD1 76.7 152.2 117.8 124.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA C 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA D 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA D 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA E 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA E 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA E 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA E 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET B 309 and LYS B REMARK 800 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET C 310 and LYS C REMARK 800 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET D 308 and LYS D REMARK 800 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET E 310 and LYS E REMARK 800 255 DBREF 6REZ A 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REZ B 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REZ C 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REZ D 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 DBREF 6REZ E 3 275 UNP N0DKS8 N0DKS8_9FLAO 3 275 SEQRES 1 A 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 A 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 A 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 A 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 A 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 A 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 A 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 A 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 A 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 A 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 A 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 A 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 A 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 A 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 A 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 A 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 A 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 A 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 A 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 A 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 A 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 B 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 B 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 B 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 B 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 B 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 B 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 B 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 B 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 B 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 B 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 B 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 B 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 B 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 B 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 B 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 B 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 B 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 B 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 B 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 B 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 B 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 C 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 C 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 C 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 C 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 C 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 C 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 C 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 C 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 C 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 C 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 C 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 C 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 C 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 C 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 C 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 C 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 C 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 C 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 C 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 C 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 C 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 D 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 D 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 D 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 D 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 D 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 D 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 D 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 D 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 D 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 D 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 D 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 D 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 D 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 D 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 D 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 D 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 D 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 D 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 D 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 D 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 D 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU SEQRES 1 E 273 GLN GLU LEU GLY ASN ALA ASN PHE GLU ASN PHE ILE GLY SEQRES 2 E 273 ALA THR GLU GLY PHE SER GLU ILE ALA TYR GLN PHE THR SEQRES 3 E 273 SER HIS ILE LEU THR LEU GLY TYR ALA VAL MET LEU ALA SEQRES 4 E 273 GLY LEU LEU TYR PHE ILE LEU THR ILE LYS ASN VAL ASP SEQRES 5 E 273 LYS LYS PHE GLN MET SER ASN ILE LEU SER ALA VAL VAL SEQRES 6 E 273 MET VAL SER ALA PHE LEU LEU LEU TYR ALA GLN ALA GLN SEQRES 7 E 273 ASN TRP THR SER SER PHE THR PHE ASN GLU GLU VAL GLY SEQRES 8 E 273 ARG TYR PHE LEU ASP PRO SER GLY ASP LEU PHE ASN ASN SEQRES 9 E 273 GLY TYR ARG TYR LEU ASN TRP LEU ILE ASP VAL PRO MET SEQRES 10 E 273 LEU LEU PHE GLN ILE LEU PHE VAL VAL SER LEU THR THR SEQRES 11 E 273 SER LYS PHE SER SER VAL ARG ASN GLN PHE TRP PHE SER SEQRES 12 E 273 GLY ALA MET MET ILE ILE THR GLY TYR ILE GLY GLN PHE SEQRES 13 E 273 TYR GLU VAL SER ASN LEU THR ALA PHE LEU VAL TRP GLY SEQRES 14 E 273 ALA ILE SER SER ALA PHE PHE PHE HIS ILE LEU TRP VAL SEQRES 15 E 273 MET LYS LYS VAL ILE ASN GLU GLY LYS GLU GLY ILE SER SEQRES 16 E 273 PRO ALA GLY GLN LYS ILE LEU SER ASN ILE TRP ILE LEU SEQRES 17 E 273 PHE LEU ILE SER TRP THR LEU TYR PRO GLY ALA TYR LEU SEQRES 18 E 273 MET PRO TYR LEU THR GLY VAL ASP GLY PHE LEU TYR SER SEQRES 19 E 273 GLU ASP GLY VAL MET ALA ARG GLN LEU VAL TYR THR ILE SEQRES 20 E 273 ALA ASP VAL SER SER LYS VAL ILE TYR GLY VAL LEU LEU SEQRES 21 E 273 GLY ASN LEU ALA ILE THR LEU SER LYS ASN LYS GLU LEU HET LFA A 301 18 HET LFA A 302 16 HET OLC A 303 10 HET LFA A 304 5 HET LFA A 305 11 HET LFA A 306 15 HET LFA A 307 7 HET NA A 308 1 HET RET A 309 20 HET LFA B 301 17 HET LFA B 302 18 HET OLC B 303 10 HET LFA B 304 5 HET LFA B 305 10 HET LFA B 306 6 HET LFA B 307 16 HET NA B 308 1 HET RET B 309 20 HET LFA C 301 19 HET OLC C 302 11 HET LFA C 303 10 HET LFA C 304 5 HET LFA C 305 16 HET LFA C 306 10 HET LFA C 307 17 HET LFA C 308 7 HET NA C 309 1 HET RET C 310 20 HET LFA D 