HEADER SIGNALING PROTEIN 15-APR-19 6RFI TITLE IRAK4 IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IRAK4, KINASE, INHIBITOR, CANCER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XUE,S.L.DEGORCE,G.R.ROBB,A.D.FERGUSON REVDAT 2 27-NOV-19 6RFI 1 JRNL REVDAT 1 30-OCT-19 6RFI 0 JRNL AUTH S.L.DEGORCE,R.ANJUM,A.BLOECHER,R.J.CARBAJO,K.S.DILLMAN, JRNL AUTH 2 L.DREW,C.T.HALSALL,E.M.LENZ,N.A.LINDSAY,M.F.MAYO,J.H.PINK, JRNL AUTH 3 G.R.ROBB,A.ROSEN,J.S.SCOTT,Y.XUE JRNL TITL DISCOVERY OF A SERIES OF 5-AZAQUINAZOLINES AS ORALLY JRNL TITL 2 EFFICACIOUS IRAK4 INHIBITORS TARGETING MYD88L265PMUTANT JRNL TITL 3 DIFFUSE LARGE B CELL LYMPHOMA. JRNL REF J.MED.CHEM. V. 62 9918 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31622099 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01346 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 PACIOREK REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.43 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2830 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2244 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2703 REMARK 3 BIN R VALUE (WORKING SET) : 0.2238 REMARK 3 BIN FREE R VALUE : 0.2357 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77550 REMARK 3 B22 (A**2) : -9.76900 REMARK 3 B33 (A**2) : 5.99360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.322 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.280 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.204 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.279 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.206 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4559 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6152 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1649 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 135 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 670 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4559 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 586 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5304 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.81 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -27.3497 -28.3458 -16.2687 REMARK 3 T TENSOR REMARK 3 T11: -0.1687 T22: -0.1263 REMARK 3 T33: -0.1977 T12: 0.0196 REMARK 3 T13: -0.0289 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.1103 L22: 1.7179 REMARK 3 L33: 2.1465 L12: -0.7261 REMARK 3 L13: 0.3411 L23: -0.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: 0.1882 S13: 0.2593 REMARK 3 S21: -0.0600 S22: -0.1388 S23: 0.1802 REMARK 3 S31: -0.0593 S32: -0.1545 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.0544 -33.1123 -15.3383 REMARK 3 T TENSOR REMARK 3 T11: -0.1304 T22: -0.0929 REMARK 3 T33: -0.2586 T12: -0.0059 REMARK 3 T13: 0.0188 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.0943 L22: 1.7303 REMARK 3 L33: 2.5234 L12: -0.5270 REMARK 3 L13: 0.3798 L23: 0.5242 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: 0.2496 S13: 0.0278 REMARK 3 S21: 0.0116 S22: -0.1540 S23: -0.1722 REMARK 3 S31: 0.1920 S32: -0.0213 S33: -0.0136 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 58.