HEADER HYDROLASE 19-APR-19 6RHE TITLE CPOGA D298N IN COMPLEX WITH HOGA-DERIVED S-GLCNAC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE NAGJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-N-ACETYLGLUCOSAMINIDASE,BETA-N-ACETYLHEXOSAMINIDASE, COMPND 5 BETA-HEXOSAMINIDASE,GH84C,HEXOSAMINIDASE B,N-ACETYL-BETA-D- COMPND 6 GLUCOSAMINIDASE; COMPND 7 EC: 3.2.1.169; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ACE-ALA-HIS-CYS-GLY-NH2; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS ATCC 13124; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 STRAIN: ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / SOURCE 5 TYPE A; SOURCE 6 GENE: NAGJ, CPF_1442; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS N-ACETYL GLUCOSAMINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.VAN AALTEN,S.G.BARTUAL,A.GORELIK REVDAT 4 07-FEB-24 6RHE 1 REMARK REVDAT 3 15-MAR-23 6RHE 1 COMPND SOURCE KEYWDS SEQRES REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 LINK ATOM REVDAT 2 29-JUL-20 6RHE 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 25-DEC-19 6RHE 0 JRNL AUTH A.GORELIK,S.G.BARTUAL,V.S.BORODKIN,J.VARGHESE,A.T.FERENBACH, JRNL AUTH 2 D.M.F.VAN AALTEN JRNL TITL GENETIC RECODING TO DISSECT THE ROLES OF SITE-SPECIFIC JRNL TITL 2 PROTEIN O-GLCNACYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 1071 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31695185 JRNL DOI 10.1038/S41594-019-0325-8 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 18829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -6.42000 REMARK 3 B12 (A**2) : 0.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 5.964 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.375 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4739 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4208 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6435 ; 1.666 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9821 ; 1.608 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;38.994 ;24.847 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;16.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5372 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 935 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2329 ; 6.184 ; 8.010 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2326 ; 6.177 ; 8.006 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2908 ; 8.905 ;12.040 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2908 ; 8.906 ;12.040 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2410 ; 7.530 ; 8.712 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2411 ; 7.529 ; 8.712 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3528 ;11.369 ;12.801 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 20357 ;14.841 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 20357 ;14.842 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19800 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 DROPS OF PROYTEIN MIXED WITH REMARK 280 CRYSTALLISATION BUFFER: 0.175 