HEADER SIGNALING PROTEIN 18-APR-19 6RH2 TITLE REVISITING PH-GATED CONFORMATIONAL SWITCH. COMPLEX HK853-RR468 D53A PH TITLE 2 5.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RESPONSE REGULATOR; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_0853; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 9 ORGANISM_TAXID: 2336; SOURCE 10 GENE: TM_0468; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE KINASE, RESPONSE REGULATOR, PHOSPHOTRANSFER, PHOSPHATASE, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MIDEROS-MORA,P.CASINO,A.MARINA REVDAT 2 24-JAN-24 6RH2 1 REMARK REVDAT 1 19-FEB-20 6RH2 0 JRNL AUTH C.MIDEROS-MORA,L.MIGUEL-ROMERO,A.FELIPE-RUIZ,P.CASINO, JRNL AUTH 2 A.MARINA JRNL TITL REVISITING THE PH-GATED CONFORMATIONAL SWITCH ON THE JRNL TITL 2 ACTIVITIES OF HISKA-FAMILY HISTIDINE KINASES. JRNL REF NAT COMMUN V. 11 769 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32034139 JRNL DOI 10.1038/S41467-020-14540-5 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 69680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5730 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5452 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7777 ; 1.127 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12637 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 705 ; 5.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;35.919 ;25.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;13.094 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;13.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6163 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1066 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2826 ; 1.843 ; 4.027 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2825 ; 1.843 ; 4.026 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3526 ; 2.460 ; 6.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3527 ; 2.460 ; 6.029 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 1.515 ; 4.411 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2857 ; 1.489 ; 4.389 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4179 ; 1.813 ; 6.445 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6211 ; 3.273 ;47.571 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6118 ; 2.916 ;47.067 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11182 ; 0.847 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 212 ;26.341 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 11236 ; 6.531 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 87.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 3DGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,2 M NH4SO4, 0,1M BISTRIS PH 5,3, PH REMARK 280 5.