HEADER OXIDOREDUCTASE 17-APR-19 6RGM TITLE URATE OXIDASE UNDER 130 BAR OF KRYPTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE LAST FIVE RESIDUES NOT OBSERVED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 GENE: UAZ, UOX; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS ASPERGILLUS FLAVUS, HOMOTETRAMER, PURINE METABOLISM, KRYPTON, HIGH KEYWDS 2 PRESSURE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.PRANGE,N.COLLOC'H,P.CARPENTIER REVDAT 3 24-JAN-24 6RGM 1 REMARK REVDAT 2 09-FEB-22 6RGM 1 JRNL REMARK LINK REVDAT 1 13-MAY-20 6RGM 0 JRNL AUTH T.PRANGE,P.CARPENTIER,A.C.DHAUSSY,E.GIRARD,N.COLLOC'H JRNL TITL COMPARATIVE STUDY OF THE EFFECTS OF HIGH HYDROSTATIC JRNL TITL 2 PRESSURE PER SE AND HIGH ARGON PRESSURE ON URATE OXIDASE JRNL TITL 3 LIGAND STABILIZATION JRNL REF ACTA CRYST. D V. 78 162 2022 JRNL DOI 10.1107/S2059798321012134 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.COLLOC'H,G.MARASSIO,T.PRANGE REMARK 1 TITL CURRENT TRENDS IN X-RAY CRYSTALLOGRAPHY. INTECH OPEN BOOKS REMARK 1 REF CURRENT TRENDS IN X-RAY 285 2011 REMARK 1 REF 2 CRYSTALLOGRAPHY REMARK 1 REFN ISSN 978-953-307-754-3 REMARK 1 DOI 10.5772/1421 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.LAFUMAT,C.MUELLER-DIECKMANN,G.LEONARD,N.COLLOC'H,T.PRANGE, REMARK 1 AUTH 2 T.GIRAUD,F.DOBIAS,A.ROYANT,P.VAN DER LINDEN,P.CARPENTIER REMARK 1 TITL GAS-SENSITIVE BIOLOGICAL CRYSTALS PROCESSED IN PRESSURIZED REMARK 1 TITL 2 OXYGEN AND KRYPTON ATMOSPHERES: DECIPHERING GAS CHANNELS IN REMARK 1 TITL 3 PROTEINS USING A NOVEL SOAK-AND-FREEZE METHODOLOGY REMARK 1 REF JOURNAL OF APPLIED V. 49 1478 2016 REMARK 1 REF 2 CRYSTALLOGRAPHY REMARK 1 REFN ESSN 1600-5767 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 511 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2568 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2366 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3489 ; 1.775 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5511 ; 1.538 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 7.458 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;35.266 ;22.782 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;14.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.288 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2853 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 528 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 1.942 ; 1.970 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1224 ; 1.902 ; 1.962 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1538 ; 2.816 ; 2.949 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1539 ; 2.815 ; 2.954 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 3.249 ; 2.304 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1342 ; 3.248 ; 2.303 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1944 ; 4.798 ; 3.321 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3120 ; 7.470 ;27.229 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2912 ; 6.763 ;24.711 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 70.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: 6IC1 REMARK 200 REMARK 200 REMARK: DIAMOND SHAPE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MICROLITERS OF PROTEIN+AZAXANTHIN, REMARK 280 PH 8 TRIS 0.05M MIXED WITH 20 MICROLITERS TRIS 0.05M + 10 % (V:V) REMARK 280 PEG 8000., PH 8.0, BATCH MODE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.47000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.04000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.04000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.47000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.04000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.12500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.47000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -261.