HEADER SUGAR BINDING PROTEIN 16-APR-19 6RGG TITLE PHOTORHABDUS LAUMONDII LECTIN PLL2 IN COMPLEX WITH O-METHYLATED PGL-1- TITLE 2 DERIVED DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN PLL2 FROM PHOTORHABDUS LAUMONDII; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LAUMONDII SUBSP. LAUMONDII TTO1; SOURCE 3 ORGANISM_TAXID: 243265; SOURCE 4 GENE: PLU0734; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET25-B KEYWDS LECTIN, PHOTORHABDUS, PGL-1, O-METHYLATED SACCHARIDE, BETA-PROPELLER, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HOUSER,E.FUJDIAROVA,M.WIMMEROVA REVDAT 3 24-FEB-21 6RGG 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 6RGG 1 REMARK SITE REVDAT 1 01-JUL-20 6RGG 0 JRNL AUTH E.FUJDIAROVA,J.HOUSER,P.DOBES,G.PAULIKOVA,N.KONDAKOV, JRNL AUTH 2 L.KONONOV,P.HYRSL,M.WIMMEROVA JRNL TITL HEPTABLADED BETA-PROPELLER LECTINS PLL2 AND PHL FROM JRNL TITL 2 PHOTORHABDUS SPP. RECOGNIZE O-METHYLATED SUGARS AND JRNL TITL 3 INFLUENCE THE HOST IMMUNE SYSTEM. JRNL REF FEBS J. V. 288 1343 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32559333 JRNL DOI 10.1111/FEBS.15457 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 38568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5492 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4726 ; 0.037 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7546 ; 1.430 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10900 ; 2.431 ; 1.603 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 8.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;31.926 ;22.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;14.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;10.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 749 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6203 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1225 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2712 ; 4.196 ; 6.531 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2711 ; 4.193 ; 6.530 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3383 ; 5.814 ; 9.794 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3384 ; 5.814 ; 9.795 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2780 ; 4.684 ; 6.988 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2781 ; 4.683 ; 6.989 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4164 ; 6.949 ;10.321 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6118 ; 8.974 ;76.402 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6119 ; 8.975 ;76.409 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 67.