data_6RF7 # _entry.id 6RF7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6RF7 pdb_00006rf7 10.2210/pdb6rf7/pdb WWPDB D_1292101837 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-24 2 'Structure model' 1 1 2024-01-24 3 'Structure model' 1 2 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' refine 6 3 'Structure model' pdbx_entry_details 7 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_refine.pdbx_diffrn_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RF7 _pdbx_database_status.recvd_initial_deposition_date 2019-04-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kovalev, K.' 1 ? 'Polovinkin, V.' 2 ? 'Gushchin, I.' 3 ? 'Borshchevskiy, V.' 4 ? 'Gordeliy, V.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first eaav2671 _citation.page_last eaav2671 _citation.title 'Structure and mechanisms of sodium-pumping KR2 rhodopsin.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.aav2671 _citation.pdbx_database_id_PubMed 30989112 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kovalev, K.' 1 0000-0002-2229-181X primary 'Polovinkin, V.' 2 0000-0002-3630-5565 primary 'Gushchin, I.' 3 0000-0002-5348-6070 primary 'Alekseev, A.' 4 0000-0001-8990-1662 primary 'Shevchenko, V.' 5 0000-0001-8478-3839 primary 'Borshchevskiy, V.' 6 0000-0003-4398-9712 primary 'Astashkin, R.' 7 0000-0001-9065-8225 primary 'Balandin, T.' 8 0000-0001-8471-8041 primary 'Bratanov, D.' 9 ? primary 'Vaganova, S.' 10 ? primary 'Popov, A.' 11 0000-0002-3058-8912 primary 'Chupin, V.' 12 ? primary 'Buldt, G.' 13 ? primary 'Bamberg, E.' 14 0000-0002-5411-6207 primary 'Gordeliy, V.' 15 0000-0001-5782-5896 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sodium pumping rhodopsin' 32611.580 1 ? ? ? ? 2 non-polymer syn EICOSANE 282.547 5 ? ? ? ? 3 non-polymer syn RETINAL 284.436 1 ? ? ? ? 4 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSSKVIYGVLLGNLAITLSKNKELVEANSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSSKVIYGVLLGNLAITLSKNKELVEANSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 EICOSANE LFA 3 RETINAL RET 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLN n 1 4 GLU n 1 5 LEU n 1 6 GLY n 1 7 ASN n 1 8 ALA n 1 9 ASN n 1 10 PHE n 1 11 GLU n 1 12 ASN n 1 13 PHE n 1 14 ILE n 1 15 GLY n 1 16 ALA n 1 17 THR n 1 18 GLU n 1 19 GLY n 1 20 PHE n 1 21 SER n 1 22 GLU n 1 23 ILE n 1 24 ALA n 1 25 TYR n 1 26 GLN n 1 27 PHE n 1 28 THR n 1 29 SER n 1 30 HIS n 1 31 ILE n 1 32 LEU n 1 33 THR n 1 34 LEU n 1 35 GLY n 1 36 TYR n 1 37 ALA n 1 38 VAL n 1 39 MET n 1 40 LEU n 1 41 ALA n 1 42 GLY n 1 43 LEU n 1 44 LEU n 1 45 TYR n 1 46 PHE n 1 47 ILE n 1 48 LEU n 1 49 THR n 1 50 ILE n 1 51 LYS n 1 52 ASN n 1 53 VAL n 1 54 ASP n 1 55 LYS n 1 56 LYS n 1 57 PHE n 1 58 GLN n 1 59 MET n 1 60 SER n 1 61 ASN n 1 62 ILE n 1 63 LEU n 1 64 SER n 1 65 ALA n 1 66 VAL n 1 67 VAL n 1 68 MET n 1 69 VAL n 1 70 SER n 1 71 ALA n 1 72 PHE n 1 73 LEU n 1 74 LEU n 1 75 LEU n 1 76 TYR n 1 77 ALA n 1 78 GLN n 1 79 ALA n 1 80 GLN n 1 81 ASN n 1 82 TRP n 1 83 THR n 1 84 SER n 1 85 SER n 1 86 PHE n 1 87 THR n 1 88 PHE n 1 89 ASN n 1 90 GLU n 1 91 GLU n 1 92 VAL n 1 93 GLY n 1 94 ARG n 1 95 TYR n 1 96 PHE n 1 97 LEU n 1 98 ASP n 1 99 PRO n 1 100 SER n 1 101 GLY n 1 102 ASP n 1 103 LEU n 1 104 PHE n 1 105 ASN n 1 106 ASN n 1 107 GLY n 1 108 TYR n 1 109 ARG n 1 110 TYR n 1 111 LEU n 1 112 ASN n 1 113 TRP n 1 114 LEU n 1 115 ILE n 1 116 ASP n 1 117 VAL n 1 118 PRO n 1 119 MET n 1 120 LEU n 1 121 LEU n 1 122 PHE n 1 123 GLN n 1 124 ILE n 1 125 LEU n 1 126 PHE n 1 127 VAL n 1 128 VAL n 1 129 SER n 1 130 LEU n 1 131 THR n 1 132 THR n 1 133 SER n 1 134 LYS n 1 135 PHE n 1 136 SER n 1 137 SER n 1 138 VAL n 1 139 ARG n 1 140 ASN n 1 141 GLN n 1 142 PHE n 1 143 TRP n 1 144 PHE n 1 145 SER n 1 146 GLY n 1 147 ALA n 1 148 MET n 1 149 MET n 1 150 ILE n 1 151 ILE n 1 152 THR n 1 153 GLY n 