301 17 HET OLC D 302 9 HET LFA D 303 5 HET LFA D 304 16 HET LFA D 305 6 HET LFA D 306 16 HET NA D 307 1 HET RET D 308 20 HET LFA E 301 15 HET LFA E 302 16 HET OLC E 303 10 HET LFA E 304 5 HET LFA E 305 10 HET LFA E 306 15 HET LFA E 307 9 HET LFA E 308 9 HET NA E 309 1 HET RET E 310 20 HETNAM LFA EICOSANE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM NA SODIUM ION HETNAM RET RETINAL HETSYN LFA LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 6 LFA 31(C20 H42) FORMUL 8 OLC 5(C21 H40 O4) FORMUL 13 NA 5(NA 1+) FORMUL 14 RET 5(C20 H28 O) FORMUL 52 HOH *97(H2 O) HELIX 1 AA1 ASN A 9 GLU A 18 1 10 HELIX 2 AA2 SER A 21 THR A 49 1 29 HELIX 3 AA3 ILE A 50 VAL A 53 5 4 HELIX 4 AA4 ASP A 54 LYS A 56 5 3 HELIX 5 AA5 PHE A 57 SER A 85 1 29 HELIX 6 AA6 PRO A 99 ASP A 102 5 4 HELIX 7 AA7 ASN A 106 ILE A 124 1 19 HELIX 8 AA8 LEU A 125 VAL A 127 5 3 HELIX 9 AA9 LYS A 134 GLN A 157 1 24 HELIX 10 AB1 PHE A 158 GLU A 160 5 3 HELIX 11 AB2 ASN A 163 GLU A 194 1 32 HELIX 12 AB3 SER A 197 MET A 224 1 28 HELIX 13 AB4 PRO A 225 LEU A 227 5 3 HELIX 14 AB5 SER A 236 LEU A 269 1 34 HELIX 15 AB6 ASN B 9 GLU B 18 1 10 HELIX 16 AB7 SER B 21 THR B 49 1 29 HELIX 17 AB8 ILE B 50 VAL B 53 5 4 HELIX 18 AB9 ASP B 54 LYS B 56 5 3 HELIX 19 AC1 PHE B 57 SER B 85 1 29 HELIX 20 AC2 PRO B 99 ASP B 102 5 4 HELIX 21 AC3 ASN B 106 ILE B 124 1 19 HELIX 22 AC4 LEU B 125 VAL B 127 5 3 HELIX 23 AC5 LYS B 134 GLN B 157 1 24 HELIX 24 AC6 PHE B 158 GLU B 160 5 3 HELIX 25 AC7 ASN B 163 GLU B 194 1 32 HELIX 26 AC8 SER B 197 MET B 224 1 28 HELIX 27 AC9 PRO B 225 LEU B 227 5 3 HELIX 28 AD1 SER B 236 LEU B 269 1 34 HELIX 29 AD2 ASN C 9 GLU C 18 1 10 HELIX 30 AD3 SER C 21 THR C 49 1 29 HELIX 31 AD4 ILE C 50 VAL C 53 5 4 HELIX 32 AD5 ASP C 54 LYS C 56 5 3 HELIX 33 AD6 PHE C 57 SER C 85 1 29 HELIX 34 AD7 PRO C 99 ASP C 102 5 4 HELIX 35 AD8 ASN C 106 ILE C 124 1 19 HELIX 36 AD9 LEU C 125 VAL C 127 5 3 HELIX 37 AE1 LYS C 134 GLN C 157 1 24 HELIX 38 AE2 PHE C 158 GLU C 160 5 3 HELIX 39 AE3 ASN C 163 GLU C 194 1 32 HELIX 40 AE4 SER C 197 MET C 224 1 28 HELIX 41 AE5 PRO C 225 LEU C 227 5 3 HELIX 42 AE6 SER C 236 LEU C 269 1 34 HELIX 43 AE7 ASN D 9 GLU D 18 1 10 HELIX 44 AE8 SER D 21 THR D 49 1 29 HELIX 45 AE9 ILE D 50 VAL D 53 5 4 HELIX 46 AF1 ASP D 54 LYS D 56 5 3 HELIX 47 AF2 PHE D 57 SER D 85 1 29 HELIX 48 AF3 PRO D 99 ASP D 102 5 4 HELIX 49 AF4 ASN D 106 ILE D 124 1 19 HELIX 50 AF5 LEU D 125 VAL D 127 5 3 HELIX 51 AF6 LYS D 134 GLN D 157 1 24 HELIX 52 AF7 PHE D 158 GLU D 160 5 3 HELIX 53 AF8 ASN D 163 GLU D 194 1 32 HELIX 54 AF9 SER D 197 MET D 224 1 28 HELIX 55 AG1 PRO D 225 LEU D 227 5 3 HELIX 56 AG2 SER D 236 LEU D 269 1 34 HELIX 57 AG3 ASN E 9 GLU E 18 1 10 HELIX 58 AG4 SER E 21 THR E 49 1 29 HELIX 59 AG5 ILE E 50 VAL E 53 5 4 HELIX 60 AG6 ASP E 54 LYS E 56 5 3 HELIX 61 AG7 PHE E 57 SER E 85 1 29 HELIX 62 AG8 PRO E 99 ASP E 102 5 4 HELIX 63 AG9 ASN E 106 ILE E 124 1 19 HELIX 64 AH1 LEU E 125 VAL E 127 5 3 HELIX 65 AH2 LYS E 134 GLN E 157 1 24 HELIX 66 AH3 PHE E 158 GLU E 160 5 3 HELIX 67 AH4 ASN E 163 GLU E 194 1 32 HELIX 68 AH5 SER E 197 MET E 224 1 28 HELIX 69 AH6 PRO E 225 LEU E 227 5 3 HELIX 70 AH7 SER E 236 LEU E 269 1 34 SHEET 1 AA1 2 PHE A 86 ASN A 89 0 SHEET 2 AA1 2 ARG A 94 LEU A 97 -1 O PHE A 96 N THR A 87 SHEET 1 AA2 2 PHE B 86 ASN B 89 0 SHEET 2 AA2 2 ARG B 94 LEU B 97 -1 O PHE B 96 N THR B 87 SHEET 1 AA3 2 PHE C 86 ASN C 89 0 SHEET 2 AA3 2 ARG C 94 LEU C 97 -1 O PHE C 96 N THR C 87 SHEET 1 AA4 2 PHE D 86 ASN D 89 0 SHEET 2 AA4 2 ARG D 94 LEU D 97 -1 O PHE D 96 N THR D 87 SHEET 1 AA5 2 PHE E 86 ASN E 89 0 SHEET 2 AA5 2 ARG E 94 LEU E 97 -1 O PHE E 96 N THR E 87 LINK NZ LYS A 255 C15 RET A 309 1555 1555 1.45 LINK NZ LYS B 255 C15 RET B 309 1555 1555 1.45 LINK NZ LYS C 255 C15 RET C 310 1555 1555 1.46 LINK NZ LYS D 255 C15 RET D 308 1555 1555 1.46 LINK NZ LYS E 255 C15 RET E 310 1555 1555 1.46 