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG 4000, 0.1 M SODIUM ACETATE REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.67350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 12 REMARK 465 ASN A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 ALA A 23 REMARK 465 ILE A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 THR A 351 REMARK 465 PRO A 352 REMARK 465 SER A 353 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 ASN B 7 REMARK 465 ILE B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 PRO B 11 REMARK 465 ASP B 12 REMARK 465 ASN B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 GLU B 21 REMARK 465 VAL B 22 REMARK 465 ALA B 23 REMARK 465 ILE B 24 REMARK 465 GLU B 25 REMARK 465 ASN B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 THR B 351 REMARK 465 PRO B 352 REMARK 465 SER B 353 REMARK 465 LYS B 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 79 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 K3Q B 402 O4 7CV B 403 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 -148.10 68.64 REMARK 500 ALA A 115 -140.80 -123.32 REMARK 500 ASN A 172 -147.42 57.91 REMARK 500 ASN A 268 -137.45 63.13 REMARK 500 VAL A 303 -60.06 73.24 REMARK 500 ASN A 316 -139.47 65.41 REMARK 500 ASN A 342 19.95 59.38 REMARK 500 LYS A 361 -152.90 67.69 REMARK 500 LEU B 31 130.34 -34.19 REMARK 500 ASN B 77 -148.47 69.85 REMARK 500 ALA B 115 -153.32 -132.52 REMARK 500 SER B 118 -175.63 -61.64 REMARK 500 ASN B 172 -148.96 65.29 REMARK 500 ASP B 209 11.08 81.30 REMARK 500 SER B 214 179.49 -53.58 REMARK 500 ASN B 268 -139.58 54.83 REMARK 500 VAL B 303 -72.58 72.79 REMARK 500 SER B 310 -170.18 -69.32 REMARK 500 TRP B 312 150.11 -45.60 REMARK 500 ASN B 316 -141.92 58.76 REMARK 500 LYS B 361 -149.30 71.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 30 O REMARK 620 2 SER A 32 OG 88.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 89 OD1 REMARK 620 2 GLY A 139 O 120.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 136 OD1 REMARK 620 2 GLY A 187 O 162.0 REMARK 620 3 GLN A 205 OE1 73.4 88.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 322 O REMARK 620 2 THR A 324 OG1 108.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 136 OD1 REMARK 620 2 GLY B 187 O 149.1 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6RFZ RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH D-GLUCOSE REMARK 900 RELATED ID: 6RG1 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH L-RHAMNOSE REMARK 900 RELATED ID: 6RG2 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH 3-O-METHYL-D-GLUCOSE DBREF 6RGG A 1 371 UNP Q7N8I8 Q7N8I8_PHOLL 1 371 DBREF 6RGG B 1 371 UNP Q7N8I8 Q7N8I8_PHOLL 1 371 SEQRES 1 A 371 MET GLN GLU GLU PRO THR ASN ILE PRO ARG PRO ASP ASN SEQRES 2 A 371 ALA GLU LEU LEU VAL ALA SER GLU VAL ALA ILE GLU ASN SEQRES 3 A 371 ALA ALA ILE ALA LEU SER GLU ILE VAL SER VAL VAL ASN SEQRES 4 A 371 THR SER ASP GLY ARG ILE GLU VAL PHE GLY VAL GLY THR SEQRES 5 A 371 ASP ASN ALA VAL TRP HIS ASN ARG GLN THR ALA PRO HIS SEQRES 6 A 371 SER GLY SER SER TRP THR GLY TRP ILE SER LEU ASN GLY SEQRES 7 A 371 LYS VAL THR SER LYS PRO VAL VAL TYR ILE ASN THR ASP SEQRES 8 A 371 GLY ARG LEU GLU VAL PHE ALA ARG GLY THR ASP ASN ALA SEQRES 9 A 371 LEU TRP HIS ILE TRP GLN THR ALA THR ASN ALA GLY TRP SEQRES 10 A 371 SER ASN TRP GLN SER LEU GLY GLY THR ILE THR SER ASN SEQRES 11 A 371 PRO ALA VAL TYR VAL ASN THR ASP GLY ARG ILE ASP VAL SEQRES 12 