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.95200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.39050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.62400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.95200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.39050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.62400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.95200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.39050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.62400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.95200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.39050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.62400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 652 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 GLU A 147 REMARK 465 ASN A 148 REMARK 465 LEU A 149 REMARK 465 TYR A 150 REMARK 465 PHE A 151 REMARK 465 GLN A 152 REMARK 465 GLY A 153 REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 ILE A 185 REMARK 465 SER A 186 REMARK 465 VAL A 187 REMARK 465 GLY A 188 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 THR A 222 REMARK 465 THR A 223 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 MET B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 GLU B 147 REMARK 465 ASN B 148 REMARK 465 LEU B 149 REMARK 465 TYR B 150 REMARK 465 PHE B 151 REMARK 465 GLN B 152 REMARK 465 GLY B 153 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ALA B 216 REMARK 465 ALA B 217 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 THR B 222 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 501 O4 SO4 A 501 3455 0.13 REMARK 500 S SO4 A 501 S SO4 A 501 3455 0.36 REMARK 500 O2 SO4 A 501 O3 SO4 A 501 3455 0.71 REMARK 500 S SO4 A 501 O3 SO4 A 501 3455 1.24 REMARK 500 S SO4 A 501 O4 SO4 A 501 3455 1.40 REMARK 500 S SO4 A 501 O1 SO4 A 501 3455 1.55 REMARK 500 O3 SO4 A 501 O3 SO4 A 501 3455 1.78 REMARK 500 S SO4 A 501 O2 SO4 A 501 3455 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 190 -31.32 -130.54 REMARK 500 MET A 192 -41.45 -178.62 REMARK 500 GLU A 194 69.87 -170.25 REMARK 500 VAL A 205 -96.20 -110.17 REMARK 500 ASN A 206 48.52 -82.40 REMARK 500 LEU A 258 97.28 62.96 REMARK 500 ARG A 310 -1.49 77.30 REMARK 500 ASP A 311 52.77 -148.53 REMARK 500 ASP A 329 88.81 63.09 REMARK 500 THR A 342 -11.76 65.28 REMARK 500 LYS A 417 36.70 -91.36 REMARK 500 ASP B 181 106.40 -39.63 REMARK 500 ASN B 207 -7.88 71.75 REMARK 500 GLU B 224 -36.77 67.43 REMARK 500 ARG B 310 -1.16 78.99 REMARK 500 ASP B 311 49.30 -151.53 REMARK 500 ASP B 329 88.99 61.36 REMARK 500 LYS B 417 34.70 -87.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K1H A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K1H B 502 DBREF 6RFI A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 6RFI B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQADV 6RFI MET A 139 UNP Q9NWZ3 INITIATING METHIONINE SEQADV 6RFI HIS A 140 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 141 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 142 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 143 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 144 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 145 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS A 146 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLU A 147 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI ASN A 148 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI LEU A 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI TYR A 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI PHE A 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLN A 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLY A 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI MET B 139 UNP Q9NWZ3 INITIATING METHIONINE SEQADV 6RFI HIS B 140 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 141 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 142 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 143 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 144 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 145 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI HIS B 146 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLU B 147 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI ASN B 148 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI LEU B 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI TYR B 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI PHE B 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLN B 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6RFI GLY B 153 UNP Q9NWZ3 EXPRESSION TAG SEQRES 1 A 322 MET HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 322 GLN GLY GLU ASN LYS SER LEU GLU VAL SER ASP THR ARG SEQRES 3 A 322 PHE HIS SER PHE SER PHE TYR GLU LEU LYS ASN VAL THR SEQRES 4 A 322 ASN ASN PHE ASP GLU ARG PRO ILE SER VAL GLY GLY ASN SEQRES 5 A 322 LYS MET GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS GLY SEQRES 6 A 322 TYR VAL ASN ASN THR THR VAL ALA VAL LYS LYS LEU ALA SEQRES 7 A 322 ALA MET VAL ASP ILE THR THR GLU GLU LEU LYS GLN GLN SEQRES 8 A 322 PHE ASP GLN GLU ILE LYS VAL MET ALA LYS CYS GLN HIS SEQRES 9 A 322 GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SER ASP GLY SEQRES 10 A 322 ASP ASP LEU CYS LEU VAL TYR VAL TYR MET PRO ASN GLY SEQRES 11 A 322 SER LEU LEU ASP ARG LEU SER CYS LEU ASP GLY THR PRO SEQRES 12 A 322 PRO LEU SER TRP HIS MET ARG CYS LYS ILE ALA GLN GLY SEQRES 13 A 322 ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS HIS SEQRES 14 A 322 ILE HIS ARG ASP ILE LYS SER ALA ASN ILE LEU LEU ASP SEQRES 15 A 322 GLU ALA PHE THR ALA LYS ILE SER ASP PHE GLY LEU ALA SEQRES 16 A 322 ARG ALA SER GLU LYS PHE ALA GLN THR VAL MET TPO SEP SEQRES 17 A 322 ARG ILE VAL GLY THR THR ALA TYR MET ALA PRO GLU ALA SEQRES 18 A 322 LEU ARG GLY GLU ILE THR PRO LYS SER ASP ILE TYR SER SEQRES 19 A 322 PHE GLY VAL VAL LEU LEU GLU ILE ILE THR GLY LEU PRO SEQRES 20 A 322 ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU ASP SEQRES 21 A 322 ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS THR ILE GLU SEQRES 22 A 322 ASP TYR ILE ASP LYS LYS MET ASN ASP ALA ASP SER THR SEQRES 23 A 322 SER VAL GLU ALA MET TYR SER VAL ALA SER GLN CYS LEU SEQRES 24 A 322 HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS VAL SEQRES 25 A 322 GLN GLN LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 322 MET HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 B 322 GLN GLY GLU ASN LYS SER LEU GLU VAL SER ASP THR ARG SEQRES 3 B 322 PHE HIS SER PHE SER PHE TYR GLU LEU LYS ASN VAL THR SEQRES 4 B 322 ASN ASN PHE ASP GLU ARG PRO ILE SER VAL GLY GLY ASN SEQRES 5 B 322 LYS MET GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS GLY SEQRES 6 B 322 TYR VAL ASN ASN THR THR VAL ALA VAL LYS LYS LEU ALA SEQRES 7 B 322 ALA MET VAL ASP ILE THR THR GLU GLU LEU LYS GLN GLN SEQRES 8 B 322 PHE ASP GLN GLU ILE LYS VAL MET ALA LYS CYS GLN HIS SEQRES 9 B 322 GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SER ASP GLY SEQRES 10 B 322 ASP ASP LEU CYS LEU VAL TYR VAL TYR MET PRO ASN GLY SEQRES 11 B 322 SER LEU LEU ASP ARG LEU SER CYS LEU ASP GLY THR PRO SEQRES 12 B 322 PRO LEU SER TRP HIS MET ARG CYS LYS ILE ALA GLN GLY SEQRES 13 B 322 ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS HIS SEQRES 14 B 322 ILE HIS ARG ASP ILE LYS SER ALA ASN ILE LEU LEU ASP SEQRES 15 B 322 GLU ALA PHE THR ALA LYS ILE SER ASP PHE GLY LEU ALA SEQRES 16 B 322 ARG ALA SER GLU LYS PHE ALA GLN THR VAL MET TPO SEP SEQRES 17 B 322 ARG ILE VAL GLY THR THR ALA TYR MET ALA PRO GLU ALA SEQRES 18 B 322 LEU ARG GLY GLU ILE THR PRO LYS SER ASP ILE TYR SER SEQRES 19 B 322 PHE GLY VAL VAL LEU LEU GLU ILE ILE THR GLY LEU PRO SEQRES 20 B 322 ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU ASP SEQRES 21 B 322 ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS THR ILE GLU SEQRES 22 B 322 ASP TYR ILE