HEADER TRANSFERASE 15-APR-19 6RFO TITLE ERK2 MAP KINASE WITH THE ACTIVATION LOOP OF P38ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1,MITOGEN-ACTIVATED COMPND 3 PROTEIN KINASE 14,MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 6 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 7 MAPK 2,MAPK 14,CYTOKINE SUPPRESSIVE ANTI-INFLAMMATORY DRUG-BINDING COMPND 8 PROTEIN,CSBP,MAP KINASE MXI2,MAX-INTERACTING PROTEIN 2,MITOGEN- COMPND 9 ACTIVATED PROTEIN KINASE P38 ALPHA,MAP KINASE P38 ALPHA,STRESS- COMPND 10 ACTIVATED PROTEIN KINASE 2A,SAPK2A,MAPK 1,ERT1,EXTRACELLULAR SIGNAL- COMPND 11 REGULATED KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN- COMPND 12 ACTIVATED PROTEIN KINASE 2,MAPK 2; COMPND 13 EC: 2.7.11.24,2.7.11.24,2.7.11.24; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 10116, 9606; SOURCE 5 GENE: MAPK1, ERK2, MAPK, PRKM1, MAPK14, CSBP, CSBP1, CSBP2, CSPB1, SOURCE 6 MXI2, SAPK2A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NLED, EFFECTORS, T3SS, MAP KINASE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,M.EITAN-WEXLER REVDAT 3 24-JAN-24 6RFO 1 REMARK REVDAT 2 22-JUL-20 6RFO 1 JRNL REVDAT 1 27-MAY-20 6RFO 0 JRNL AUTH L.GUR-ARIE,M.EITAN-WEXLER,N.WEINBERGER,I.ROSENSHINE,O.LIVNAH JRNL TITL THE BACTERIAL METALLOPROTEASE NLED SELECTIVELY CLEAVES JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASES THAT HAVE HIGH FLEXIBILITY JRNL TITL 3 IN THEIR ACTIVATION LOOP. JRNL REF J.BIOL.CHEM. V. 295 9409 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32404367 JRNL DOI 10.1074/JBC.RA120.013590 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.025 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2510 ; 0.006 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3581 ; 1.894 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5830 ; 1.465 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 7.272 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.089 ;22.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;19.311 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;28.514 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2869 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 5.900 ; 3.413 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1256 ; 5.904 ; 3.405 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1562 ; 6.952 ; 5.093 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1562 ; 6.951 ; 5.094 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 7.479 ; 4.084 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1390 ; 7.476 ; 4.088 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2020 ; 8.598 ; 5.881 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3032 ; 8.782 ;40.699 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2999 ; 8.759 ;40.354 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5157 ; 5.347 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292101175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.71600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4S31 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 6.8 OR 6.5, 2% (W/V) PEG 550, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.34400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 GLY A -26 REMARK 465 SER A -25 REMARK 465 SER A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 GLY A -15 REMARK 465 LEU A -14 REMARK 465 VAL A -13 REMARK 465 PRO A -12 REMARK 465 ARG A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 MET A 3 REMARK 465 ILE A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 TYR A 34 REMARK 465 GLU A 181 REMARK 465 MET A 182 REMARK 465 THR A 183 REMARK 465 GLY A 184 REMARK 465 TYR A 185 REMARK 465 VAL A 186 REMARK 465 SER A 200 REMARK 465 LYS A 201 REMARK 465 GLY A 202 REMARK 465 PHE A 329 REMARK 465 ASP A 330 REMARK 465 MET A 331 REMARK 465 GLU A 332 REMARK 465 LEU A 333 REMARK 465 ASP A 334 REMARK 465 ASP A 335 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 CG2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 24 ND2 ASN A 43 1.66 REMARK 500 O HOH A 554 O HOH A 572 2.08 REMARK 500 OD2 ASP A 249 O HOH A 401 2.12 REMARK 500 SG CYS A 159 O HOH A 572 2.16 REMARK 500 OE1 GLU A 312 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 89 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 56.58 -167.71 REMARK 500 VAL A 19 60.95 -117.78 REMARK 500 THR A 24 -61.59 -94.93 REMARK 500 ARG A 146 -0.59 71.19 REMARK 500 ASP A 147 41.03 -142.94 REMARK 500 ASP A 165 92.81 81.79 REMARK 500 LEU A 292 55.85 -95.05 REMARK 500 ASP A 316 90.19 -160.10 REMARK 500 LYS A 338 -52.00 -28.41 REMARK 500 PRO A 354 -28.03 -27.