1 154 TYR n 1 155 ILE n 1 156 GLY n 1 157 GLN n 1 158 PHE n 1 159 TYR n 1 160 GLU n 1 161 VAL n 1 162 SER n 1 163 ASN n 1 164 LEU n 1 165 THR n 1 166 ALA n 1 167 PHE n 1 168 LEU n 1 169 VAL n 1 170 TRP n 1 171 GLY n 1 172 ALA n 1 173 ILE n 1 174 SER n 1 175 SER n 1 176 ALA n 1 177 PHE n 1 178 PHE n 1 179 PHE n 1 180 HIS n 1 181 ILE n 1 182 LEU n 1 183 TRP n 1 184 VAL n 1 185 MET n 1 186 LYS n 1 187 LYS n 1 188 VAL n 1 189 ILE n 1 190 ASN n 1 191 GLU n 1 192 GLY n 1 193 LYS n 1 194 GLU n 1 195 GLY n 1 196 ILE n 1 197 SER n 1 198 PRO n 1 199 ALA n 1 200 GLY n 1 201 GLN n 1 202 LYS n 1 203 ILE n 1 204 LEU n 1 205 SER n 1 206 ASN n 1 207 ILE n 1 208 TRP n 1 209 ILE n 1 210 LEU n 1 211 PHE n 1 212 LEU n 1 213 ILE n 1 214 SER n 1 215 TRP n 1 216 THR n 1 217 LEU n 1 218 TYR n 1 219 PRO n 1 220 GLY n 1 221 ALA n 1 222 TYR n 1 223 LEU n 1 224 MET n 1 225 PRO n 1 226 TYR n 1 227 LEU n 1 228 THR n 1 229 GLY n 1 230 VAL n 1 231 ASP n 1 232 GLY n 1 233 PHE n 1 234 LEU n 1 235 TYR n 1 236 SER n 1 237 GLU n 1 238 ASP n 1 239 GLY n 1 240 VAL n 1 241 MET n 1 242 ALA n 1 243 ARG n 1 244 GLN n 1 245 LEU n 1 246 VAL n 1 247 TYR n 1 248 THR n 1 249 ILE n 1 250 ALA n 1 251 ASP n 1 252 VAL n 1 253 SER n 1 254 SER n 1 255 LYS n 1 256 VAL n 1 257 ILE n 1 258 TYR n 1 259 GLY n 1 260 VAL n 1 261 LEU n 1 262 LEU n 1 263 GLY n 1 264 ASN n 1 265 LEU n 1 266 ALA n 1 267 ILE n 1 268 THR n 1 269 LEU n 1 270 SER n 1 271 LYS n 1 272 ASN n 1 273 LYS n 1 274 GLU n 1 275 LEU n 1 276 VAL n 1 277 GLU n 1 278 ALA n 1 279 ASN n 1 280 SER n 1 281 LEU n 1 282 GLU n 1 283 HIS n 1 284 HIS n 1 285 HIS n 1 286 HIS n 1 287 HIS n 1 288 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 288 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NaR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dokdonia eikasta' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 308116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LFA non-polymer . EICOSANE 'LIPID FRAGMENT' 'C20 H42' 282.547 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 TRP 113 113 113 TRP TRP A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 TRP 143 143 143 TRP TRP A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 GLN 157 157 157 GLN GLN A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 ASN 163 163 163 ASN ASN A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 PHE 178 178 178 PHE PHE A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 HIS 180 180 180 HIS HIS A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 TRP 183 183 183 TRP TRP A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 MET 185 185 185 MET MET A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 TRP 208 208 208 TRP TRP A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 TRP 215 215 215 TRP TRP A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 PRO 219 219 219 PRO PRO A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 MET 224 224 224 MET MET A . n A 1 225 PRO 225 225 225 PRO PRO A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 MET 241 241 241 MET MET A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 TYR 247 247 247 TYR TYR A . n A 1 248 THR 248 248 248 THR THR A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 VAL 252 252 252 VAL VAL A . n A 1 253 SER 253 253 253 SER SER A . n A 1 254 SER 254 254 254 SER SER A . n A 1 255 LYS 255 255 255 LYS LYR A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 ASN 264 264 264 ASN ASN A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 ASN 272 272 ? ? ? A . n A 1 273 LYS 273 273 ? ? ? A . n A 1 274 GLU 274 274 ? ? ? A . n A 1 275 LEU 275 275 ? ? ? A . n A 1 276 VAL 276 276 ? ? ? A . n A 1 277 GLU 277 277 ? ? ? A . n A 1 278 ALA 278 278 ? ? ? A . n A 1 279 ASN 279 279 ? ? ? A . n A 1 280 SER 280 280 ? ? ? A . n A 1 281 LEU 281 281 ? ? ? A . n A 1 282 GLU 282 282 ? ? ? A . n A 1 283 HIS 283 283 ? ? ? A . n A 1 284 HIS 284 284 ? ? ? A . n A 1 285 HIS 285 285 ? ? ? A . n A 1 286 HIS 286 286 ? ? ? A . n A 1 287 HIS 287 287 ? ? ? A . n A 1 288 HIS 288 288 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA 1 301 1 LFA LFA A . C 2 LFA 1 302 2 LFA LFA A . D 2 LFA 1 303 3 LFA LFA A . E 2 LFA 1 304 4 LFA LFA A . F 2 LFA 1 305 5 LFA LFA A . G 3 RET 1 306 255 RET LYR A . H 4 HOH 1 401 12 HOH HOH A . H 4 HOH 2 402 11 HOH HOH A . H 4 HOH 3 403 4 HOH HOH A . H 4 HOH 4 404 7 HOH HOH A . H 4 HOH 5 405 1 HOH HOH A . H 4 HOH 6 406 5 HOH HOH A . H 4 HOH 7 407 10 HOH HOH A . H 4 HOH 8 408 9 HOH HOH A . H 4 HOH 9 409 2 HOH HOH A . H 4 HOH 10 410 13 HOH HOH A . H 4 HOH 11 411 6 HOH HOH A . H 4 HOH 12 412 8 HOH HOH A . H 4 HOH 13 413 3 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 90 ? OE1 ? A GLU 90 OE1 2 1 Y 1 A GLU 90 ? OE2 ? A GLU 90 OE2 3 1 Y 1 A LYS 134 ? NZ ? A LYS 134 NZ 4 1 Y 1 A LYS 187 ? CE ? A LYS 187 CE 5 1 Y 1 A LYS 187 ? NZ ? A LYS 187 NZ 6 1 Y 1 A LYS 202 ? CG ? A LYS 202 CG 7 1 Y 1 A LYS 202 ? CD ? A LYS 202 CD 8 1 Y 1 A LYS 202 ? CE ? A LYS 202 CE 9 1 Y 1 A LYS 202 ? NZ ? A LYS 202 NZ 10 1 Y 1 A ASP 231 ? CG ? A ASP 231 CG 11 1 Y 1 A ASP 231 ? OD1 ? A ASP 231 OD1 12 1 Y 1 A ASP 231 ? OD2 ? A ASP 231 OD2 13 1 N 1 A LFA 301 ? C15 ? B LFA 1 C15 14 1 N 1 A LFA 301 ? C16 ? B LFA 1 C16 15 1 N 1 A LFA 301 ? C17 ? B LFA 1 C17 16 1 N 1 A LFA 301 ? C18 ? B LFA 1 C18 17 1 N 1 A LFA 301 ? C19 ? B LFA 1 C19 18 1 N 1 A LFA 301 ? C20 ? B LFA 1 C20 19 1 N 1 A LFA 302 ? C1 ? C LFA 1 C1 20 1 N 1 A LFA 302 ? C2 ? C LFA 1 C2 21 1 N 1 A LFA 302 ? C3 ? C LFA 1 C3 22 1 N 1 A LFA 302 ? C4 ? C LFA 1 C4 23 1 N 1 A LFA 302 ? C5 ? C LFA 1 C5 24 1 N 1 A LFA 302 ? C6 ? C LFA 1 C6 25 1 N 1 A LFA 302 ? C7 ? C LFA 1 C7 26 1 N 1 A LFA 303 ? C10 ? D LFA 1 C10 27 1 N 1 A LFA 303 ? C11 ? D LFA 1 C11 28 1 N 1 A LFA 303 ? C12 ? D LFA 1 C12 29 1 N 1 A LFA 303 ? C13 ? D LFA 1 C13 30 1 N 1 A LFA 303 ? C14 ? D LFA 1 C14 31 1 N 1 A LFA 303 ? C15 ? D LFA 1 C15 32 1 N 1 A LFA 303 ? C16 ? D LFA 1 C16 33 1 N 1 A LFA 303 ? C17 ? D LFA 1 C17 34 1 N 1 A LFA 303 ? C18 ? D LFA 1 C18 35 1 N 1 A LFA 303 ? C19 ? D LFA 1 C19 36 1 N 1 A LFA 303 ? C20 ? D LFA 1 C20 37 1 N 1 A LFA 304 ? C9 ? E LFA 1 C9 38 1 N 1 A LFA 304 ? C10 ? E LFA 1 C10 39 1 N 1 A LFA 304 ? C11 ? E LFA 1 C11 40 1 N 1 A LFA 304 ? C12 ? E LFA 1 C12 41 1 N 1 A LFA 304 ? C13 ? E LFA 1 C13 42 1 N 1 A LFA 304 ? C14 ? E LFA 1 C14 43 1 N 1 A LFA 304 ? C15 ? E LFA 1 C15 44 1 N 1 A LFA 304 ? C16 ? E LFA 1 C16 45 1 N 1 A LFA 304 ? C17 ? E LFA 1 C17 46 1 N 1 A LFA 304 ? C18 ? E LFA 1 C18 47 1 N 1 A LFA 304 ? C19 ? E LFA 1 C19 48 1 N 1 A LFA 304 ? C20 ? E LFA 1 C20 49 1 N 1 A LFA 305 ? C11 ? F LFA 1 C11 50 1 N 1 A LFA 305 ? C12 ? F LFA 1 C12 51 1 N 1 A LFA 305 ? C13 ? F LFA 1 C13 52 1 N 1 A LFA 305 ? C14 ? F LFA 1 C14 53 1 N 1 A LFA 305 ? C15 ? F LFA 1 C15 54 1 N 1 A LFA 305 ? C16 ? F LFA 1 C16 55 1 N 1 A LFA 305 ? C17 ? F LFA 1 C17 56 1 N 1 A LFA 305 ? C18 ? F LFA 1 C18 57 1 N 1 A LFA 305 ? C19 ? F LFA 1 C19 58 1 N 1 A LFA 305 ? C20 ? F LFA 1 C20 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0230 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6RF7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.598 _cell.length_a_esd ? _cell.length_b 82.248 _cell.length_b_esd ? _cell.length_c 234.183 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RF7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.0 M Sodium Malonate, pH 4.3' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6RF7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 40.700 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14043 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.800 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.120 _reflns.pdbx_Rpim_I_all 0.053 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 68030 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.500 2.600 ? ? 