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.25000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.94000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 78.25000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 104.08000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 94.94000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 104.08000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1672 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 297 REMARK 465 LYS A 298 REMARK 465 SER A 299 REMARK 465 LYS A 300 REMARK 465 LEU A 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1459 O HOH A 1639 2.09 REMARK 500 O HOH A 1463 O HOH A 1626 2.10 REMARK 500 OXT ACT A 1106 O HOH A 1201 2.11 REMARK 500 O HOH A 1216 O HOH A 1448 2.13 REMARK 500 O HOH A 1379 O HOH A 1607 2.19 REMARK 500 O HOH A 1229 O HOH A 1512 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 22 CA - C - O ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 22 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 SER A 124 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 SER A 124 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 118 27.47 -152.95 REMARK 500 SER A 124 176.22 89.10 REMARK 500 SER A 124 177.12 156.76 REMARK 500 ASP A 175 105.58 -165.61 REMARK 500 SER A 226 160.01 179.08 REMARK 500 ASN A 270 24.45 -141.33 REMARK 500 CYS A 290 144.05 -170.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 124 -12.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1707 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1708 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1709 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1710 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1711 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1111 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 88 O REMARK 620 2 TYR A 91 O 86.5 REMARK 620 3 ASN A 92 O 152.7 74.5 REMARK 620 4 ILE A 94 O 104.5 86.8 94.1 REMARK 620 5 GLU A 136 OE1 104.5 166.3 97.6 82.6 REMARK 620 6 HOH A1489 O 84.3 104.5 81.7 166.3 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZA A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KR A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KR A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1111 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IC1 RELATED DB: PDB REMARK 900 URATE OXIDASE UNDER 90 BAR OF KRYPTON DBREF 6RGM A 1 301 UNP Q00511 URIC_ASPFL 2 302 SEQADV 6RGM ACE A 1000 UNP Q00511 EXPRESSION TAG SEQRES 1 A 302 ACE SER ALA VAL LYS ALA ALA ARG TYR GLY LYS ASP ASN SEQRES 2 A 302 VAL ARG VAL TYR LYS VAL HIS LYS ASP GLU LYS THR GLY SEQRES 3 A 302 VAL GLN THR VAL TYR GLU MET THR VAL CYS VAL LEU LEU SEQRES 4 A 302 GLU GLY GLU ILE GLU THR SER TYR THR LYS ALA ASP ASN SEQRES 5 A 302 SER VAL ILE VAL ALA THR ASP SER ILE LYS ASN THR ILE SEQRES 6 A 302 TYR ILE THR ALA LYS GLN ASN PRO VAL THR PRO PRO GLU SEQRES 7 A 302 LEU PHE GLY SER ILE LEU GLY THR HIS PHE ILE GLU LYS SEQRES 8 A 302 TYR ASN HIS ILE HIS ALA ALA HIS VAL ASN ILE VAL CYS SEQRES 9 A 302 HIS ARG TRP THR ARG MET ASP ILE ASP GLY LYS PRO HIS SEQRES 10 A 302 PRO HIS SER PHE ILE ARG ASP SER GLU GLU LYS ARG ASN SEQRES 11 A 302 VAL GLN VAL ASP VAL VAL GLU GLY LYS GLY ILE ASP ILE SEQRES 12 A 302 LYS SER SER LEU SER GLY LEU THR VAL LEU