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ERK RELATED DB: PDB DBREF 6RFO A -7 158 UNP P63086 MK01_RAT 1 158 DBREF 6RFO A 159 185 UNP Q16539 MK14_HUMAN 162 182 DBREF 6RFO A 186 358 UNP P63086 MK01_RAT 186 358 SEQADV 6RFO MET A -27 UNP P63086 INITIATING METHIONINE SEQADV 6RFO GLY A -26 UNP P63086 EXPRESSION TAG SEQADV 6RFO SER A -25 UNP P63086 EXPRESSION TAG SEQADV 6RFO SER A -24 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -23 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -22 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -21 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -20 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -19 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -18 UNP P63086 EXPRESSION TAG SEQADV 6RFO SER A -17 UNP P63086 EXPRESSION TAG SEQADV 6RFO SER A -16 UNP P63086 EXPRESSION TAG SEQADV 6RFO GLY A -15 UNP P63086 EXPRESSION TAG SEQADV 6RFO LEU A -14 UNP P63086 EXPRESSION TAG SEQADV 6RFO VAL A -13 UNP P63086 EXPRESSION TAG SEQADV 6RFO PRO A -12 UNP P63086 EXPRESSION TAG SEQADV 6RFO ARG A -11 UNP P63086 EXPRESSION TAG SEQADV 6RFO GLY A -10 UNP P63086 EXPRESSION TAG SEQADV 6RFO SER A -9 UNP P63086 EXPRESSION TAG SEQADV 6RFO HIS A -8 UNP P63086 EXPRESSION TAG SEQADV 6RFO ASP A 160 UNP Q16539 GLU 163 CONFLICT SEQRES 1 A 372 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 372 LEU VAL PRO ARG GLY SER HIS MET ALA ALA ALA ALA ALA SEQRES 3 A 372 ALA GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL SEQRES 4 A 372 GLY PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY SEQRES 5 A 372 ALA TYR GLY MET VAL CYS SER ALA TYR ASP ASN LEU ASN SEQRES 6 A 372 LYS VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU SEQRES 7 A 372 HIS GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS SEQRES 8 A 372 ILE LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE SEQRES 9 A 372 ASN ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS SEQRES 10 A 372 ASP VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU SEQRES 11 A 372 TYR LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS SEQRES 12 A 372 ILE CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS SEQRES 13 A 372 TYR ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS SEQRES 14 A 372 PRO SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS SEQRES 15 A 372 ILE LEU ASP PHE GLY LEU ALA ARG HIS THR ASP ASP GLU SEQRES 16 A 372 MET THR GLY TYR VAL ALA THR ARG TRP TYR ARG ALA PRO SEQRES 17 A 372 GLU ILE MET LEU ASN SER LYS GLY TYR THR LYS SER ILE SEQRES 18 A 372 ASP ILE TRP SER VAL GLY CYS ILE LEU ALA GLU MET LEU SEQRES 19 A 372 SER ASN ARG PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP SEQRES 20 A 372 GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SER PRO SER SEQRES 21 A 372 GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG SEQRES 22 A 372 ASN TYR LEU LEU SER LEU PRO HIS LYS ASN LYS VAL PRO SEQRES 23 A 372 TRP ASN ARG LEU PHE PRO ASN ALA ASP SER LYS ALA LEU SEQRES 24 A 372 ASP LEU LEU ASP LYS MET LEU THR PHE ASN PRO HIS LYS SEQRES 25 A 372 ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU SEQRES 26 A 372 GLU GLN TYR TYR ASP PRO SER ASP GLU PRO ILE ALA GLU SEQRES 27 A 372 ALA PRO PHE LYS PHE ASP MET GLU LEU ASP ASP LEU PRO SEQRES 28 A 372 LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU GLU THR ALA SEQRES 29 A 372 ARG PHE GLN PRO GLY TYR ARG SER FORMUL 2 HOH *173(H2 O) HELIX 1 AA1 HIS A 59 PHE A 76 1 18 HELIX 2 AA2 LEU A 110 GLN A 117 1 8 HELIX 3 AA3 SER A 120 ALA A 141 1 22 HELIX 4 AA4 LYS A 149 SER A 151 5 3 HELIX 5 AA5 THR A 188 ARG A 192 5 5 HELIX 6 AA6 ALA A 193 ASN A 199 1 7 HELIX 7 AA7 LYS A 205 ASN A 222 1 18 HELIX 8 AA8 HIS A 230 GLY A 243 1 14 HELIX 9 AA9 SER A 246 CYS A 252 1 7 HELIX 10 AB1 ASN A 255 LEU A 265 1 11 HELIX 11 AB2 PRO A 272 PHE A 277 1 6 HELIX 12 AB3 ASP A 281 LEU A 292 1 12 HELIX 13 AB4 GLU A 301 ALA A 307 1 7 HELIX 14 AB5 HIS A 308 GLU A 312 5 5 HELIX 15 AB6 ASP A 316 GLU A 320 5 5 HELIX 16 AB7 PRO A 337 THR A 349 1 13 HELIX 17 AB8 ALA A 350 GLN A 353 5 4 SHEET 1 AA1 5 TYR A 23 SER A 27 0 SHEET 2 AA1 5 VAL A 37 ASP A 42 -1 O TYR A 41 N THR A 24 SHEET 3 AA1 5 ARG A 48 ILE A 54 -1 O VAL A 49 N ALA A 40 SHEET 4 AA1 5 VAL A 99 ASP A 104 -1 O VAL A 99 N ILE A 54 SHEET 5 AA1 5 ASP A 86 ILE A 88 -1 N ILE A 88 O TYR A 100 SHEET 1 AA2 3 THR A 108 ASP A 109 0 SHEET 2 AA2 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108 SHEET 3 AA2 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 AA3 2 VAL A 143 LEU A 144 0 SHEET 2 AA3 2 ARG A 170 HIS A 171 -1 O ARG A 170 N LEU A 144 CRYST1 47.999 68.688 60.231 90.00 109.13 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020834 0.000000 0.007226 0.00000 SCALE2 0.000000 0.014559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017573 0.00000