HEADER TRANSCRIPTION 17-APR-19 6RGX TITLE TETR(D) N82A MUTANT IN COMPLEX WITH DOXYCYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: STOP CODON AT 209 TO IMPROVE CRYSTALLIZATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TETR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PWH1950 KEYWDS TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.HINRICHS,G.J.PALM,L.BERNDT,B.GIRBARDT REVDAT 3 24-JAN-24 6RGX 1 HETSYN LINK REVDAT 2 18-MAR-20 6RGX 1 JRNL REVDAT 1 21-AUG-19 6RGX 0 JRNL AUTH G.J.PALM,I.BUCHHOLZ,S.WERTEN,B.GIRBARDT,L.BERNDT,M.DELCEA, JRNL AUTH 2 W.HINRICHS JRNL TITL THERMODYNAMICS, COOPERATIVITY AND STABILITY OF THE JRNL TITL 2 TETRACYCLINE REPRESSOR (TETR) UPON TETRACYCLINE BINDING. JRNL REF BIOCHIM BIOPHYS ACTA V.1868 40404 2020 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 32114262 JRNL DOI 10.1016/J.BBAPAP.2020.140404 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS REMARK 1 TITL MODULAR ORGANISATION OF INDUCER RECOGNITION AND ALLOSTERY IN REMARK 1 TITL 2 THE TETRACYCLINE REPRESSOR. REMARK 1 REF FEBS J. V. 283 2102 2016 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 27028290 REMARK 1 DOI 10.1111/FEBS.13723 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2039 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3312 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3114 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4486 ; 1.797 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7185 ; 1.507 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;33.633 ;21.237 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;13.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.953 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3720 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 706 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 1.798 ; 2.117 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1617 ; 1.798 ; 2.117 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2019 ; 3.005 ; 3.166 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2020 ; 3.004 ; 3.166 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1693 ; 2.013 ; 2.370 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1685 ; 2.017 ; 2.373 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2468 ; 3.288 ; 3.465 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3915 ; 5.527 ;25.464 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3885 ; 5.506 ;25.389 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 208 B 2 208 6110 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1527 11.6574 76.6763 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0808 REMARK 3 T33: 0.0466 T12: -0.0001 REMARK 3 T13: -0.0212 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.5935 L22: 0.0707 REMARK 3 L33: 3.1818 L12: 0.3264 REMARK 3 L13: 2.2149 L23: 0.4347 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.0253 S13: -0.0022 REMARK 3 S21: 0.0163 S22: 0.0039 S23: 0.0092 REMARK 3 S31: 0.0736 S32: -0.0613 S33: -0.0627 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 156 REMARK 3 RESIDUE RANGE : A 182 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3328 15.7080 50.2717 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.1046 REMARK 3 T33: 0.0435 T12: -0.0362 REMARK 3 T13: 0.0151 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.3248 L22: 0.0961 REMARK 3 L33: 1.2198 L12: -0.1717 REMARK 3 L13: -0.1275 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: -0.0575 S13: -0.0506 REMARK 3 S21: -0.0488 S22: 0.0495 S23: 0.0264 REMARK 3 S31: -0.1190 S32: 0.1482 S33: -0.1466 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2060 3.9888 53.9531 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.0574 REMARK 3 T33: 0.0318 T12: -0.0521 REMARK 3 T13: 0.0242 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.1759 L22: 1.2687 REMARK 3 L33: 0.5563 L12: 0.7907 REMARK 3 L13: -0.9233 L23: 0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0173 S13: -0.2171 REMARK 3 S21: 0.3273 S22: -0.1658 S23: -0.0132 REMARK 3 S31: 0.1782 S32: -0.0786 S33: 0.1760 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9254 23.5200 75.