LINK OH TYR A 25 NA NA A 308 1555 1555 2.39 LINK O THR A 83 NA NA A 308 1555 1555 2.39 LINK O PHE A 86 NA NA A 308 1555 1555 2.65 LINK OD1 ASP A 102 NA NA E 309 1555 1555 2.48 LINK NA NA A 308 O HOH A 413 1555 1555 2.19 LINK NA NA A 308 OD1 ASP B 102 1555 1555 2.40 LINK NA NA A 308 OD2 ASP B 102 1555 1555 3.05 LINK OH TYR B 25 NA NA B 308 1555 1555 2.55 LINK O THR B 83 NA NA B 308 1555 1555 2.37 LINK O PHE B 86 NA NA B 308 1555 1555 2.43 LINK NA NA B 308 O HOH B 416 1555 1555 2.33 LINK NA NA B 308 OD1 ASP C 102 1555 1555 2.45 LINK OH TYR C 25 NA NA C 309 1555 1555 2.36 LINK O THR C 83 NA NA C 309 1555 1555 2.40 LINK O PHE C 86 NA NA C 309 1555 1555 2.39 LINK NA NA C 309 O HOH C 421 1555 1555 2.32 LINK NA NA C 309 OD1 ASP D 102 1555 1555 2.47 LINK OH TYR D 25 NA NA D 307 1555 1555 2.69 LINK O THR D 83 NA NA D 307 1555 1555 2.35 LINK O PHE D 86 NA NA D 307 1555 1555 2.53 LINK NA NA D 307 O HOH D 403 1555 1555 2.43 LINK NA NA D 307 OD1 ASP E 102 1555 1555 2.43 LINK OH TYR E 25 NA NA E 309 1555 1555 2.65 LINK O THR E 83 NA NA E 309 1555 1555 2.39 LINK O PHE E 86 NA NA E 309 1555 1555 2.59 SITE 1 AC1 2 TYR A 45 PHE B 122 SITE 1 AC2 1 ILE A 47 SITE 1 AC3 3 TYR A 159 ASN A 163 TRP A 170 SITE 1 AC4 2 ALA A 172 SER A 175 SITE 1 AC5 1 HIS A 180 SITE 1 AC6 3 ARG A 139 ASN E 264 LFA E 301 SITE 1 AC7 5 TYR A 25 THR A 83 PHE A 86 HOH A 413 SITE 2 AC7 5 ASP B 102 SITE 1 AC8 11 TRP A 113 LEU A 120 MET A 149 GLY A 153 SITE 2 AC8 11 SER A 174 PHE A 178 TRP A 215 TYR A 218 SITE 3 AC8 11 TYR A 222 SER A 254 LYS A 255 SITE 1 AC9 3 TYR B 45 LEU C 114 LFA C 305 SITE 1 AD1 3 VAL A 260 ARG B 139 LFA B 306 SITE 1 AD2 3 TYR B 159 ASN B 163 TRP B 170 SITE 1 AD3 2 LEU B 168 SER B 175 SITE 1 AD4 3 GLN B 141 ALA B 176 HIS B 180 SITE 1 AD5 1 LFA B 302 SITE 1 AD6 1 ILE B 47 SITE 1 AD7 5 TYR B 25 THR B 83 PHE B 86 HOH B 416 SITE 2 AD7 5 ASP C 102 SITE 1 AD8 3 TYR C 45 ASN C 264 LEU D 114 SITE 1 AD9 3 TYR C 159 ASN C 163 TRP C 170 SITE 1 AE1 2 PHE C 177 HIS C 180 SITE 1 AE2 2 GLY C 171 SER C 175 SITE 1 AE3 3 LFA B 301 PRO C 118 ARG C 139 SITE 1 AE4 2 THR C 165 VAL C 169 SITE 1 AE5 1 ILE D 47 SITE 1 AE6 5 TYR C 25 THR C 83 PHE C 86 HOH C 421 SITE 2 AE6 5 ASP D 102 SITE 1 AE7 2 TYR D 45 LEU E 114 SITE 1 AE8 3 TYR D 159 ASN D 163 TRP D 170 SITE 1 AE9 2 LEU D 168 SER D 175 SITE 1 AF1 3 PHE D 135 ARG D 139 TRP D 143 SITE 1 AF2 1 ASN D 140 SITE 1 AF3 1 PHE E 72 SITE 1 AF4 5 TYR D 25 THR D 83 PHE D 86 HOH D 403 SITE 2 AF4 5 ASP E 102 SITE 1 AF5 2 LFA A 306 TYR E 45 SITE 1 AF6 3 TYR E 159 ASN E 163 TRP E 170 SITE 1 AF7 3 LEU E 168 ALA E 172 SER E 175 SITE 1 AF8 2 ASN E 163 TRP E 170 SITE 1 AF9 1 ARG E 139 SITE 1 AG1 4 ASP A 102 TYR E 25 THR E 83 PHE E 86 SITE 1 AG2 20 VAL B 67 MET B 68 TRP B 113 ASP B 116 SITE 2 AG2 20 LEU B 120 MET B 149 GLY B 153 SER B 174 SITE 3 AG2 20 PHE B 178 TRP B 215 TYR B 218 TYR B 222 SITE 4 AG2 20 ASP B 251 VAL B 252 SER B 253 SER B 254 SITE 5 AG2 20 VAL B 256 ILE B 257 GLY B 259 HOH B 404 SITE 1 AG3 20 VAL C 67 MET C 68 TRP C 113 ASP C 116 SITE 2 AG3 20 LEU C 120 MET C 149 GLY C 153 SER C 174 SITE 3 AG3 20 PHE C 178 TRP C 215 TYR C 218 TYR C 222 SITE 4 AG3 20 ASP C 251 VAL C 252 SER C 253 SER C 254 SITE 5 AG3 20 VAL C 256 ILE C 257 GLY C 259 HOH C 409 SITE 1 AG4 20 VAL D 67 MET D 68 TRP D 113 ASP D 116 SITE 2 AG4 20 LEU D 120 MET D 149 GLY D 153 SER D 174 SITE 3 AG4 20 PHE D 178 TRP D 215 TYR D 218 TYR D 222 SITE 4 AG4 20 ASP D 251 VAL D 252 SER D 253 SER D 254 SITE 5 AG4 20 VAL D 256 ILE D 257 GLY D 259 HOH D 409 SITE 1 AG5 20 VAL E 67 MET E 68 TRP E 113 ASP E 116 SITE 2 AG5 20 LEU E 120 MET E 149 GLY E 153 SER E 174 SITE 3 AG5 20 PHE E 178 TRP E 215 TYR E 218 TYR E 222 SITE 4 AG5 20 ASP E 251 VAL E 252 SER E 253 SER E 254 SITE 5 AG5 20 VAL E 256 ILE E 257 GLY E 259 HOH E 412 CRYST1 130.241 241.392 135.109 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007401 0.00000