HEADER    PROTEIN FIBRIL                          23-APR-19   6RHY              
TITLE     STRUCTURE OF PORE-FORMING AMYLOID-BETA TETRAMERS                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: AMYLOID BETA A4 PROTEIN;                                   
COMPND   3 CHAIN: A, B, C, D;                                                   
COMPND   4 SYNONYM: ABPP,APPI,APP,ALZHEIMER DISEASE AMYLOID PROTEIN,AMYLOID     
COMPND   5 PRECURSOR PROTEIN,BETA-AMYLOID PRECURSOR PROTEIN,CEREBRAL VASCULAR   
COMPND   6 AMYLOID PEPTIDE,CVAP,PREA4,PROTEASE NEXIN-II,PN-II;                  
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: APP, A4, AD1;                                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    AMYLOID, ALZHEIMER'S DISEASE, MEMBRANE PORE, OLIGOMER, PROTEIN FIBRIL 
EXPDTA    SOLUTION NMR                                                          
NUMMDL    15                                                                    
AUTHOR    B.BARDIAUX,S.CIUDAD,N.CARULLA                                         
REVDAT   4   19-JUN-24 6RHY    1       REMARK                                   
REVDAT   3   14-JUN-23 6RHY    1       JRNL                                     
REVDAT   2   08-JUL-20 6RHY    1       JRNL                                     
REVDAT   1   25-SEP-19 6RHY    0                                                
JRNL        AUTH   S.CIUDAD,E.PUIG,T.BOTZANOWSKI,M.MEIGOONI,A.S.ARANGO,J.DO,    
JRNL        AUTH 2 M.MAYZEL,M.BAYOUMI,S.CHAIGNEPAIN,G.MAGLIA,S.CIANFERANI,      
JRNL        AUTH 3 V.OREKHOV,E.TAJKHORSHID,B.BARDIAUX,N.CARULLA                 
JRNL        TITL   A BETA (1-42) TETRAMER AND OCTAMER STRUCTURES REVEAL EDGE    
JRNL        TITL 2 CONDUCTIVITY PORES AS A MECHANISM FOR MEMBRANE DAMAGE.       
JRNL        REF    NAT COMMUN                    V.  11  3014 2020              
JRNL        REFN                   ESSN 2041-1723                               
JRNL        PMID   32541820                                                     
JRNL        DOI    10.1038/S41467-020-16566-1                                   
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   S.CIUDAD,E.PUIG,T.BOTZANOWSKI,M.MEIGOONI,A.S.ARANGO,J.DO,    
REMARK   1  AUTH 2 M.MAYZEL,M.BAYOUMI,S.CHAIGNEPAIN,G.MAGLIA,S.CIANFERANI,      
REMARK   1  AUTH 3 V.OREKHOV,E.TAJKHORSHID,B.BARDIAUX,N.CARULLA                 
REMARK   1  TITL   ABETA(1-42) TETRAMER AND OCTAMER STRUCTURES REVEAL EDGE      
REMARK   1  TITL 2 PORES AS A MECHANISM FOR MEMBRANE DAMAGE                     
REMARK   1  REF    BIORXIV                                    2019              
REMARK   1  REFN                   ISSN 2692-8205                               
REMARK   1  DOI    10.1101/759472                                               
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : ARIA, CNS                                            
REMARK   3   AUTHORS     : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER,        
REMARK   3                 ADAMS, CLORE, GROS, NILGES AND READ (CNS)            
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6RHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-19.                  