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.0420 T22: 0.1365 REMARK 3 T33: 0.0273 T12: 0.0066 REMARK 3 T13: -0.0026 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.5911 L22: 0.1502 REMARK 3 L33: 1.6712 L12: 0.0515 REMARK 3 L13: -0.8849 L23: 0.1030 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.1142 S13: -0.0210 REMARK 3 S21: -0.0483 S22: -0.0318 S23: 0.0253 REMARK 3 S31: -0.0246 S32: 0.0517 S33: 0.0461 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 156 REMARK 3 RESIDUE RANGE : B 182 B 208 REMARK 3 RESIDUE RANGE : B 301 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4392 18.8702 49.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0590 REMARK 3 T33: 0.0307 T12: -0.0203 REMARK 3 T13: -0.0128 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.3546 L22: 0.3071 REMARK 3 L33: 0.5853 L12: -0.0590 REMARK 3 L13: -0.0609 L23: 0.2546 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.0122 S13: -0.0202 REMARK 3 S21: -0.0440 S22: 0.0243 S23: 0.0275 REMARK 3 S31: -0.0547 S32: -0.0101 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 165 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7803 32.1671 52.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.0618 REMARK 3 T33: 0.1133 T12: -0.0563 REMARK 3 T13: 0.0345 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 10.6470 L22: 2.5348 REMARK 3 L33: 1.3291 L12: -5.1503 REMARK 3 L13: -0.0024 L23: 0.2390 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.4158 S13: -0.1469 REMARK 3 S21: 0.0018 S22: 0.2313 S23: 0.0641 REMARK 3 S31: -0.3715 S32: 0.1900 S33: -0.0920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 70 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.93500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5FKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 0.1 M HEPES PH 7.5, 1.75M REMARK 280 (NH4)2SO4, 5% PEG 400, 0.2M NACL, PROTEIN: 0.1ML PROTEIN, 0.3ML REMARK 280 2MM DOXYTC, 0.001ML 3M MGCL2, 100MM NACL, 50MM TRIS, PH 8.0, REMARK 280 PROTEIN/PRECIPITANT 2/2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.00400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.18900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.18900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.00600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.18900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.18900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.00200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.18900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.18900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.00600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.18900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.18900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.00200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.00400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 156 REMARK 465 ASP B 157 REMARK 465 ARG B 158 REMARK 465 PRO B 159 REMARK 465 ALA B 160 REMARK 465 ALA B 161 REMARK 465 PRO B 162 REMARK 465 ASP B 163 REMARK 465 GLU B 164 REMARK 465 ASN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 155 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 534 O HOH B 543 1.98 REMARK 500 OG SER B 138 O HOH B 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 3 CG - CD - NE ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 49 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR B 93 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 57.66 -109.44 REMARK 500 ASP A 157 -63.38 -93.90 REMARK 500 LEU A 204 -115.20 49.91 REMARK 500 LEU B 204 -119.25 51.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 471 O REMARK 620 2 DXT B 301 O11 94.1 REMARK 620 3 DXT B 301 O12 90.5 82.3 REMARK 620 4 HOH B 452 O 87.1 97.1 177.5 REMARK 620 5 HOH B 467 O 173.9 87.8 95.4 86.