7857 ? ? ? 1557 99.900 ? ? ? ? 1.537 ? ? ? ? ? ? ? ? 5.000 ? ? ? 0.900 1.716 0.750 ? 1 1 0.560 ? 9.010 40.700 ? ? 1385 ? ? ? 341 96.600 ? ? ? ? 0.023 ? ? ? ? ? ? ? ? 4.100 ? ? ? 33.800 0.027 0.013 ? 2 1 0.999 ? # _refine.aniso_B[1][1] 2.5100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 4.1900 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -6.7000 _refine.B_iso_max 133.680 _refine.B_iso_mean 61.5890 _refine.B_iso_min 34.210 _refine.correlation_coeff_Fo_to_Fc 0.9470 _refine.correlation_coeff_Fo_to_Fc_free 0.9120 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RF7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6000 _refine.ls_d_res_low 20.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11878 _refine.ls_number_reflns_R_free 598 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0100 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2240 _refine.ls_R_factor_R_free 0.2711 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2215 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4XTL _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.5040 _refine.pdbx_overall_ESU_R_Free 0.3110 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 14.7880 _refine.overall_SU_ML 0.2960 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.6000 _refine_hist.d_res_low 20.0000 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 2191 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 265 _refine_hist.pdbx_B_iso_mean_ligand 74.38 _refine_hist.pdbx_B_iso_mean_solvent 58.27 _refine_hist.pdbx_number_atoms_protein 2124 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 0.014 2261 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.000 0.017 2132 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.504 1.658 3057 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.748 1.714 4924 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.996 5.000 268 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.367 22.917 96 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.002 15.000 343 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 27.962 15.000 5 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.026 0.200 284 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 2470 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 507 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.6000 _refine_ls_shell.d_res_low 2.6660 _refine_ls_shell.number_reflns_all 892 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.number_reflns_R_work 859 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2790 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3400 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6RF7 _struct.title 'Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 8.9' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RF7 _struct_keywords.text 'light-driven sodium pump, ion translocation, retinal, rhodopsin, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code N0DKS8_9FLAO _struct_ref.pdbx_db_accession N0DKS8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSSKVIYGVLLGNLAITLSKNKELVEANS ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6RF7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 280 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession N0DKS8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6RF7 LEU A 281 ? UNP N0DKS8 ? ? 'expression tag' 281 1 1 6RF7 GLU A 282 ? UNP N0DKS8 ? ? 'expression tag' 282 2 1 6RF7 HIS A 283 ? UNP N0DKS8 ? ? 'expression tag' 283 3 1 6RF7 HIS A 284 ? UNP N0DKS8 ? ? 'expression tag' 284 4 1 6RF7 HIS A 285 ? UNP N0DKS8 ? ? 'expression tag' 285 5 1 6RF7 HIS A 286 ? UNP N0DKS8 ? ? 'expression tag' 286 6 1 6RF7 HIS A 287 ? UNP N0DKS8 ? ? 'expression tag' 287 7 1 6RF7 HIS A 288 ? UNP N0DKS8 ? ? 