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.92645 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.06700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.80379 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.92645 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.06700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 87.80379 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -242.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 232 REMARK 465 GLU A 233 REMARK 465 ASN A 234 REMARK 465 VAL A 235 REMARK 465 THR A 236 REMARK 465 GLU A 237 REMARK 465 SER A 238 REMARK 465 LYS A 239 REMARK 465 GLU A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 ARG A 243 REMARK 465 LEU A 244 REMARK 465 LYS A 245 REMARK 465 ASP A 479 REMARK 465 ARG A 480 REMARK 465 ALA A 481 REMARK 465 GLY A 482 REMARK 465 GLU A 483 REMARK 465 ASP A 484 REMARK 465 ASN A 485 REMARK 465 ARG A 486 REMARK 465 GLN A 487 REMARK 465 ASP A 488 REMARK 465 ASN A 489 REMARK 465 VAL B 232 REMARK 465 GLU B 233 REMARK 465 ASN B 234 REMARK 465 VAL B 235 REMARK 465 THR B 236 REMARK 465 GLU B 237 REMARK 465 SER B 238 REMARK 465 LYS B 239 REMARK 465 GLU B 240 REMARK 465 LEU B 241 REMARK 465 GLU B 242 REMARK 465 ARG B 243 REMARK 465 LEU B 244 REMARK 465 LYS B 245 REMARK 465 ARG B 480 REMARK 465 ALA B 481 REMARK 465 GLY B 482 REMARK 465 GLU B 483 REMARK 465 ASP B 484 REMARK 465 ASN B 485 REMARK 465 ARG B 486 REMARK 465 GLN B 487 REMARK 465 ASP B 488 REMARK 465 ASN B 489 REMARK 465 MET C 1 REMARK 465 GLU C 122 REMARK 465 MET D 1 REMARK 465 GLU D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ASP A 422 CG OD1 OD2 REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 470 ARG B 246 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 GLU B 334 CG CD OE1 OE2 REMARK 470 LYS B 341 CG CD CE NZ REMARK 470 GLU B 451 CG CD OE1 OE2 REMARK 470 LYS B 468 CG CD CE NZ REMARK 470 ASP B 479 CG OD1 OD2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 88 CG CD OE1 OE2 REMARK 470 ARG D 100 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 321 CZ PHE B 473 4445 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 428 -5.44 71.00 REMARK 500 PHE B 428 -4.42 72.00 REMARK 500 VAL C 58 -61.05 71.97 REMARK 500 VAL D 58 -63.92 70.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 204 DBREF 6RH2 A 232 489 UNP Q9WZV7 Q9WZV7_THEMA 232 489 DBREF 6RH2 B 232 489 UNP Q9WZV7 Q9WZV7_THEMA 232 489 DBREF 6RH2 C 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 DBREF 6RH2 D 1 122 UNP Q9WYT9 Q9WYT9_THEMA 1 122 SEQADV 6RH2 ALA C 53 UNP Q9WYT9 ASP 53 ENGINEERED MUTATION SEQADV 6RH2 ALA D 53 UNP Q9WYT9 ASP 53 ENGINEERED MUTATION SEQRES 1 A 258 VAL GLU ASN VAL THR GLU SER LYS GLU LEU GLU ARG LEU SEQRES 2 A 258 LYS ARG ILE ASP ARG MET LYS THR GLU PHE ILE ALA ASN SEQRES 3 A 258 ILE SER HIS GLU LEU ARG THR