LYS SER THR SEQRES 13 A 302 ASN SER GLN PHE TRP GLY PHE LEU ARG ASP GLU TYR THR SEQRES 14 A 302 THR LEU LYS GLU THR TRP ASP ARG ILE LEU SER THR ASP SEQRES 15 A 302 VAL ASP ALA THR TRP GLN TRP LYS ASN PHE SER GLY LEU SEQRES 16 A 302 GLN GLU VAL ARG SER HIS VAL PRO LYS PHE ASP ALA THR SEQRES 17 A 302 TRP ALA THR ALA ARG GLU VAL THR LEU LYS THR PHE ALA SEQRES 18 A 302 GLU ASP ASN SER ALA SER VAL GLN ALA THR MET TYR LYS SEQRES 19 A 302 MET ALA GLU GLN ILE LEU ALA ARG GLN GLN LEU ILE GLU SEQRES 20 A 302 THR VAL GLU TYR SER LEU PRO ASN LYS HIS TYR PHE GLU SEQRES 21 A 302 ILE ASP LEU SER TRP HIS LYS GLY LEU GLN ASN THR GLY SEQRES 22 A 302 LYS ASN ALA GLU VAL PHE ALA PRO GLN SER ASP PRO ASN SEQRES 23 A 302 GLY LEU ILE LYS CYS THR VAL GLY ARG SER SER LEU LYS SEQRES 24 A 302 SER LYS LEU HET ACE A1000 3 HET MPD A1101 8 HET MPD A1102 8 HET MPD A1103 8 HET ACT A1104 4 HET ACT A1105 4 HET ACT A1106 4 HET AZA A1107 11 HET KR A1108 1 HET KR A1109 1 HET KR A1110 1 HET NA A1111 1 HETNAM ACE ACETYL GROUP HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION HETNAM AZA 8-AZAXANTHINE HETNAM KR KRYPTON HETNAM NA SODIUM ION FORMUL 1 ACE C2 H4 O FORMUL 2 MPD 3(C6 H14 O2) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 AZA C4 H3 N5 O2 FORMUL 9 KR 3(KR) FORMUL 12 NA NA 1+ FORMUL 13 HOH *511(H2 O) HELIX 1 AA1 ILE A 42 LYS A 48 1 7 HELIX 2 AA2 ASP A 50 ILE A 54 5 5 HELIX 3 AA3 ALA A 56 ASN A 71 1 16 HELIX 4 AA4 PRO A 75 TYR A 91 1 17 HELIX 5 AA5 GLY A 193 HIS A 200 1 8 HELIX 6 AA6 HIS A 200 ASP A 222 1 23 HELIX 7 AA7 SER A 226 GLN A 242 1 17 HELIX 8 AA8 THR A 271 ALA A 275 5 5 SHEET 1 AA1 8 TYR A 8 LYS A 20 0 SHEET 2 AA1 8 GLN A 27 GLY A 40 -1 O LEU A 38 N TYR A 8 SHEET 3 AA1 8 ILE A 94 HIS A 104 -1 O HIS A 98 N LEU A 37 SHEET 4 AA1 8 LYS A 127 VAL A 135 -1 O VAL A 132 N VAL A 99 SHEET 5 AA1 8 GLY A 139 LYS A 153 -1 O ASP A 141 N ASP A 133 SHEET 6 AA1 8 LEU A 178 TRP A 188 -1 O VAL A 182 N LEU A 149 SHEET 7 AA1 8 ILE A 245 ASN A 254 -1 O GLU A 249 N THR A 185 SHEET 8 AA1 8 GLY A 286 VAL A 292 -1 O VAL A 292 N VAL A 248 SHEET 1 AA2 2 THR A 107 ILE A 111 0 SHEET 2 AA2 2 LYS A 114 ILE A 121 -1 O HIS A 116 N MET A 109 SHEET 1 AA3 2 TYR A 257 GLU A 259 0 SHEET 2 AA3 2 PHE A 278 PRO A 280 -1 O ALA A 279 N PHE A 258 LINK N SER A 1 C ACE A1000 1555 1555 1.32 LINK O ILE A 88 NA NA A1111 1555 1555 2.31 LINK O TYR A 91 NA NA A1111 1555 1555 2.47 LINK O ASN A 92 NA NA A1111 1555 1555 2.92 LINK O ILE A 94 NA NA A1111 1555 1555 2.31 LINK OE1 GLU A 136 NA NA A1111 1555 1555 2.58 LINK NA NA A1111 O HOH A1489 1555 1555 2.39 CISPEP 1 THR A 74 PRO A 75 0 -8.20 CISPEP 2 ASP A 283 PRO A 284 0 -8.18 SITE 1 AC1 3 HIS A 19 TYR A 30 HOH A1638 SITE 1 AC2 5 GLN A 158 TRP A 174 SER A 192 HOH A1247 SITE 2 AC2 5 HOH A1632 SITE 1 AC3 7 ILE A 66 THR A 67 GLN A 70 ASN A 71 SITE 2 AC3 7 HIS A 86 TYR A 167 HOH A1307 SITE 1 AC4 3 HOH A1209 HOH A1230 HOH A1391 SITE 1 AC5 4 HIS A 104 HOH A1208 HOH A1228 HOH A1432 SITE 1 AC6 6 GLY A 40 GLU A 43 HOH A1201 HOH A1215 SITE 2 AC6 6 HOH A1350 HOH A1382 SITE 1 AC7 10 ILE A 54 ALA A 56 THR A 57 PHE A 159 SITE 2 AC7 10 ARG A 176 SER A 226 VAL A 227 GLN A 228 SITE 3 AC7 10 ASN A 254 HOH A1410 SITE 1 AC8 4 VAL A 15 LYS A 17 TYR A 30 MET A 32 SITE 1 AC9 2 THR A 210 ILE A 238 SITE 1 AD1 6 ILE A 88 TYR A 91 ASN A 92 ILE A 94 SITE 2 AD1 6 GLU A 136 HOH A1489 CRYST1 78.250 94.940 104.080 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009608 0.00000 HETATM 1 C ACE A1000 60.905 57.309 19.781 1.00 44.00 C HETATM 2 O ACE A1000 60.405 56.307 19.406 1.00 44.00 O HETATM 3 CH3 ACE A1000 62.282 57.737 19.276 1.00 52.46 C