REMARK 100 THE DEPOSITION ID IS D_1292101515.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 310.15; 310.15                     
REMARK 210  PH                             : 8.5; 9.5                           
REMARK 210  IONIC STRENGTH                 : NULL; NULL                         
REMARK 210  PRESSURE                       : 1 ATM; 1 ATM                       
REMARK 210  SAMPLE CONTENTS                : 1 MM [U-15N] AMYLOID-BETA A4       
REMARK 210                                   PROTEIN, 10 MM [U-2H] TRIS-D11,    
REMARK 210                                   28.5 MM [U-2H] DPC-D38, 90% H2O/   
REMARK 210                                   10% D2O; 1 MM [U-13C; U-15N; U-    
REMARK 210                                   2H] AMYLOID-BETA A4 PROTEIN, 10    
REMARK 210                                   MM [U-2H] TRIS-D11, 28.5 MM [U-    
REMARK 210                                   2H] DPC-D38, 90% H2O/10% D2O; 1    
REMARK 210                                   MM [U-2H,13C,15N]-ILE-[13CH3]D1,   
REMARK 210                                   ALA-[13CH3], LEU/VAL-[13CH3]PROR   
REMARK 210                                   AMYLOID-BETA A4 PROTEIN, 10 MM     
REMARK 210                                   [U-2H] TRIS-D11, 28.5 MM [U-2H]    
REMARK 210                                   DPC-D38, 90% H2O/10% D2O; 1 MM     
REMARK 210                                   [U-2H,15N]-ILE-[13CH3]D1, ALA-     
REMARK 210                                   [13CH3], LEU/VAL-[13CH3]PROR       
REMARK 210                                   AMYLOID-BETA A4 PROTEIN, 10 MM     
REMARK 210                                   [U-2H] TRIS-D11, 28.5 MM [U-2H]    
REMARK 210                                   DPC-D38, 90% H2O/10% D2O           
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N TROSY; 3D HNCA; 3D       
REMARK 210                                   HNCO; 3D HN(CO)CA; 3D HNCACB; 3D   
REMARK 210                                   HN(COCA)CB; 3D 13C-HMQC-[1H,1H]-   
REMARK 210                                   NOESY-13C-HMQC; 3D (HME)CME([C]    
REMARK 210                                   CA)CO; 3D (HME)CME([C]CA)NH; 3D    
REMARK 210                                   HME(CME[C]CA)NH; 3D (H)C-TOCSY-C-  
REMARK 210                                   TOCSY-(C)H; 3D HM-CMHM NOESY; 3D   
REMARK 210                                   CM-CMHM NOESY; 3D HM-NH NOESY;     
REMARK 210                                   3D CM-NH NOESY                     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE III                         
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TALOS, TOPSPIN, CCPNMR ANALYSIS    
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 500                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 15                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15590 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   OE2  GLU C    11     HE2  HIS C    13              1.59            
REMARK 500   OE2  GLU A    11     HE2  HIS A    13              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLU B  22      179.17     63.48                                   
REMARK 500  1 LYS B  28      -52.99     71.51                                   
REMARK 500  1 GLU D  22      179.37     63.26                                   
REMARK 500  1 LYS D  28      -52.34     71.94                                   
REMARK 500  2 GLU A   3       79.31     62.34                                   
REMARK 500  2 ARG A   5       94.41     57.09                                   
REMARK 500  2 SER A   8      114.51   -168.01                                   
REMARK 500  2 ARG B   5      -52.55   -131.71                                   
REMARK 500  2 VAL B  24       28.85   -147.45                                   
REMARK 500  2 ASN B  27       70.74     69.56                                   
REMARK 500  2 GLU C   3       79.30     61.53                                   
REMARK 500  2 ARG C   5       94.63     56.72                                   
REMARK 500  2 SER C   8      114.43   -168.31                                   
REMARK 500  2 ARG D   5      -52.73   -131.67                                   
REMARK 500  2 VAL D  24       28.73   -147.70                                   
REMARK 500  2 ASN D  27       70.56     69.45                                   
REMARK 500  3 HIS A   6       57.94    -96.25                                   
REMARK 500  3 SER A  26      -46.46   -170.85                                   
REMARK 500  3 ASN A  27       63.68   -158.96                                   
REMARK 500  3 LYS B  16      -36.16   -143.86                                   
REMARK 500  3 HIS C   6       57.11    -96.34                                   
REMARK 500  3 SER C  26      -46.72   -170.21                                   