ASP LYS LYS MET ASN ASP ALA ASP SER THR SEQRES 23 B 322 SER VAL GLU ALA MET TYR SER VAL ALA SER GLN CYS LEU SEQRES 24 B 322 HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS VAL SEQRES 25 B 322 GLN GLN LEU LEU GLN GLU MET THR ALA SER MODRES 6RFI TPO A 345 THR MODIFIED RESIDUE MODRES 6RFI SEP A 346 SER MODIFIED RESIDUE MODRES 6RFI TPO B 345 THR MODIFIED RESIDUE MODRES 6RFI SEP B 346 SER MODIFIED RESIDUE HET TPO A 345 11 HET SEP A 346 10 HET TPO B 345 11 HET SEP B 346 10 HET SO4 A 501 5 HET K1H A 502 29 HET SO4 B 501 5 HET K1H B 502 29 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETNAM K1H METHYL 4-[4-[(6-CYANOQUINAZOLIN-4-YL) HETNAM 2 K1H AMINO]CYCLOHEXYL]PIPERAZINE-1-CARBOXYLATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 K1H 2(C21 H26 N6 O2) FORMUL 7 HOH *123(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 GLU A 225 CYS A 240 1 16 HELIX 3 AA3 SER A 269 SER A 275 1 7 HELIX 4 AA4 CYS A 276 THR A 280 5 5 HELIX 5 AA5 SER A 284 ASN A 305 1 22 HELIX 6 AA6 THR A 351 MET A 355 5 5 HELIX 7 AA7 GLU A 358 ARG A 361 5 4 HELIX 8 AA8 PRO A 366 GLY A 383 1 18 HELIX 9 AA9 LEU A 395 LEU A 397 5 3 HELIX 10 AB1 ASP A 398 ASP A 405 1 8 HELIX 11 AB2 THR A 409 TYR A 413 5 5 HELIX 12 AB3 ASP A 422 LEU A 437 1 16 HELIX 13 AB4 LYS A 440 ARG A 444 5 5 HELIX 14 AB5 ASP A 446 MET A 457 1 12 HELIX 15 AB6 SER B 169 THR B 177 1 9 HELIX 16 AB7 PRO B 184 GLY B 188 5 5 HELIX 17 AB8 GLU B 224 CYS B 240 1 17 HELIX 18 AB9 SER B 269 SER B 275 1 7 HELIX 19 AC1 CYS B 276 THR B 280 5 5 HELIX 20 AC2 SER B 284 ASN B 305 1 22 HELIX 21 AC3 LYS B 313 ALA B 315 5 3 HELIX 22 AC4 THR B 351 MET B 355 5 5 HELIX 23 AC5 THR B 365 GLY B 383 1 19 HELIX 24 AC6 LEU B 395 LEU B 397 5 3 HELIX 25 AC7 ASP B 398 ASP B 405 1 8 HELIX 26 AC8 THR B 409 ILE B 414 1 6 HELIX 27 AC9 ASP B 422 LEU B 437 1 16 HELIX 28 AD1 ASP B 446 THR B 458 1 13 SHEET 1 AA1 5 HIS A 166 SER A 167 0 SHEET 2 AA1 5 LEU A 248 SER A 252 1 O LEU A 249 N HIS A 166 SHEET 3 AA1 5 CYS A 259 VAL A 263 -1 O VAL A 261 N LEU A 249 SHEET 4 AA1 5 THR A 209 LYS A 214 -1 N LYS A 213 O LEU A 260 SHEET 5 AA1 5 VAL A 199 TYR A 204 -1 N TYR A 201 O VAL A 212 SHEET 1 AA2 2 ILE A 317 LEU A 319 0 SHEET 2 AA2 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA3 2 VAL A 343 MET A 344 0 SHEET 2 AA3 2 GLU A 363 ILE A 364 -1 O ILE A 364 N VAL A 343 SHEET 1 AA4 6 HIS B 166 SER B 167 0 SHEET 2 AA4 6 LEU B 248 SER B 252 1 O LEU B 249 N HIS B 166 SHEET 3 AA4 6 CYS B 259 VAL B 263 -1 O VAL B 261 N GLY B 250 SHEET 4 AA4 6 THR B 208 LYS B 214 -1 N LYS B 213 O LEU B 260 SHEET 5 AA4 6 GLY B 198 VAL B 205 -1 N VAL B 205 O THR B 208 SHEET 6 AA4 6 LYS B 191 GLY B 195 -1 N GLY B 195 O GLY B 198 SHEET 1 AA5 2 ILE B 317 LEU B 319 0 SHEET 2 AA5 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK C MET A 344 N TPO A 345 1555 1555 1.35 LINK C TPO A 345 N SEP A 346 1555 1555 1.35 LINK C SEP A 346 N ARG A 347 1555 1555 1.35 LINK C MET B 344 N TPO B 345 1555 1555 1.35 LINK C TPO B 345 N SEP B 346 1555 1555 1.35 LINK C SEP B 346 N ARG B 347 1555 1555 1.36 CISPEP 1 ASP A 256 ASP A 257 0 -7.28 CISPEP 2 GLU A 392 PRO A 393 0 -1.16 CISPEP 3 GLU B 392 PRO B 393 0 0.98 SITE 1 AC1 3 PHE A 165 HIS A 166 SER A 167 SITE 1 AC2 13 MET A 192 GLY A 193 GLU A 194 ALA A 211 SITE 2 AC2 13 LYS A 213 TYR A 262 VAL A 263 TYR A 264 SITE 3 AC2 13 MET A 265 ASP A 272 LEU A 277 LEU A 318 SITE 4 AC2 13 HOH A 620 SITE 1 AC3 4 ASP A 422 SER A 423 LYS B 174 ASN B 207 SITE 1 AC4 13 MET B 192 GLY B 193 GLU B 194 VAL B 200 SITE 2 AC4 13 ALA B 211 LYS B 213 TYR B 262 VAL B 263 SITE 3 AC4 13 MET B 265 ASP B 272 LEU B 318 HOH B 605 SITE 4 AC4 13 HOH B 646 CRYST1 87.904 116.781 141.248 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007080 0.00000