A 371 PHE ALA ARG GLY THR ASP ASN ALA LEU TRP HIS ILE SER SEQRES 13 A 371 GLN THR ALA ALA HIS SER GLY PRO TRP SER SER TRP GLN SEQRES 14 A 371 SER LEU ASN GLY VAL ILE THR SER ASN PRO ALA VAL HIS SEQRES 15 A 371 ILE ASN SER ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY SEQRES 16 A 371 THR ASP ASN ALA LEU TRP HIS ILE TRP GLN THR ALA PRO SEQRES 17 A 371 ASP SER ASN GLN TRP SER GLY TRP ASP SER LEU GLY GLY SEQRES 18 A 371 VAL ILE THR SER ASP PRO VAL VAL ILE GLY THR ALA ASP SEQRES 19 A 371 GLY ARG LEU GLU VAL PHE ALA ARG GLY SER ASN ASN ALA SEQRES 20 A 371 LEU TYR HIS ILE TRP GLN THR VAL PRO HIS GLY GLY PRO SEQRES 21 A 371 TRP SER ASN TRP ALA SER LEU ASN GLY VAL ILE THR SER SEQRES 22 A 371 ALA PRO ALA VAL VAL LYS ASN SER ASP GLY ARG LEU GLU SEQRES 23 A 371 VAL PHE ALA ARG GLY THR ASN ASN ALA LEU TYR HIS ILE SEQRES 24 A 371 TRP GLN THR VAL SER HIS SER GLY PRO TRP SER ASN TRP SEQRES 25 A 371 ALA THR LEU ASN GLY THR ILE THR SER ALA PRO THR ALA SEQRES 26 A 371 VAL GLU ASP ALA ASP GLY ARG LEU GLU VAL PHE ALA ARG SEQRES 27 A 371 GLY THR ASP ASN ALA LEU TRP ASN ILE TRP GLN ALA THR SEQRES 28 A 371 PRO SER TRP SER ALA TRP VAL SER LEU LYS GLY SER LEU SEQRES 29 A 371 ILE ASP ALA SER ALA ILE LYS SEQRES 1 B 371 MET GLN GLU GLU PRO THR ASN ILE PRO ARG PRO ASP ASN SEQRES 2 B 371 ALA GLU LEU LEU VAL ALA SER GLU VAL ALA ILE GLU ASN SEQRES 3 B 371 ALA ALA ILE ALA LEU SER GLU ILE VAL SER VAL VAL ASN SEQRES 4 B 371 THR SER ASP GLY ARG ILE GLU VAL PHE GLY VAL GLY THR SEQRES 5 B 371 ASP ASN ALA VAL TRP HIS ASN ARG GLN THR ALA PRO HIS SEQRES 6 B 371 SER GLY SER SER TRP THR GLY TRP ILE SER LEU ASN GLY SEQRES 7 B 371 LYS VAL THR SER LYS PRO VAL VAL TYR ILE ASN THR ASP SEQRES 8 B 371 GLY ARG LEU GLU VAL PHE ALA ARG GLY THR ASP ASN ALA SEQRES 9 B 371 LEU TRP HIS ILE TRP GLN THR ALA THR ASN ALA GLY TRP SEQRES 10 B 371 SER ASN TRP GLN SER LEU GLY GLY THR ILE THR SER ASN SEQRES 11 B 371 PRO ALA VAL TYR VAL ASN THR ASP GLY ARG ILE ASP VAL SEQRES 12 B 371 PHE ALA ARG GLY THR ASP ASN ALA LEU TRP HIS ILE SER SEQRES 13 B 371 GLN THR ALA ALA HIS SER GLY PRO TRP SER SER TRP GLN SEQRES 14 B 371 SER LEU ASN GLY VAL ILE THR SER ASN PRO ALA VAL HIS SEQRES 15 B 371 ILE ASN SER ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY SEQRES 16 B 371 THR ASP ASN ALA LEU TRP HIS ILE TRP GLN THR ALA PRO SEQRES 17 B 371 ASP SER ASN GLN TRP SER GLY TRP ASP SER LEU GLY GLY SEQRES 18 B 371 VAL ILE THR SER ASP PRO VAL VAL ILE GLY THR ALA ASP SEQRES 19 B 371 GLY ARG LEU GLU VAL PHE ALA ARG GLY SER ASN ASN ALA SEQRES 20 B 371 LEU TYR HIS ILE TRP GLN THR VAL PRO HIS GLY GLY PRO SEQRES 21 B 371 TRP SER ASN TRP ALA SER LEU ASN GLY VAL ILE THR SER SEQRES 22 B 371 ALA PRO ALA VAL VAL LYS ASN SER ASP GLY ARG LEU GLU SEQRES 23 B 371 VAL PHE ALA ARG GLY THR ASN ASN ALA LEU TYR HIS ILE SEQRES 24 B 371 TRP GLN THR VAL SER HIS SER GLY PRO TRP SER ASN TRP SEQRES 25 B 371 ALA THR LEU ASN GLY THR ILE THR SER ALA PRO THR ALA SEQRES 26 B 371 VAL GLU ASP ALA ASP GLY ARG LEU GLU VAL PHE ALA ARG SEQRES 27 B 