PRO LEU THR ALA ILE LYS SEQRES 4 A 258 ALA TYR ALA GLU THR ILE TYR ASN SER LEU GLY GLU LEU SEQRES 5 A 258 ASP LEU SER THR LEU LYS GLU PHE LEU GLU VAL ILE ILE SEQRES 6 A 258 ASP GLN SER ASN HIS LEU GLU ASN LEU LEU ASN GLU LEU SEQRES 7 A 258 LEU ASP PHE SER ARG LEU GLU ARG LYS SER LEU GLN ILE SEQRES 8 A 258 ASN ARG GLU LYS VAL ASP LEU CYS ASP LEU VAL GLU SER SEQRES 9 A 258 ALA VAL ASN ALA ILE LYS GLU PHE ALA SER SER HIS ASN SEQRES 10 A 258 VAL ASN VAL LEU PHE GLU SER ASN VAL PRO CYS PRO VAL SEQRES 11 A 258 GLU ALA TYR ILE ASP PRO THR ARG ILE ARG GLN VAL LEU SEQRES 12 A 258 LEU ASN LEU LEU ASN ASN GLY VAL LYS TYR SER LYS LYS SEQRES 13 A 258 ASP ALA PRO ASP LYS TYR VAL LYS VAL ILE LEU ASP GLU SEQRES 14 A 258 LYS ASP GLY GLY VAL LEU ILE ILE VAL GLU ASP ASN GLY SEQRES 15 A 258 ILE GLY ILE PRO ASP HIS ALA LYS ASP ARG ILE PHE GLU SEQRES 16 A 258 GLN PHE TYR ARG VAL ASP SER SER LEU THR TYR GLU VAL SEQRES 17 A 258 PRO GLY THR GLY LEU GLY LEU ALA ILE THR LYS GLU ILE SEQRES 18 A 258 VAL GLU LEU HIS GLY GLY ARG ILE TRP VAL GLU SER GLU SEQRES 19 A 258 VAL GLY LYS GLY SER ARG PHE PHE VAL TRP ILE PRO LYS SEQRES 20 A 258 ASP ARG ALA GLY GLU ASP ASN ARG GLN ASP ASN SEQRES 1 B 258 VAL GLU ASN VAL THR GLU SER LYS GLU LEU GLU ARG LEU SEQRES 2 B 258 LYS ARG ILE ASP ARG MET LYS THR GLU PHE ILE ALA ASN SEQRES 3 B 258 ILE SER HIS GLU LEU ARG THR PRO LEU THR ALA ILE LYS SEQRES 4 B 258 ALA TYR ALA GLU THR ILE TYR ASN SER LEU GLY GLU LEU SEQRES 5 B 258 ASP LEU SER THR LEU LYS GLU PHE LEU GLU VAL ILE ILE SEQRES 6 B 258 ASP GLN SER ASN HIS LEU GLU ASN LEU LEU ASN GLU LEU SEQRES 7 B 258 LEU ASP PHE SER ARG LEU GLU ARG LYS SER LEU GLN ILE SEQRES 8 B 258 ASN ARG GLU LYS VAL ASP LEU CYS ASP LEU VAL GLU SER SEQRES 9 B 258 ALA VAL ASN ALA ILE LYS GLU PHE ALA SER SER HIS ASN SEQRES 10 B 258 VAL ASN VAL LEU PHE GLU SER ASN VAL PRO CYS PRO VAL SEQRES 11 B 258 GLU ALA TYR ILE ASP PRO THR ARG ILE ARG GLN VAL LEU SEQRES 12 B 258 LEU ASN LEU LEU ASN ASN GLY VAL LYS TYR SER LYS LYS SEQRES 13 B 258 ASP ALA PRO ASP LYS TYR VAL LYS VAL ILE LEU ASP GLU SEQRES 14 B 258 LYS ASP GLY GLY VAL LEU ILE ILE VAL GLU ASP ASN GLY SEQRES 15 B 258 ILE GLY ILE PRO ASP HIS ALA LYS ASP ARG ILE PHE GLU SEQRES 16 B 258 GLN PHE TYR ARG VAL ASP SER SER LEU THR TYR GLU VAL SEQRES 17 B 258 PRO GLY THR GLY LEU GLY LEU ALA ILE THR LYS GLU ILE SEQRES 18 B 258 VAL GLU LEU HIS GLY GLY ARG ILE TRP VAL GLU SER GLU SEQRES 19 B 258 VAL GLY LYS GLY SER ARG PHE PHE VAL TRP ILE PRO LYS SEQRES 20 B 258 ASP ARG ALA GLY GLU ASP ASN ARG GLN ASP ASN SEQRES 1 C 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 C 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 C 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 C 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 C 122 ALA ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 C 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 C 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 C 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 C 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 C 122 HIS LEU LEU ASN GLU SEQRES 1 D 122 MET SER LYS LYS VAL LEU LEU VAL ASP ASP SER ALA VAL SEQRES 2 D 122 LEU ARG LYS ILE VAL SER PHE ASN LEU LYS LYS GLU GLY SEQRES 3 D 122 TYR GLU VAL ILE GLU ALA GLU ASN GLY GLN ILE ALA LEU SEQRES 4 D 122 GLU LYS LEU SER GLU PHE THR PRO ASP LEU ILE VAL LEU SEQRES 5 D 122 ALA ILE MET MET PRO VAL MET ASP GLY PHE THR VAL LEU SEQRES 6 D 122 LYS LYS LEU GLN GLU LYS GLU GLU TRP LYS ARG ILE PRO SEQRES 7 D 122 VAL ILE VAL LEU THR ALA LYS GLY GLY GLU GLU ASP GLU SEQRES 8 D 122 SER LEU ALA LEU SER LEU GLY ALA ARG LYS VAL MET ARG SEQRES 9 D 122 LYS PRO PHE SER PRO SER GLN PHE ILE GLU GLU VAL LYS SEQRES 10 D 122 HIS LEU LEU ASN GLU HET ADP A 501 27 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET ADP B 501 27 HET SO4 B 502 5 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET SO4 D 201 5 HET SO4 D 202 5 HET SO4 D 203 5 HET SO4 D 204 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 6 SO4 12(O4 S 2-) FORMUL 19 HOH *336(H2 O) HELIX 1 AA1 ILE A 247 SER A 279 1 33 HELIX 2 AA2 LEU A 280 LEU A 283 5 4 HELIX 3 AA3 ASP A 284 ARG A 317 1 34 HELIX 4 AA4 LEU A 329 ILE A 340 1 12 HELIX 5 AA5 ILE A 340 HIS A 347 1 8 HELIX 6 AA6 ASP A 366 TYR A 384 1 19 HELIX 7 AA7 PRO A 417 ASP A 422 1 6 HELIX 8 AA8 LEU A 444 HIS A 456 1 13 HELIX 9 AA9 ILE B 247 SER B 279 1 33 HELIX 10 AB1 ASP B 284 ARG B 317 1 34 HELIX 11 AB2 LEU B 329 ILE B 340 1 12 HELIX 12 AB3 ILE B 340 HIS B 347 1 8 HELIX 13 AB4 ASP B 366 TYR B 384 1 19 HELIX 14 AB5 PRO B 417 ASP B 422 1 6 HELIX 15 AB6 LEU B 444 HIS B 456 1 13 HELIX 16 AB7 SER C 11 GLU C 25 1 15 HELIX 17 AB8 ASN C 34 LEU C 42 1 9 HELIX 18 AB9 ASP C 60 GLU C 70 1 11 HELIX 19 AC1 GLY C 87 LEU C 97 1 11 HELIX 20 AC2 SER C 108 ASN C 121 1 14 HELIX 21 AC3 SER D 11 GLU D 25 1 15 HELIX 22 AC4 ASN D 34 LEU D 42 1 9 HELIX 23 AC5 ASP D 60 LYS D 71 1 12 HELIX 24 AC6 LYS D 71 ARG D 76 1 6 HELIX 25 AC7 GLY D 87 LEU D 97 1 11 HELIX 26 AC8 SER D 108 ASN D 121 1 14 SHEET 1 AA1 2 GLU A 325 ASP A 328 0 SHEET 2 AA1 2 GLU A 362 ILE A 365 -1 O ILE A 365 N GLU A 325 SHEET 1 AA2 5 ASN A 350 SER A 355 0 SHEET 2 AA2 5 TYR A 393 GLU A 400 1 O VAL A 394 N LEU A 352 SHEET 3 AA2 5 GLY A 404 ASP A 411 -1 O LEU A 406 N ASP A 399 SHEET 4 AA2 5 GLY A 469 PRO A 477 -1 O VAL A 474 N ILE A 407 SHEET 5 AA2 5 ARG A 459 GLU A 465 -1 N GLU A 463 O ARG A 471 SHEET 1 AA3 2 GLU B 325 ASP B 328 0 SHEET 2 AA3 2 GLU B 362 ILE B 365 -1 O ILE B 365 N GLU B 325 SHEET 1 AA4 5 ASN B 350 SER B 355 0 SHEET 2 AA4 5 TYR B 393 LYS B 401 