M CDSO4 AND 0.6 M NAAC, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.95000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 VAL A 31 REMARK 465 GLY A 32 REMARK 465 PRO A 33 REMARK 465 LYS A 34 REMARK 465 THR A 35 REMARK 465 GLY A 36 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 ASN A 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 51 O HOH A 801 2.02 REMARK 500 OE1 GLU A 76 O HOH A 802 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 131 -2.75 81.69 REMARK 500 SER A 166 -9.63 77.78 REMARK 500 THR A 191 106.82 -53.24 REMARK 500 ALA A 216 49.03 -154.86 REMARK 500 ARG A 224 -68.65 -143.84 REMARK 500 ASP A 262 16.53 -146.50 REMARK 500 SER A 303 77.53 -69.24 REMARK 500 PHE A 318 -67.96 -122.61 REMARK 500 PHE A 403 69.98 -166.00 REMARK 500 THR A 489 -85.05 -128.93 REMARK 500 ALA A 498 68.83 13.66 REMARK 500 VAL A 608 -89.11 -125.55 REMARK 500 LEU A 617 45.19 -95.29 REMARK 500 SER A 618 54.63 -150.14 REMARK 500 PHE A 619 -136.38 46.95 REMARK 500 HIS D 3 -168.95 175.21 REMARK 500 CYS D 4 -156.11 -89.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 713 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE2 REMARK 620 2 ASN A 450 OD1 67.8 REMARK 620 3 ASP A 452 OD1 125.0 64.4 REMARK 620 4 HOH A 801 O 60.4 67.3 77.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 704 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 GLU A 272 OE1 45.1 REMARK 620 3 HOH A 813 O 70.3 115.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 708 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 68 O REMARK 620 2 GLU A 71 OE1 88.1 REMARK 620 3 GLU A 71 OE2 111.5 51.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 709 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 O REMARK 620 2 GLU A 108 OE1 101.9 REMARK 620 3 ASP A 111 OD1 100.9 111.6 REMARK 620 4 ASP A 111 OD2 74.5 76.1 50.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 706 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD2 REMARK 620 2 GLU A 550 OE2 32.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD1 REMARK 620 2 GLU A 145 OE2 125.8 REMARK 620 3 GLU A 545 OE1 135.8 28.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 717 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 GLU A 549 OE1 50.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 702 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD2 REMARK 620 2 ASP A 268 OD2 45.7 REMARK 620 3 HOH A 807 O 87.1 126.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 711 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 170 OE1 REMARK 620 2 GLU A 170 OE2 53.3 REMARK 620 3 HOH A 809 O 70.8 72.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 715 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 272 OE2 REMARK 620 2 HOH A 821 O 74.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 703 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 282 OE2 REMARK 620 2 ASP A 286 OD1 80.5 REMARK 620 3 ASP A 286 OD2 98.0 53.5 REMARK 620 4 GLU A 588 OE1 66.3 45.9 32.0 REMARK 620 5 GLU A 588 OE2 67.6 45.3 30.8 1.