REMARK 500  3 ASN C  27       63.20   -158.70                                   
REMARK 500  3 LYS D  16      -36.22   -143.90                                   
REMARK 500  4 ARG A   5       43.13    -78.58                                   
REMARK 500  4 ARG C   5       43.64    -78.47                                   
REMARK 500  5 LYS B  16       77.03   -112.22                                   
REMARK 500  5 VAL B  24      -75.35   -119.27                                   
REMARK 500  5 LYS D  16       76.86   -112.37                                   
REMARK 500  5 VAL D  24      -75.26   -119.33                                   
REMARK 500  6 GLU A  22      -76.86     68.40                                   
REMARK 500  6 ASP A  23      -76.01   -139.31                                   
REMARK 500  6 VAL A  24       61.15     64.61                                   
REMARK 500  6 ASN A  27       36.60   -151.38                                   
REMARK 500  6 GLU C  22      -77.15     69.06                                   
REMARK 500  6 ASP C  23      -75.70   -138.87                                   
REMARK 500  6 VAL C  24       61.44     64.29                                   
REMARK 500  6 ASN C  27       36.30   -151.01                                   
REMARK 500  7 PHE A   4      113.72   -166.52                                   
REMARK 500  7 ASN A  27       78.96   -151.06                                   
REMARK 500  7 ASP B   7      -65.79    -97.61                                   
REMARK 500  7 GLN B  15      -69.46   -139.01                                   
REMARK 500  7 ASN B  27      101.43   -168.29                                   
REMARK 500  7 PHE C   4      113.79   -166.94                                   
REMARK 500  7 ASN C  27       79.51   -151.17                                   
REMARK 500  7 ASP D   7      -66.04    -97.36                                   
REMARK 500  7 GLN D  15      -69.15   -139.50                                   
REMARK 500  7 ASN D  27      101.43   -167.45                                   
REMARK 500  8 HIS A   6      -58.91   -154.51                                   
REMARK 500  8 GLU B   3       65.83     68.13                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     134 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 34396   RELATED DB: BMRB                                 
REMARK 900 STRUCTURE OF PORE-FORMING AMYLOID-BETA TETRAMERS                     
DBREF  6RHY A    1    42  UNP    P05067   A4_HUMAN       672    713             
DBREF  6RHY B    1    42  UNP    P05067   A4_HUMAN       672    713             
DBREF  6RHY C    1    42  UNP    P05067   A4_HUMAN       672    713             
DBREF  6RHY D    1    42  UNP    P05067   A4_HUMAN       672    713             
SEQRES   1 A   42  ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS          
SEQRES   2 A   42  HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER          
SEQRES   3 A   42  ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL          
SEQRES   4 A   42  VAL ILE ALA                                                  
SEQRES   1 B   42  ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS          
SEQRES   2 B   42  HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER          
SEQRES   3 B   42  ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL          
SEQRES   4 B   42  VAL ILE ALA                                                  
SEQRES   1 C   42  ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS          
SEQRES   2 C   42  HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER          
SEQRES   3 C   42  ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL          
SEQRES   4 C   42  VAL ILE ALA                                                  
SEQRES   1 D   42  ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS          
SEQRES   2 D   42  HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER          
SEQRES   3 D   42  ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL          
SEQRES   4 D   42  VAL ILE ALA                                                  
HELIX    1 AA1 LEU B   17  PHE B   20  1                                   4    
HELIX    2 AA2 LEU D   17  PHE D   20  1                                   4    
SHEET    1 AA1 6 TYR A  10  ALA A  21  0                                        
SHEET    2 AA1 6 GLY A  29  ILE A  41 -1  O  ALA A  30   N  ALA A  21           
SHEET    3 AA1 6 ALA B  30  ILE B  41 -1  O  ALA B  30   N  ILE A  41           
SHEET    4 AA1 6 ALA D  30  ILE D  41 -1  O  MET D  35   N  GLY B  37           
SHEET    5 AA1 6 GLY C  29  ILE C  41 -1  N  ILE C  41   O  ALA D  30           
SHEET    6 AA1 6 TYR C  10  ALA C  21 -1  N  ALA C  21   O  ALA C  30           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1