371 GLY THR ASP ASN ALA LEU TRP ASN ILE TRP GLN ALA THR SEQRES 28 B 371 PRO SER TRP SER ALA TRP VAL SER LEU LYS GLY SER LEU SEQRES 29 B 371 ILE ASP ALA SER ALA ILE LYS HET K3Q A 401 14 HET K3Q A 402 14 HET K3Q A 403 13 HET 7CV A 404 13 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET NA A 408 1 HET K3Q B 401 14 HET K3Q B 402 13 HET 7CV B 403 13 HET EDO B 404 4 HET K3Q B 405 14 HET NA B 406 1 HETNAM K3Q 3,6-O-DIMETHYL-D-GLUCOSE HETNAM 7CV 6-DEOXY-2,3-DI-O-METHYL-ALPHA-L-MANNOPYRANOSE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN 7CV 6-DEOXY-2,3-DI-O-METHYL-ALPHA-L-MANNOSE; 6-DEOXY-2,3- HETSYN 2 7CV DI-O-METHYL-L-MANNOSE; 6-DEOXY-2,3-DI-O-METHYL-MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 K3Q 6(C8 H16 O6) FORMUL 6 7CV 2(C8 H16 O5) FORMUL 7 NA 5(NA 1+) FORMUL 14 EDO C2 H6 O2 FORMUL 17 HOH *16(H2 O) SHEET 1 AA1 4 SER A 36 ASN A 39 0 SHEET 2 AA1 4 ILE A 45 GLY A 51 -1 O PHE A 48 N SER A 36 SHEET 3 AA1 4 VAL A 56 ARG A 60 -1 O TRP A 57 N GLY A 49 SHEET 4 AA1 4 ILE A 74 ASN A 77 -1 O LEU A 76 N VAL A 56 SHEET 1 AA2 3 SER A 36 ASN A 39 0 SHEET 2 AA2 3 ILE A 45 GLY A 51 -1 O PHE A 48 N SER A 36 SHEET 3 AA2 3 LEU A 364 ILE A 365 -1 O ILE A 365 N VAL A 50 SHEET 1 AA3 4 VAL A 85 ILE A 88 0 SHEET 2 AA3 4 LEU A 94 ARG A 99 -1 O GLU A 95 N TYR A 87 SHEET 3 AA3 4 LEU A 105 TRP A 109 -1 O TRP A 106 N ALA A 98 SHEET 4 AA3 4 GLN A 121 SER A 122 -1 O GLN A 121 N HIS A 107 SHEET 1 AA4 4 ALA A 132 VAL A 135 0 SHEET 2 AA4 4 ILE A 141 ARG A 146 -1 O ASP A 142 N TYR A 134 SHEET 3 AA4 4 LEU A 152 ALA A 159 -1 O TRP A 153 N ALA A 145 SHEET 4 AA4 4 SER A 162 TRP A 165 -1 O PRO A 164 N THR A 158 SHEET 1 AA5 4 ALA A 132 VAL A 135 0 SHEET 2 AA5 4 ILE A 141 ARG A 146 -1 O ASP A 142 N TYR A 134 SHEET 3 AA5 4 LEU A 152 ALA A 159 -1 O TRP A 153 N ALA A 145 SHEET 4 AA5 4 GLN A 169 SER A 170 -1 O GLN A 169 N HIS A 154 SHEET 1 AA6 4 ALA A 180 ILE A 183 0 SHEET 2 AA6 4 LEU A 189 ARG A 194 -1 O GLU A 190 N HIS A 182 SHEET 3 AA6 4 LEU A 200 TRP A 204 -1 O TRP A 201 N ALA A 193 SHEET 4 AA6 4 ASP A 217 SER A 218 -1 O ASP A 217 N HIS A 202 SHEET 1 AA7 4 VAL A 228 GLY A 231 0 SHEET 2 AA7 4 LEU A 237 ARG A 242 -1 O PHE A 240 N VAL A 228 SHEET 3 AA7 4 LEU A 248 VAL A 255 -1 O ILE A 251 N VAL A 239 SHEET 4 AA7 4 GLY A 258 TRP A 261 -1 O PRO A 260 N THR A 254 SHEET 1 AA8 4 VAL A 228 GLY A 231 0 SHEET 2 AA8 4 LEU A 237 ARG A 242 -1 O PHE A 240 N VAL A 228 SHEET 3 AA8 4 LEU A 248 VAL A 255 -1 O ILE A 251 N VAL A 239 SHEET 4 AA8 4 ALA A 265 ASN A 268 -1 O LEU A 267 N LEU A 248 SHEET 1 AA9 4 ALA A 276 LYS A 279 0 SHEET 2 AA9 4 LEU A 285 ARG A 290 -1 O PHE A 288 N ALA A 276 SHEET 3 AA9 4 LEU A 296 TRP A 300 -1 O TYR A 297 N ALA A 289 SHEET 4 AA9 4 ALA A 313 ASN A 316 -1 O LEU A 315 N LEU A 296 SHEET 1 AB1 4 THR A 324 GLU A 327 0 SHEET 2 AB1 4 LEU A 333 ARG A 338 -1 O GLU A 334 N VAL A 326 SHEET 3 AB1 4 LEU A 344 TRP A 348 -1 O TRP A 345 N ALA A 337 SHEET 4 AB1 4 VAL A 358 SER A 359 -1 O VAL A 358 N ASN A 346 SHEET 1 AB2 4 SER B 36 ASN B 39 0 SHEET 2 AB2 4 ILE B 45 