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 712 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 362 OE1 REMARK 620 2 GLU A 362 OE2 53.3 REMARK 620 3 ASP A 424 OD2 91.1 116.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 716 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 413 NE2 REMARK 620 2 HOH A 825 O 86.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 714 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 474 OD2 REMARK 620 2 GLU A 534 OE2 98.1 REMARK 620 N 1 DBREF 6RHE A 31 619 UNP Q0TR53 OGA_CLOP1 31 619 DBREF 6RHE D 1 6 PDB 6RHE 6RHE 1 6 SEQADV 6RHE GLY A 29 UNP Q0TR53 EXPRESSION TAG SEQADV 6RHE SER A 30 UNP Q0TR53 EXPRESSION TAG SEQADV 6RHE ASN A 298 UNP Q0TR53 ASP 298 ENGINEERED MUTATION SEQADV 6RHE ASP A 388 UNP Q0TR53 ASN 388 CONFLICT SEQADV 6RHE ALA A 620 UNP Q0TR53 EXPRESSION TAG SEQRES 1 A 592 GLY SER VAL GLY PRO LYS THR GLY GLU GLU ASN GLN VAL SEQRES 2 A 592 LEU VAL PRO ASN LEU ASN PRO THR PRO GLU ASN LEU GLU SEQRES 3 A 592 VAL VAL GLY ASP GLY PHE LYS ILE THR SER SER ILE ASN SEQRES 4 A 592 LEU VAL GLY GLU GLU GLU ALA ASP GLU ASN ALA VAL ASN SEQRES 5 A 592 ALA LEU ARG GLU PHE LEU THR ALA ASN ASN ILE GLU ILE SEQRES 6 A 592 ASN SER GLU ASN ASP PRO ASN SER THR THR LEU ILE ILE SEQRES 7 A 592 GLY GLU VAL ASP ASP ASP ILE PRO GLU LEU ASP GLU ALA SEQRES 8 A 592 LEU ASN GLY THR THR ALA GLU ASN LEU LYS GLU GLU GLY SEQRES 9 A 592 TYR ALA LEU VAL SER ASN ASP GLY LYS ILE ALA ILE GLU SEQRES 10 A 592 GLY LYS ASP GLY ASP GLY THR PHE TYR GLY VAL GLN THR SEQRES 11 A 592 PHE LYS GLN LEU VAL LYS GLU SER ASN ILE PRO GLU VAL SEQRES 12 A 592 ASN ILE THR ASP TYR PRO THR VAL SER ALA ARG GLY ILE SEQRES 13 A 592 VAL GLU GLY PHE TYR GLY THR PRO TRP THR HIS GLN ASP SEQRES 14 A 592 ARG LEU ASP GLN ILE LYS PHE TYR GLY GLU ASN LYS LEU SEQRES 15 A 592 ASN THR TYR ILE TYR ALA PRO LYS ASP ASP PRO TYR HIS SEQRES 16 A 592 ARG GLU LYS TRP ARG GLU PRO TYR PRO GLU SER GLU MET SEQRES 17 A 592 GLN ARG MET GLN GLU LEU ILE ASN ALA SER ALA GLU ASN SEQRES 18 A 592 LYS VAL ASP PHE VAL PHE GLY ILE SER PRO GLY ILE ASP SEQRES 19 A 592 ILE ARG PHE ASP GLY ASP ALA GLY GLU GLU ASP PHE ASN SEQRES 20 A 592 HIS LEU ILE THR LYS ALA GLU SER LEU TYR ASP MET GLY SEQRES 21 A 592 VAL ARG SER PHE ALA ILE TYR TRP ASP ASN ILE GLN ASP SEQRES 22 A 592 LYS SER ALA ALA LYS HIS ALA GLN VAL LEU ASN ARG PHE SEQRES 23 A 592 ASN GLU GLU PHE VAL LYS ALA LYS GLY ASP VAL LYS PRO SEQRES 24 A 592 LEU ILE THR VAL PRO THR GLU TYR ASP THR GLY ALA MET SEQRES 25 A 592 VAL SER ASN GLY GLN PRO ARG ALA TYR THR ARG ILE PHE SEQRES 26 A 592 ALA GLU THR VAL ASP PRO SER ILE GLU VAL MET TRP THR SEQRES 27 A 592 GLY PRO GLY VAL VAL THR ASN GLU ILE PRO LEU SER ASP SEQRES 28 A 592 ALA GLN LEU ILE SER GLY ILE TYR ASP ARG ASN MET ALA SEQRES 29 A 592 VAL TRP TRP ASN TYR PRO VAL THR ASP TYR PHE LYS GLY SEQRES 30 A 592 LYS LEU ALA LEU GLY PRO MET HIS GLY LEU ASP LYS GLY SEQRES 31 A 592 LEU ASN GLN TYR VAL ASP PHE PHE THR VAL ASN PRO MET SEQRES 32 A 592 GLU HIS ALA GLU LEU SER LYS ILE SER ILE HIS THR ALA SEQRES 33 A 592 ALA ASP TYR