'expression tag' 288 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2610 ? 1 MORE 17 ? 1 'SSA (A^2)' 11610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 9 ? THR A 17 ? ASN A 9 THR A 17 1 ? 9 HELX_P HELX_P2 AA2 SER A 21 ? THR A 49 ? SER A 21 THR A 49 1 ? 29 HELX_P HELX_P3 AA3 ILE A 50 ? VAL A 53 ? ILE A 50 VAL A 53 5 ? 4 HELX_P HELX_P4 AA4 ASP A 54 ? LYS A 56 ? ASP A 54 LYS A 56 5 ? 3 HELX_P HELX_P5 AA5 PHE A 57 ? SER A 85 ? PHE A 57 SER A 85 1 ? 29 HELX_P HELX_P6 AA6 ASN A 106 ? ILE A 124 ? ASN A 106 ILE A 124 1 ? 19 HELX_P HELX_P7 AA7 LEU A 125 ? VAL A 127 ? LEU A 125 VAL A 127 5 ? 3 HELX_P HELX_P8 AA8 LYS A 134 ? PHE A 158 ? LYS A 134 PHE A 158 1 ? 25 HELX_P HELX_P9 AA9 ASN A 163 ? GLU A 194 ? ASN A 163 GLU A 194 1 ? 32 HELX_P HELX_P10 AB1 SER A 197 ? MET A 224 ? SER A 197 MET A 224 1 ? 28 HELX_P HELX_P11 AB2 PRO A 225 ? LEU A 227 ? PRO A 225 LEU A 227 5 ? 3 HELX_P HELX_P12 AB3 SER A 236 ? LYS A 271 ? SER A 236 LYS A 271 1 ? 36 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 306 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.448 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id RET _pdbx_modification_feature.label_asym_id G _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 255 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id RET _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 306 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 255 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C15 _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id RET _pdbx_modification_feature.type Retinoylation _pdbx_modification_feature.category Lipid/lipid-like # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 86 ? ASN A 89 ? PHE A 86 ASN A 89 AA1 2 ARG A 94 ? LEU A 97 ? ARG A 94 LEU A 97 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id THR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 87 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id THR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 87 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 96 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 96 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LFA 301 ? 1 'binding site for residue LFA A 301' AC2 Software A LFA 302 ? 2 'binding site for residue LFA A 302' AC3 Software A LFA 303 ? 2 'binding site for residue LFA A 303' AC4 Software A LFA 304 ? 3 'binding site for residue LFA A 304' AC5 Software A LFA 305 ? 2 'binding site for residue LFA A 305' AC6 Software A RET 306 ? 11 'binding site for residue RET A 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ASN A 264 ? ASN A 264 . ? 1_555 ? 2 AC2 2 TYR A 45 ? TYR A 45 . ? 1_555 ? 3 AC2 2 ASN A 264 ? ASN A 264 . ? 1_555 ? 4 AC3 2 GLY A 107 ? GLY A 107 . ? 1_555 ? 5 AC3 2 TYR A 154 ? TYR A 154 . ? 1_555 ? 6 AC4 3 PHE A 179 ? PHE A 179 . ? 1_555 ? 7 AC4 3 TRP A 183 ? TRP A 183 . ? 1_555 ? 8 AC4 3 LYS A 186 ? LYS A 186 . ? 1_555 ? 9 AC5 2 TYR A 76 ? TYR A 76 . ? 1_555 ? 10 AC5 2 TYR A 76 ? TYR A 76 . ? 2_555 ? 11 AC6 11 TRP A 113 ? TRP A 113 . ? 1_555 ? 12 AC6 11 LEU A 120 ? LEU A 120 . ? 1_555 ? 13 AC6 11 MET A 149 ? MET A 149 . ? 1_555 ? 14 AC6 11 GLY A 171 ? GLY A 171 . ? 1_555 ? 15 AC6 11 SER A 174 ? SER A 174 . ? 1_555 ? 16 AC6 11 PHE A 178 ? PHE A 178 . ? 1_555 ? 17 AC6 11 TRP A 215 ? TRP A 215 . ? 1_555 ? 18 AC6 11 TYR A 218 ? TYR A 218 . ? 1_555 ? 19 AC6 11 TYR A 222 ? TYR A 222 . ? 1_555 ? 20 AC6 11 SER A 254 ? SER A 254 . ? 1_555 ? 21 AC6 11 LYS A 255 ? LYS A 255 . ? 1_555 ? # _pdbx_entry_details.entry_id 6RF7 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 228 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 401 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CE _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 134 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLY _pdbx_validate_symm_contact.auth_seq_id_2 195 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_455 _pdbx_validate_symm_contact.dist 2.00 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 8 ? ? -58.96 97.05 2 1 THR A 17 ? ? -101.66 -87.61 3 1 LEU A 103 ? ? 