1 O VAL B 396 N GLU B 354 SHEET 3 AA4 5 GLY B 404 ASP B 411 -1 O LEU B 406 N ASP B 399 SHEET 4 AA4 5 GLY B 469 PRO B 477 -1 O VAL B 474 N ILE B 407 SHEET 5 AA4 5 ARG B 459 GLU B 465 -1 N GLU B 463 O ARG B 471 SHEET 1 AA5 5 GLU C 28 ALA C 32 0 SHEET 2 AA5 5 LYS C 4 VAL C 8 1 N LEU C 7 O ILE C 30 SHEET 3 AA5 5 LEU C 49 LEU C 52 1 O VAL C 51 N VAL C 8 SHEET 4 AA5 5 VAL C 79 THR C 83 1 O ILE C 80 N ILE C 50 SHEET 5 AA5 5 LYS C 101 ARG C 104 1 O MET C 103 N VAL C 81 SHEET 1 AA6 5 GLU D 28 ALA D 32 0 SHEET 2 AA6 5 LYS D 4 VAL D 8 1 N LEU D 7 O ILE D 30 SHEET 3 AA6 5 LEU D 49 LEU D 52 1 O VAL D 51 N VAL D 8 SHEET 4 AA6 5 VAL D 79 THR D 83 1 O ILE D 80 N ILE D 50 SHEET 5 AA6 5 LYS D 101 ARG D 104 1 O MET D 103 N VAL D 81 SSBOND 1 CYS A 330 CYS A 359 1555 1555 2.04 SSBOND 2 CYS B 330 CYS B 359 1555 1555 2.03 CISPEP 1 CYS A 359 PRO A 360 0 3.63 CISPEP 2 CYS B 359 PRO B 360 0 -0.90 CISPEP 3 LYS C 105 PRO C 106 0 1.31 CISPEP 4 LYS D 105 PRO D 106 0 0.16 SITE 1 AC1 24 ASN A 376 ASN A 380 LYS A 383 TYR A 384 SITE 2 AC1 24 ASP A 411 ILE A 416 ILE A 424 TYR A 429 SITE 3 AC1 24 ARG A 430 VAL A 431 GLY A 441 THR A 442 SITE 4 AC1 24 GLY A 443 GLY A 445 LEU A 446 SER A 470 SITE 5 AC1 24 HOH A 609 HOH A 616 HOH A 618 HOH A 620 SITE 6 AC1 24 HOH A 622 HOH A 651 HOH A 658 HOH A 660 SITE 1 AC2 5 LYS A 270 GLU A 274 ASN B 300 SER C 108 SITE 2 AC2 5 GLN C 111 SITE 1 AC3 5 ARG A 314 ARG A 317 HIS B 260 LYS D 85 SITE 2 AC3 5 SO4 D 204 SITE 1 AC4 6 HIS A 260 LYS A 401 ARG B 314 ARG B 317 SITE 2 AC4 6 LYS C 85 SO4 C 204 SITE 1 AC5 22 ASN B 376 ASN B 380 LYS B 383 TYR B 384 SITE 2 AC5 22 ASP B 411 ILE B 416 ILE B 424 TYR B 429 SITE 3 AC5 22 ARG B 430 VAL B 431 GLY B 441 THR B 442 SITE 4 AC5 22 GLY B 443 GLY B 445 LEU B 446 SER B 470 SITE 5 AC5 22 HOH B 608 HOH B 611 HOH B 615 HOH B 620 SITE 6 AC5 22 HOH B 621 HOH B 662 SITE 1 AC6 7 ASN A 300 LYS B 270 GLU B 274 HOH B 624 SITE 2 AC6 7 SER D 108 GLN D 111 HOH D 302 SITE 1 AC7 7 ALA C 53 ILE C 54 MET C 55 THR C 83 SITE 2 AC7 7 ALA C 84 LYS C 105 HOH C 333 SITE 1 AC8 7 SER A 346 ASP C 10 SER C 11 ALA C 12 SITE 2 AC8 7 VAL C 13 HOH C 318 HOH C 319 SITE 1 AC9 3 MET C 103 ARG C 104 HOH C 306 SITE 1 AD1 4 LYS A 401 ASP A 402 SO4 A 504 LYS C 85 SITE 1 AD2 8 ALA D 53 ILE D 54 MET D 55 THR D 83 SITE 2 AD2 8 ALA D 84 LYS D 105 HOH D 325 HOH D 331 SITE 1 AD3 8 SER B 346 ASP D 10 SER D 11 ALA D 12 SITE 2 AD3 8 VAL D 13 HOH D 311 HOH D 313 HOH D 327 SITE 1 AD4 4 VAL D 102 MET D 103 ARG D 104 HOH D 307 SITE 1 AD5 6 SO4 A 503 GLU B 400 LYS B 401 ASP B 402 SITE 2 AD5 6 LYS D 85 HOH D 310 CRYST1 68.532 92.134 175.932 90.00 93.48 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014592 0.000000 0.000886 0.00000 SCALE2 0.000000 0.010854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005694 0.00000