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DXT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 900 WILDTYPE PROTEIN REMARK 900 RELATED ID: 5FKK RELATED DB: PDB REMARK 900 SAME PROTEIN, OTHER LIGAND DBREF 6RGX A 3 208 UNP P0ACT4 TETR4_ECOLX 3 208 DBREF 6RGX B 3 208 UNP P0ACT4 TETR4_ECOLX 3 208 SEQADV 6RGX SER A 2 UNP P0ACT4 EXPRESSION TAG SEQADV 6RGX ALA A 82 UNP P0ACT4 ASN 82 CONFLICT SEQADV 6RGX SER B 2 UNP P0ACT4 EXPRESSION TAG SEQADV 6RGX ALA B 82 UNP P0ACT4 ASN 82 CONFLICT SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ALA ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL SEQRES 1 B 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 B 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 B 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 B 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 B 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 B 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 B 207 ARG ASN ALA ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 B 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 B 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 B 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 B 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 B 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 B 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 B 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 B 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 B 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET PG4 A 306 13 HET PGE A 307 10 HET DXT B 301 32 HET MG B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM DXT (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12, HETNAM 2 DXT 12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11, HETNAM 3 DXT 12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE HETNAM MG MAGNESIUM ION HETSYN DXT DOXYTETRACYCLINE; DOXYCYCLINE FORMUL 3 CL 10(CL 1-) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 PGE C6 H14 O4 FORMUL 10 DXT C22 H24 N2 O8 FORMUL 11 MG MG 2+ FORMUL 17 HOH *262(H2 O) HELIX 1 AA1 ASN A 5 LEU A 25 1 21 HELIX 2 AA2 THR A 26 LEU A 34 1 9 HELIX 3 AA3 GLU A 37 VAL A 45 1 9 HELIX 4 AA4 ASN A 47 HIS A 64 1 18 HELIX 5 AA5 SER A 74 ARG A 92 1 19 HELIX 6 AA6 ASP A 95 GLY A 102 1 8 HELIX 7 AA7 ASP A 106 ASN A 123 1 18 HELIX 8 AA8 SER A 126 ARG A 158 1 33 HELIX 9 AA9 PRO A 162 LEU A 166 5 5 HELIX 10 AB1 PRO A 167 ASP A 178 1 12 HELIX 11 AB2 GLY A 182 LEU A 204 1 23 HELIX 12 AB3 ASN B 5 LEU B 25 1 21 HELIX 13 AB4 THR B 26 LEU B 34 1 9 HELIX 14 AB5 GLU B 37 VAL B 45 1 9 HELIX 15 AB6 ASN B 47 HIS B 64 1 18 HELIX 16 AB7 SER B 74 ARG B 92 1 19 HELIX 17 AB8 ASP B 95 LEU B 101 1 7 HELIX 18 AB9 ASP B 106 LYS B 108 5 3 HELIX 19 AC1 GLN B 109 ASN B 123 1 15 HELIX 20 AC2 SER B 126 LEU B 155 1 30 HELIX 21 AC3 PRO B 167 ASP B 178 1 12 HELIX 22 AC4 GLY B 182 LEU B 204 1 23 LINK O HOH A 471 MG MG B 302 1555 1555 2.19 LINK O11 DXT B 301 MG MG B 302 1555 1555 1.95 LINK O12 DXT B 301 MG MG B 302 1555 1555 1.95 LINK MG MG B 302 O HOH B 452 1555 1555 2.09 LINK MG MG B 302 O HOH B 467 1555 1555 2.06 SITE 1 AC1 4 SER A 2 ARG A 3 SER A 74 SER A 77 SITE 1 AC2 5 ARG A 3 LEU A 4 GLN A 76 ARG A 80 SITE 2 AC2 5 HOH A 458 SITE 1 AC3 2 ASN A 5 GLU A 7 SITE 1 AC4 4 THR A 26 THR A 27 HOH A 485 HOH A 486 SITE 1 AC5 1 HOH B 540 SITE 1 AC6 4 SER A 67 PHE A 86 THR A 112 HOH A 474 SITE 1 AC7 3 ASN A 18 ARG A 92 HOH B 495 SITE 1 AC8 16 MET A 177 HOH A 471 HIS B 64 SER B 67 SITE 2 AC8 16 ALA B 82 PHE B 86 HIS B 100 ARG B 104 SITE 3 AC8 16 PRO B 105 GLN B 116 ILE B 134 MG B 302 SITE 4 AC8 16 HOH B 401 HOH B 443 HOH B 452 HOH B 467 SITE 1 AC9 5 HOH A 471 HIS B 100 DXT B 301 HOH B 452 SITE 2 AC9 5 HOH B 467 SITE 1 AD1 4 SER B 2 ARG B 3 SER B 74 SER B 77 SITE 1 AD2 5 ARG B 3 LEU B 4 GLN B 76 ARG B 80 SITE 2 AD2 5 HOH B 470 SITE 1 AD3 2 ASN B 5 GLU B 7 SITE 1 AD4 2 THR B 26 THR B 27 CRYST1 68.378 68.378 180.008 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005555 0.00000