SER TRP ASN MET ASP ASN TYR ASP TYR ASP SEQRES 34 A 592 LYS ALA TRP ASN ARG ALA ILE ASP MET LEU TYR GLY ASP SEQRES 35 A 592 LEU ALA GLU ASP MET LYS VAL PHE ALA ASN HIS SER THR SEQRES 36 A 592 ARG MET ASP ASN LYS THR TRP ALA LYS SER GLY ARG GLU SEQRES 37 A 592 ASP ALA PRO GLU LEU ARG ALA LYS MET ASP GLU LEU TRP SEQRES 38 A 592 ASN LYS LEU SER SER LYS GLU ASP ALA SER ALA LEU ILE SEQRES 39 A 592 GLU GLU LEU TYR GLY GLU PHE ALA ARG MET GLU GLU ALA SEQRES 40 A 592 CYS ASN ASN LEU LYS ALA ASN LEU PRO GLU VAL ALA LEU SEQRES 41 A 592 GLU GLU CYS SER ARG GLN LEU ASP GLU LEU ILE THR LEU SEQRES 42 A 592 ALA GLN GLY ASP LYS ALA SER LEU ASP MET ILE VAL ALA SEQRES 43 A 592 GLN LEU ASN GLU ASP THR GLU ALA TYR GLU SER ALA LYS SEQRES 44 A 592 GLU ILE ALA GLN ASN LYS LEU ASN THR ALA LEU SER SER SEQRES 45 A 592 PHE ALA VAL ILE SER GLU LYS VAL ALA GLN SER PHE ILE SEQRES 46 A 592 GLN GLU ALA LEU SER PHE ALA SEQRES 1 D 6 ACE ALA HIS CYS GLY NH2 HET ACE D 1 3 HET NH2 D 6 1 HET CD A 701 1 HET CD A 702 1 HET CD A 703 1 HET CD A 704 1 HET CD A 705 1 HET CD A 706 1 HET CD A 707 1 HET CD A 708 1 HET CD A 709 1 HET CD A 710 1 HET CD A 711 1 HET CD A 712 1 HET CD A 713 1 HET CD A 714 1 HET CD A 715 1 HET CD A 716 1 HET CD A 717 1 HET CD A 718 1 HET CD A 719 1 HET CD A 720 1 HET CD A 721 1 HET CD A 722 1 HET CD A 723 1 HET CD A 724 1 HET NAG A 725 14 HET CD D 101 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM CD CADMIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 ACE C2 H4 O FORMUL 2 NH2 H2 N FORMUL 3 CD 25(CD 2+) FORMUL 27 NAG C8 H15 N O6 FORMUL 29 HOH *28(H2 O) HELIX 1 AA1 ASP A 75 ASN A 89 1 15 HELIX 2 AA2 ILE A 113 ASN A 121 1 9 HELIX 3 AA3 ASP A 148 VAL A 163 1 16 HELIX 4 AA4 THR A 194 ASN A 208 1 15 HELIX 5 AA5 PRO A 232 ASN A 249 1 18 HELIX 6 AA6 ASP A 266 ASP A 286 1 21 HELIX 7 AA7 SER A 303 PHE A 318 1 16 HELIX 8 AA8 PHE A 318 GLY A 323 1 6 HELIX 9 AA9 ASP A 336 MET A 340 1 5 HELIX 10 AB1 ARG A 347 VAL A 357 1 11 HELIX 11 AB2 PRO A 376 ASP A 388 1 13 HELIX 12 AB3 GLY A 418 GLN A 421 5 4 HELIX 13 AB4 HIS A 433 ASN A 450 1 18 HELIX 14 AB5 ASP A 455 GLY A 469 1 15 HELIX 15 AB6 LEU A 471 ASN A 480 1 10 HELIX 16 AB7 ALA A 498 SER A 514 1 17 HELIX 17 AB8 ALA A 518 LEU A 543 1 26 HELIX 18 AB9 PRO A 544 ASN A 577 1 34 HELIX 19 AC1 ASP A 579 SER A 600 1 22 HELIX 20 AC2 VAL A 608 LEU A 617 1 10 SHEET 1 AA1 7 ASN A 52 VAL A 55 0 SHEET 2 AA1 7 VAL A 171 ASP A 175 -1 O ASN A 172 N GLU A 54 SHEET 3 AA1 7 TYR A 133 ASN A 138 -1 N LEU A 135 O ILE A 173 SHEET 4 AA1 7 LYS A 141 GLY A 146 -1 O ALA A 143 N VAL A 136 SHEET 5 AA1 7 THR A 103 GLU A 108 1 N ILE A 105 O ILE A 144 SHEET 6 AA1 7 SER A 65 VAL A 69 1 N ASN A 67 O LEU A 104 SHEET 7 AA1 7 GLU A 92 ILE A 93 1 O GLU A 92 N ILE A 66 SHEET 1 AA2 2 PHE A 60 LYS A 61 0 SHEET 2 AA2 2 ASN A 167 ILE A 168 -1 O ILE A 168 N PHE A 60 SHEET 1 AA3 9 ALA A 181 GLU A 186 0 SHEET 2 AA3 9 THR A 212 TYR A 215 1 O ILE A 214 N ILE A 184 SHEET 3 AA3 9 ASP A 252 ILE A 257 1 O VAL A 254 N TYR A 215 SHEET 4 AA3 9 SER A 291 TYR A 295 1 O TYR A 295 N ILE A 257 SHEET 5 