75.78 151.64 4 1 THR A 131 ? ? -108.58 -70.26 5 1 SER A 236 ? ? -178.18 -166.19 6 1 LYS A 255 ? ? -107.16 -62.48 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 413 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A ASN 272 ? A ASN 272 8 1 Y 1 A LYS 273 ? A LYS 273 9 1 Y 1 A GLU 274 ? A GLU 274 10 1 Y 1 A LEU 275 ? A LEU 275 11 1 Y 1 A VAL 276 ? A VAL 276 12 1 Y 1 A GLU 277 ? A GLU 277 13 1 Y 1 A ALA 278 ? A ALA 278 14 1 Y 1 A ASN 279 ? A ASN 279 15 1 Y 1 A SER 280 ? A SER 280 16 1 Y 1 A LEU 281 ? A LEU 281 17 1 Y 1 A GLU 282 ? A GLU 282 18 1 Y 1 A HIS 283 ? A HIS 283 19 1 Y 1 A HIS 284 ? A HIS 284 20 1 Y 1 A HIS 285 ? A HIS 285 21 1 Y 1 A HIS 286 ? A HIS 286 22 1 Y 1 A HIS 287 ? A HIS 287 23 1 Y 1 A HIS 288 ? A HIS 288 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LFA C1 C N N 191 LFA C2 C N N 192 LFA C3 C N N 193 LFA C4 C N N 194 LFA C5 C N N 195 LFA C6 C N N 196 LFA C7 C N N 197 LFA C8 C N N 198 LFA C9 C N N 199 LFA C10 C N N 200 LFA C11 C N N 201 LFA C12 C N N 202 LFA C13 C N N 203 LFA C14 C N N 204 LFA C15 C N N 205 LFA C16 C N N 206 LFA C17 C N N 207 LFA C18 C N N 208 LFA C19 C N N 209 LFA C20 C N N 210 LFA H11 H N N 211 LFA H12 H N N 212 LFA H13 H N N 213 LFA H21 H N N 214 LFA H22 H N N 215 LFA H31 H N N 216 LFA H32 H N N 217 LFA H41 H N N 218 LFA H42 H N N 219 LFA H51 H N N 220 LFA H52 H N N 221 LFA H61 H N N 222 LFA H62 H N N 223 LFA H71 H N N 224 LFA H72 H N N 225 LFA H81 H N N 226 LFA H82 H N N 227 LFA H91 H N N 228 LFA H92 H N N 229 LFA H101 H N N 230 LFA H102 H N N 231 LFA H111 H N N 232 LFA H112 H N N 233 LFA H121 H N N 234 LFA H122 H N N 235 LFA H131 H N N 236 LFA H132 H N N 237 LFA H141 H N N 238 LFA H142 H N N 239 LFA H151 H N N 240 LFA H152 H N N 241 LFA H161 H N N 242 LFA H162 H N N 243 LFA H171 H N N 244 LFA H172 H N N 245 LFA H181 H N N 246 LFA H182 H N N 247 LFA H191 H N N 248 LFA H192 H N N 249 LFA H201 H N N 250 LFA H202 H N N 251 LFA H203 H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 PHE N N N N 298 PHE CA C N S 299 PHE C C N N 300 PHE O O N N 301 PHE CB C N N 302 PHE CG C Y N 303 PHE CD1 C Y N 304 PHE CD2 C Y N 305 PHE CE1 C Y N 306 PHE CE2 C Y N 307 PHE CZ C Y N 308 PHE OXT O N N 309 PHE H H N N 310 PHE H2 H N N 311 PHE HA H N N 312 PHE HB2 H N N 313 PHE HB3 H N N 314 PHE HD1 H N N 315 PHE HD2 H N N 316 PHE HE1 H N N 317 PHE HE2 H N N 318 PHE HZ H N N 319 PHE HXT H N N 320 PRO N N N N 321 PRO CA C N S 322 PRO C C N N 323 PRO O O N N 324 PRO CB C N N 325 PRO CG C N N 326 PRO CD C N N 327 PRO OXT O N N 328 PRO H H N N 329 PRO HA H N N 330 PRO HB2 H N N 331 PRO HB3 H N N 332 PRO HG2 H N N 333 PRO HG3 H N N 334 PRO HD2 H N N 335 PRO HD3 H N N 336 PRO HXT H N N 337 RET C1 C N N 338 RET C2 C N N 339 RET C3 C N N 340 RET C4 C N N 341 RET C5 C N N 342 RET C6 C N N 343 RET C7 C N N 344 RET C8 C N N 345 RET C9 C N N 346 RET C10 C N N 347 RET C11 C N N 348 RET C12 C N N 349 RET C13 C N N 350 RET C14 C N N 351 RET C15 C N N 352 RET O1 O N N 353 RET C16 C N N 354 RET C17 C N N 355 RET C18 C N N 356 RET C19 C N N 357 RET C20 C N N 358 RET H21 H N N 359 RET H22 H N N 360 RET H31 H N N 361 RET H32 H N N 362 RET H41 H N N 363 RET H42 H N N 364 RET H7 H N N 365 RET H8 H N N 366 RET H10 H N N 367 RET H11 H N N 368 RET H12 H N N 369 RET H14 H N N 370 RET H15 H N N 371 RET H161 H N N 372 RET H162 H N N 373 RET H163 H N N 374 RET H171 H N N 375 RET H172 H N N 376 RET H173 H N N 377 RET H181 H N N 378 RET H182 H N N 379 RET H183 H N N 380 RET H191 H N N 381 RET H192 H N N 382 RET H193 H N N 383 RET H201 H N N 384 RET H202 H N N 385 RET H203 H N N 