GLY B 51 -1 O PHE B 48 N SER B 36 SHEET 3 AB2 4 VAL B 56 ARG B 60 -1 O ASN B 59 N VAL B 47 SHEET 4 AB2 4 ILE B 74 SER B 75 -1 O ILE B 74 N HIS B 58 SHEET 1 AB3 3 SER B 36 ASN B 39 0 SHEET 2 AB3 3 ILE B 45 GLY B 51 -1 O PHE B 48 N SER B 36 SHEET 3 AB3 3 LEU B 364 ILE B 365 -1 O ILE B 365 N VAL B 50 SHEET 1 AB4 4 VAL B 85 ILE B 88 0 SHEET 2 AB4 4 LEU B 94 ARG B 99 -1 O PHE B 97 N VAL B 85 SHEET 3 AB4 4 LEU B 105 TRP B 109 -1 O ILE B 108 N VAL B 96 SHEET 4 AB4 4 GLN B 121 GLY B 124 -1 O LEU B 123 N LEU B 105 SHEET 1 AB5 4 ALA B 132 VAL B 135 0 SHEET 2 AB5 4 ILE B 141 ARG B 146 -1 O PHE B 144 N ALA B 132 SHEET 3 AB5 4 LEU B 152 ALA B 159 -1 O ILE B 155 N VAL B 143 SHEET 4 AB5 4 SER B 162 TRP B 165 -1 O PRO B 164 N THR B 158 SHEET 1 AB6 4 ALA B 132 VAL B 135 0 SHEET 2 AB6 4 ILE B 141 ARG B 146 -1 O PHE B 144 N ALA B 132 SHEET 3 AB6 4 LEU B 152 ALA B 159 -1 O ILE B 155 N VAL B 143 SHEET 4 AB6 4 GLN B 169 SER B 170 -1 O GLN B 169 N HIS B 154 SHEET 1 AB7 4 ALA B 180 ILE B 183 0 SHEET 2 AB7 4 LEU B 189 ARG B 194 -1 O PHE B 192 N ALA B 180 SHEET 3 AB7 4 LEU B 200 TRP B 204 -1 O TRP B 201 N ALA B 193 SHEET 4 AB7 4 ASP B 217 GLY B 220 -1 O LEU B 219 N LEU B 200 SHEET 1 AB8 4 VAL B 228 GLY B 231 0 SHEET 2 AB8 4 LEU B 237 ARG B 242 -1 O PHE B 240 N VAL B 228 SHEET 3 AB8 4 LEU B 248 VAL B 255 -1 O TYR B 249 N ALA B 241 SHEET 4 AB8 4 GLY B 258 TRP B 261 -1 O PRO B 260 N THR B 254 SHEET 1 AB9 4 VAL B 228 GLY B 231 0 SHEET 2 AB9 4 LEU B 237 ARG B 242 -1 O PHE B 240 N VAL B 228 SHEET 3 AB9 4 LEU B 248 VAL B 255 -1 O TYR B 249 N ALA B 241 SHEET 4 AB9 4 ALA B 265 SER B 266 -1 O ALA B 265 N HIS B 250 SHEET 1 AC1 4 ALA B 276 LYS B 279 0 SHEET 2 AC1 4 LEU B 285 ARG B 290 -1 O PHE B 288 N ALA B 276 SHEET 3 AC1 4 LEU B 296 TRP B 300 -1 O TYR B 297 N ALA B 289 SHEET 4 AC1 4 ALA B 313 THR B 314 -1 O ALA B 313 N HIS B 298 SHEET 1 AC2 4 THR B 324 GLU B 327 0 SHEET 2 AC2 4 LEU B 333 ARG B 338 -1 O PHE B 336 N THR B 324 SHEET 3 AC2 4 LEU B 344 TRP B 348 -1 O TRP B 345 N ALA B 337 SHEET 4 AC2 4 VAL B 358 LYS B 361 -1 O LEU B 360 N LEU B 344 LINK C1 K3Q A 403 O4 7CV A 404 1555 1555 1.33 LINK C1 K3Q B 402 O4 7CV B 403 1555 1555 1.32 LINK O ALA A 30 NA NA A 406 1555 1555 2.62 LINK OG SER A 32 NA NA A 406 1555 1555 2.92 LINK OD1 ASN A 89 NA NA A 405 1555 1555 3.10 LINK OD1 ASN A 136 NA NA A 407 1555 1555 3.12 LINK O GLY A 139 NA NA A 405 1555 1555 2.64 LINK O GLY A 187 NA NA A 407 1555 1555 2.53 LINK OE1 GLN A 205 NA NA A 407 1555 1555 3.05 LINK O ALA A 322 NA NA A 408 1555 1555 2.55 LINK OG1 THR A 324 NA NA A 408 1555 1555 2.79 LINK OD1 ASN B 136 NA NA B 406 1555 1555 3.00 LINK O GLY B 187 NA NA B 406 1555 1555 2.67 CISPEP 1 GLY A 163 PRO A 164 0 -0.28 CISPEP 2 GLY A 259 PRO A 260 0 -3.35 CISPEP 3 GLY B 163 PRO B 164 0 1.34 CISPEP 4 GLY B 259 PRO B 260 0 -7.17 CRYST1 68.304 89.347 68.401 90.00 101.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014640 0.000000 0.002938 0.00000 SCALE2 0.000000 0.011192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014911 0.00000