AA3 9 ILE A 329 VAL A 331 1 O ILE A 329 N ILE A 294 SHEET 6 AA3 9 GLU A 362 TRP A 365 1 O MET A 364 N THR A 330 SHEET 7 AA3 9 MET A 391 TRP A 395 1 O ALA A 392 N VAL A 363 SHEET 8 AA3 9 VAL A 423 VAL A 428 1 O THR A 427 N TRP A 395 SHEET 9 AA3 9 ALA A 181 GLU A 186 1 N ALA A 181 O PHE A 426 SHEET 1 AA4 2 VAL A 341 SER A 342 0 SHEET 2 AA4 2 GLN A 345 PRO A 346 -1 O GLN A 345 N SER A 342 SHEET 1 AA5 2 MET A 485 ASP A 486 0 SHEET 2 AA5 2 LYS A 492 SER A 493 -1 O SER A 493 N MET A 485 LINK C1 NAG A 725 SG CYS D 4 1555 1555 1.76 LINK C ACE D 1 N ALA D 2 1555 1555 1.37 LINK C GLY D 5 N NH2 D 6 1555 1555 1.33 LINK OE2 GLU A 51 CD CD A 713 1555 1555 2.06 LINK OD2 ASP A 58 CD CD A 704 1555 1555 2.39 LINK O LEU A 68 CD CD A 708 1555 1555 2.44 LINK OE1 GLU A 71 CD CD A 708 1555 1555 2.56 LINK OE2 GLU A 71 CD CD A 708 1555 1555 2.58 LINK O GLU A 73 CD CD A 709 1555 1555 2.46 LINK OE1 GLU A 108 CD CD A 709 1555 1555 2.20 LINK OD1 ASP A 111 CD CD A 709 1555 1555 2.70 LINK OD2 ASP A 111 CD CD A 709 1555 1555 2.51 LINK OD2 ASP A 112 CD CD A 706 1555 1555 2.23 LINK OD1 ASP A 117 CD CD A 701 1555 1555 2.60 LINK OD2 ASP A 117 CD CD A 717 1555 1555 2.67 LINK OE1 GLU A 118 CD CD A 718 1555 1555 2.56 LINK OD2 ASP A 139 CD CD A 702 1555 1555 2.17 LINK OE2 GLU A 145 CD CD A 701 1555 1555 2.47 LINK OE1 GLU A 170 CD CD A 711 1555 1555 2.27 LINK OE2 GLU A 170 CD CD A 711 1555 1555 2.58 LINK OE1 GLU A 207 CD CD A 719 1555 1555 2.63 LINK OE1 GLU A 241 CD CD A 720 1555 1555 2.49 LINK OD2 ASP A 268 CD CD A 702 1555 6555 2.55 LINK OE1 GLU A 272 CD CD A 704 1555 6555 2.34 LINK OE2 GLU A 272 CD CD A 715 1555 1555 2.40 LINK OE2 GLU A 282 CD CD A 703 1555 1555 2.24 LINK OD1 ASP A 286 CD CD A 703 1555 1555 2.48 LINK OD2 ASP A 286 CD CD A 703 1555 1555 2.44 LINK OE1 GLU A 362 CD CD A 712 1555 1555 2.55 LINK OE2 GLU A 362 CD CD A 712 1555 1555 2.27 LINK OD2 ASP A 388 CD CD A 721 1555 1555 2.07 LINK NE2 HIS A 413 CD CD A 716 1555 1555 2.41 LINK OD2 ASP A 424 CD CD A 712 1555 1555 1.80 LINK OD1 ASN A 450 CD CD A 713 1555 1555 2.52 LINK OD1 ASP A 452 CD CD A 713 1555 1555 2.53 LINK OD2 ASP A 457 CD CD A 722 1555 1555 2.25 LINK OD2 ASP A 474 CD CD A 714 1555 1555 2.18 LINK OE2 GLU A 534 CD CD A 714 1555 1555 2.62 LINK OE1 GLU A 545 CD CD A 701 1555 2545 2.22 LINK OE1 GLU A 549 CD CD A 717 1555 2545 2.28 LINK OE2 GLU A 550 CD CD A 706 1555 2545 2.39 LINK OE1 GLU A 588 CD CD A 703 1555 2545 2.63 LINK OE2 GLU A 588 CD CD A 703 1555 2545 2.19 LINK CD CD A 702 O HOH A 807 1555 1555 2.07 LINK CD CD A 704 O HOH A 813 1555 5554 2.30 LINK CD CD A 711 O HOH A 809 1555 1555 1.77 LINK CD CD A 713 O HOH A 801 1555 1555 1.97 LINK CD CD A 715 O HOH A 821 1555 1555 2.42 LINK CD CD A 716 O HOH A 825 1555 1555 2.38 LINK NE2 HIS D 3 CD CD D 101 1555 1555 2.55 CISPEP 1 ASN A 47 PRO A 48 0 -2.93 CISPEP 2 TYR A 397 PRO A 398 0 5.55 CRYST1 117.651 117.651 147.900 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008500 0.004907 0.000000 0.00000 SCALE2 0.000000 0.009815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006761 0.00000