386 SER N N N N 387 SER CA C N S 388 SER C C N N 389 SER O O N N 390 SER CB C N N 391 SER OG O N N 392 SER OXT O N N 393 SER H H N N 394 SER H2 H N N 395 SER HA H N N 396 SER HB2 H N N 397 SER HB3 H N N 398 SER HG H N N 399 SER HXT H N N 400 THR N N N N 401 THR CA C N S 402 THR C C N N 403 THR O O N N 404 THR CB C N R 405 THR OG1 O N N 406 THR CG2 C N N 407 THR OXT O N N 408 THR H H N N 409 THR H2 H N N 410 THR HA H N N 411 THR HB H N N 412 THR HG1 H N N 413 THR HG21 H N N 414 THR HG22 H N N 415 THR HG23 H N N 416 THR HXT H N N 417 TRP N N N N 418 TRP CA C N S 419 TRP C C N N 420 TRP O O N N 421 TRP CB C N N 422 TRP CG C Y N 423 TRP CD1 C Y N 424 TRP CD2 C Y N 425 TRP NE1 N Y N 426 TRP CE2 C Y N 427 TRP CE3 C Y N 428 TRP CZ2 C Y N 429 TRP CZ3 C Y N 430 TRP CH2 C Y N 431 TRP OXT O N N 432 TRP H H N N 433 TRP H2 H N N 434 TRP HA H N N 435 TRP HB2 H N N 436 TRP HB3 H N N 437 TRP HD1 H N N 438 TRP HE1 H N N 439 TRP HE3 H N N 440 TRP HZ2 H N N 441 TRP HZ3 H N N 442 TRP HH2 H N N 443 TRP HXT H N N 444 TYR N N N N 445 TYR CA C N S 446 TYR C C N N 447 TYR O O N N 448 TYR CB C N N 449 TYR CG C Y N 450 TYR CD1 C Y N 451 TYR CD2 C Y N 452 TYR CE1 C Y N 453 TYR CE2 C Y N 454 TYR CZ C Y N 455 TYR OH O N N 456 TYR OXT O N N 457 TYR H H N N 458 TYR H2 H N N 459 TYR HA H N N 460 TYR HB2 H N N 461 TYR HB3 H N N 462 TYR HD1 H N N 463 TYR HD2 H N N 464 TYR HE1 H N N 465 TYR HE2 H N N 466 TYR HH H N N 467 TYR HXT H N N 468 VAL N N N N 469 VAL CA C N S 470 VAL C C N N 471 VAL O O N N 472 VAL CB C N N 473 VAL CG1 C N N 474 VAL CG2 C N N 475 VAL OXT O N N 476 VAL H H N N 477 VAL H2 H N N 478 VAL HA H N N 479 VAL HB H N N 480 VAL HG11 H N N 481 VAL HG12 H N N 482 VAL HG13 H N N 483 VAL HG21 H N N 484 VAL HG22 H N N 485 VAL HG23 H N N 486 VAL HXT H N N 487 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LFA C1 C2 sing N N 181 LFA C1 H11 sing N N 182 LFA C1 H12 sing N N 183 LFA C1 H13 sing N N 184 LFA C2 C3 sing N N 185 LFA C2 H21 sing N N 186 LFA C2 H22 sing N N 187 LFA C3 C4 sing N N 188 LFA C3 H31 sing N N 189 LFA C3 H32 sing N N 190 LFA C4 C5 sing N N 191 LFA C4 H41 sing N N 192 LFA C4 H42 sing N N 193 LFA C5 C6 sing N N 194 LFA C5 H51 sing N N 195 LFA C5 H52 sing N N 196 LFA C6 C7 sing N N 197 LFA C6 H61 sing N N 198 LFA C6 H62 sing N N 199 LFA C7 C8 sing N N 200 LFA C7 H71 sing N N 201 LFA C7 H72 sing N N 202 LFA C8 C9 sing N N 203 LFA C8 H81 sing N N 204 LFA C8 H82 sing N N 205 LFA C9 C10 sing N N 206 LFA C9 H91 sing N N 207 LFA C9 H92 sing N N 208 LFA C10 C11 sing N N 209 LFA C10 H101 sing N N 210 LFA C10 H102 sing N N 211 LFA C11 C12 sing N N 212 LFA C11 H111 sing N N 213 LFA C11 H112 sing N N 214 LFA C12 C13 sing N N 215 LFA C12 H121 sing N N 216 LFA C12 H122 sing N N 217 LFA C13 C14 sing N N 218 LFA C13 H131 sing N N 219 LFA C13 H132 sing N N 220 LFA C14 C15 sing N N 221 LFA C14 H141 sing N N 222 LFA C14 H142 sing N N 223 LFA C15 C16 sing N N 224 LFA C15 H151 sing N N 225 LFA C15 H152 sing N N 226 LFA C16 C17 sing N N 227 LFA C16 H161 sing N N 228 LFA C16 H162 sing N N 229 LFA C17 C18 sing N N 230 LFA C17 H171 sing N N 231 LFA C17 H172 sing N N 232 LFA C18 C19 sing N N 233 LFA C18 H181 sing N N 234 LFA C18 H182 sing N N 235 LFA C19 C20 sing N N 236 LFA C19 H191 sing N N 237 LFA C19 H192 sing N N 238 LFA C20 H201 sing N N 239 LFA C20 H202 sing N N 240 LFA C20 H203 sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 RET C1 C2 sing N N 325 RET C1 C6 sing N N 326 RET C1 C16 sing N N 327 RET C1 C17 sing N N 328 RET C2 C3 sing N N 329 RET C2 H21 sing N N 330 RET C2 H22 sing N N 331 RET C3 C4 sing N N 332 RET C3 H31 sing N N 333 RET C3 H32 sing N N 334 RET C4 C5 sing N N 335 RET C4 H41 sing N N 336 RET C4 H42 sing N N 337 RET C5 C6 doub N N 338 RET C5 C18 sing N N 339 RET C6 C7 sing N N 340 RET C7 C8 doub N E 341 RET C7 H7 sing N N 342 RET C8 C9 sing N N 343 RET C8 H8 sing N N 344 RET C9 C10 doub N E 345 RET C9 C19 sing N N 346 RET C10 C11 sing N N 347 RET C10 H10 sing N N 348 RET C11 C12 doub N E 349 RET C11 H11 sing N N 350 RET C12 C13 sing N N 351 RET C12 H12 sing N N 352 RET C13 C14 doub N E 353 RET C13 C20 sing N N 354 RET C14 C15 sing N N 355 RET C14 H14 sing N N 356 RET C15 O1 doub N N 357 RET C15 H15 sing N N 358 RET C16 H161 sing N N 359 RET C16 H162 sing N N 360 RET C16 H163 sing N N 361 RET C17 H171 sing N N 362 RET C17 H172 sing N N 363 RET C17 H173 sing N N 364 RET C18 H181 sing N N 365 RET C18 H182 sing N N 366 RET C18 H183 sing N N 367 RET C19 H191 sing N N 368 RET C19 H192 sing N N 369 RET C19 H193 sing N N 370 RET C20 H201 sing N N 371 RET C20 H202 sing N N 372 RET C20 H203 sing N N 373 SER N CA sing N N 374 SER N H sing N N 375 SER N H2 sing N N 376 SER CA C sing N N 377 SER CA CB sing N N 378 SER CA HA sing N N 379 SER C O doub N N 380 SER C OXT sing N N 381 SER CB OG sing N N 382 SER CB HB2 sing N N 383 SER CB HB3 sing N N 384 SER OG HG sing N N 385 SER OXT HXT sing N N 386 THR N CA sing N N 387 THR N H sing N N 388 THR N H2 sing N N 389 THR CA C sing N N 390 THR CA CB sing N N 391 THR CA HA sing N N 392 THR C O doub N N 393 THR C OXT sing N N 394 THR CB OG1 sing N N 395 THR CB CG2 sing N N 396 THR CB HB sing N N 397 THR OG1 HG1 sing N N 398 THR CG2 HG21 sing N N 399 THR CG2 HG22 sing N N 400 THR CG2 HG23 sing N N 401 THR OXT HXT sing N N 402 TRP N CA sing N N 403 TRP N H sing N N 404 TRP N H2 sing N N 405 TRP CA C sing N N 406 TRP CA CB sing N N 407 TRP CA HA sing N N 408 TRP C O doub N N 409 TRP C OXT sing N N 410 TRP CB CG sing N N 411 TRP CB HB2 sing N N 412 TRP CB HB3 sing N N 413 TRP CG CD1 doub Y N 414 TRP CG CD2 sing Y N 415 TRP CD1 NE1 sing Y N 416 TRP CD1 HD1 sing N N 417 TRP CD2 CE2 doub Y N 418 TRP CD2 CE3 sing Y N 419 TRP NE1 CE2 sing Y N 420 TRP NE1 HE1 sing N N 421 TRP CE2 CZ2 sing Y N 422 TRP CE3 CZ3 doub Y N 423 TRP CE3 HE3 sing N N 424 TRP CZ2 CH2 doub Y N 425 TRP CZ2 HZ2 sing N N 426 TRP CZ3 CH2 sing Y N 427 TRP CZ3 HZ3 sing N N 428 TRP CH2 HH2 sing N N 429 TRP OXT HXT sing N N 430 TYR N CA sing N N 431 TYR N H sing N N 432 TYR N H2 sing N N 433 TYR CA C sing N N 434 TYR CA CB sing N N 435 TYR CA HA sing N N 436 TYR C O doub N N 437 TYR C OXT sing N N 438 TYR CB CG sing N N 439 TYR CB HB2 sing N N 440 TYR CB HB3 sing N N 441 TYR CG CD1 doub Y N 442 TYR CG CD2 sing Y N 443 TYR CD1 CE1 sing Y N 444 TYR CD1 HD1 sing N N 445 TYR CD2 CE2 doub Y N 446 TYR CD2 HD2 sing N N 447 TYR CE1 CZ doub Y N 448 TYR CE1 HE1 sing N N 449 TYR CE2 CZ sing Y N 450 TYR CE2 HE2 sing N N 451 TYR CZ OH sing N N 452 TYR OH HH sing N N 453 TYR OXT HXT sing N N 454 VAL N CA sing N N 455 VAL N H sing N N 456 VAL N H2 sing N N 457 VAL CA C sing N N 458 VAL CA CB sing N N 459 VAL CA HA sing N N 460 VAL C O doub N N 461 VAL C OXT sing N N 462 VAL CB CG1 sing N N 463 VAL CB CG2 sing N N 464 VAL CB HB sing N N 465 VAL CG1 HG11 sing N N 466 VAL CG1 HG12 sing N N 467 VAL CG1 HG13 sing N N 468 VAL CG2 HG21 sing N N 469 VAL CG2 HG22 sing N N 470 VAL CG2 HG23 sing N N 471 VAL OXT HXT sing N N 472 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'French National Research Agency' France ANR-15-CE11-0029-02 1 'Russian Foundation for Basic Research' 'Russian Federation' 6.3157.2017/PP 2 'French Infrastructure for Integrated Structural Biology' France ANR-10-INSB-05-02 3 'Grenoble Alliance for Integrated Structural Cell Biology' France ANR-10-LABX-49-01 4 'Russian Science Foundation' 'Russian Federation' 'RSF 16-15-00242' 5 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4XTL _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6RF7 _atom_sites.fract_transf_matrix[1][1] 0.024632 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004270 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_